data_3SYK # _model_server_result.job_id vgClhrhVV41darHPDCRgZg _model_server_result.datetime_utc '2024-12-26 14:26:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3syk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":312}' # _entry.id 3SYK # _exptl.entry_id 3SYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SYK _cell.length_a 76.77 _cell.length_b 93.993 _cell.length_c 106.964 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_466 x-1/2,-y+3/2,-z+1 1 0 0 0 -1 0 0 0 -1 -38.385 140.9895 106.964 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C HIS 69 A HIS 69 1_555 A N MSE 70 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 70 A MSE 70 1_555 A N SER 71 A SER 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C LYS 86 A LYS 86 1_555 A N MSE 87 A MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C MSE 87 A MSE 87 1_555 A N ALA 88 A ALA 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C ALA 129 A ALA 129 1_555 A N MSE 130 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C MSE 130 A MSE 130 1_555 A N GLY 131 A GLY 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C VAL 162 A VAL 162 1_555 A N MSE 163 A MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C MSE 163 A MSE 163 1_555 A N GLU 164 A GLU 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C ARG 180 A ARG 180 1_555 A N MSE 181 A MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C MSE 181 A MSE 181 1_555 A N GLU 182 A GLU 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 A C HIS 215 A HIS 215 1_555 A N MSE 216 A MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C MSE 216 A MSE 216 1_555 A N LEU 217 A LEU 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C GLN 223 A GLN 223 1_555 A N MSE 224 A MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 A C MSE 224 A MSE 224 1_555 A N THR 225 A THR 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 B C HIS 69 B HIS 69 1_555 B N MSE 70 B MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 B C MSE 70 B MSE 70 1_555 B N SER 71 B SER 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 B C LYS 86 B LYS 86 1_555 B N MSE 87 B MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 B C MSE 87 B MSE 87 1_555 B N ALA 88 B ALA 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 B C ALA 129 B ALA 129 1_555 B N MSE 130 B MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale21 B C MSE 130 B MSE 130 1_555 B N GLY 131 B GLY 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale22 B C VAL 162 B VAL 162 1_555 B N MSE 163 B MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale23 B C MSE 163 B MSE 163 1_555 B N GLU 164 B GLU 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 B C ARG 180 B ARG 180 1_555 B N MSE 181 B MSE 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 B C MSE 181 B MSE 181 1_555 B N GLU 182 B GLU 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale26 B C HIS 215 B HIS 215 1_555 B N MSE 216 B MSE 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale27 B C MSE 216 B MSE 216 1_555 B N LEU 217 B LEU 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale28 B C GLN 223 B GLN 223 1_555 B N MSE 224 B MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale29 B C MSE 224 B MSE 224 1_555 B N THR 225 B THR 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 296 n n S O2 SO4 doub 297 n n S O3 SO4 sing 298 n n S O4 SO4 sing 299 n n # _atom_sites.entry_id 3SYK _atom_sites.fract_transf_matrix[1][1] 0.013026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 310 1 SO4 SO4 . D 2 SO4 A 1 311 2 SO4 SO4 . E 2 SO4 A 1 312 3 SO4 SO4 . F 2 SO4 B 1 310 4 SO4 SO4 . G 2 SO4 B 1 311 5 SO4 SO4 . H 2 SO4 B 1 312 6 SO4 SO4 . I 3 HOH A 1 313 2 HOH HOH . I 3 HOH A 2 314 4 HOH HOH . I 3 HOH A 3 315 5 HOH HOH . I 3 HOH A 4 316 6 HOH HOH . I 3 HOH A 5 317 8 HOH HOH . I 3 HOH A 6 318 10 HOH HOH . I 3 HOH A 7 319 11 HOH HOH . I 3 HOH A 8 320 12 HOH HOH . I 3 HOH A 9 321 13 HOH HOH . I 3 HOH A 10 322 17 HOH HOH . I 3 HOH A 11 323 19 HOH HOH . I 3 HOH A 12 324 21 HOH HOH . I 3 HOH A 13 325 22 HOH HOH . I 3 HOH A 14 326 24 HOH HOH . J 3 HOH B 1 313 1 HOH HOH . J 3 HOH B 2 314 3 HOH HOH . J 3 HOH B 3 315 7 HOH HOH . J 3 HOH B 4 316 9 HOH HOH . J 3 HOH B 5 317 14 HOH HOH . J 3 HOH B 6 318 16 HOH HOH . J 3 HOH B 7 319 18 HOH HOH . J 3 HOH B 8 320 20 HOH HOH . J 3 HOH B 9 321 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 2 40.422 70.249 80.946 1 72.99 ? S SO4 312 A 1 HETATM 2 O O1 SO4 . . . E 2 41.646 69.895 81.657 1 72.82 ? O1 SO4 312 A 1 HETATM 3 O O2 SO4 . . . E 2 40.722 70.646 79.571 1 73.12 ? O2 SO4 312 A 1 HETATM 4 O O3 SO4 . . . E 2 39.524 69.097 80.923 1 72.84 ? O3 SO4 312 A 1 HETATM 5 O O4 SO4 . . . E 2 39.8 71.364 81.652 1 73.08 ? O4 SO4 312 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #