data_3SYR # _model_server_result.job_id r1QwYRTIyj6WoTTZirVmPA _model_server_result.datetime_utc '2024-10-13 23:22:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3syr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":843}' # _entry.id 3SYR # _exptl.entry_id 3SYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.218 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-fluoro-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SYR _cell.length_a 128.556 _cell.length_b 128.556 _cell.length_c 116.282 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.282 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id LLP _struct_conn.ptnr1_label_seq_id 680 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LLP _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 681 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 681 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.334 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H13 F N2 O7' _chem_comp.formula_weight 292.218 _chem_comp.id GPK _chem_comp.mon_nstd_flag . _chem_comp.name 5-fluoro-1-(beta-D-glucopyranosyl)pyrimidine-2,4(1H,3H)-dione _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SYR _atom_sites.fract_transf_matrix[1][1] 0.007779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GPK A 1 843 1 GPK D25 . C 3 HOH A 1 844 1 HOH HOH . C 3 HOH A 2 845 2 HOH HOH . C 3 HOH A 3 846 3 HOH HOH . C 3 HOH A 4 847 4 HOH HOH . C 3 HOH A 5 848 5 HOH HOH . C 3 HOH A 6 849 6 HOH HOH . C 3 HOH A 7 850 7 HOH HOH . C 3 HOH A 8 851 8 HOH HOH . C 3 HOH A 9 852 9 HOH HOH . C 3 HOH A 10 853 10 HOH HOH . C 3 HOH A 11 854 11 HOH HOH . C 3 HOH A 12 855 12 HOH HOH . C 3 HOH A 13 856 13 HOH HOH . C 3 HOH A 14 857 14 HOH HOH . C 3 HOH A 15 858 15 HOH HOH . C 3 HOH A 16 859 16 HOH HOH . C 3 HOH A 17 860 17 HOH HOH . C 3 HOH A 18 861 18 HOH HOH . C 3 HOH A 19 862 19 HOH HOH . C 3 HOH A 20 863 20 HOH HOH . C 3 HOH A 21 864 21 HOH HOH . C 3 HOH A 22 865 22 HOH HOH . C 3 HOH A 23 866 23 HOH HOH . C 3 HOH A 24 867 24 HOH HOH . C 3 HOH A 25 868 25 HOH HOH . C 3 HOH A 26 869 26 HOH HOH . C 3 HOH A 27 870 27 HOH HOH . C 3 HOH A 28 871 28 HOH HOH . C 3 HOH A 29 872 29 HOH HOH . C 3 HOH A 30 873 30 HOH HOH . C 3 HOH A 31 874 31 HOH HOH . C 3 HOH A 32 875 32 HOH HOH . C 3 HOH A 33 876 33 HOH HOH . C 3 HOH A 34 877 34 HOH HOH . C 3 HOH A 35 878 35 HOH HOH . C 3 HOH A 36 879 36 HOH HOH . C 3 HOH A 37 880 37 HOH HOH . C 3 HOH A 38 881 38 HOH HOH . C 3 HOH A 39 882 39 HOH HOH . C 3 HOH A 40 883 40 HOH HOH . C 3 HOH A 41 884 41 HOH HOH . C 3 HOH A 42 885 42 HOH HOH . C 3 HOH A 43 886 43 HOH HOH . C 3 HOH A 44 887 44 HOH HOH . C 3 HOH A 45 888 45 HOH HOH . C 3 HOH A 46 889 46 HOH HOH . C 3 HOH A 47 890 47 HOH HOH . C 3 HOH A 48 891 48 HOH HOH . C 3 HOH A 49 892 49 HOH HOH . C 3 HOH A 50 893 50 HOH HOH . C 3 HOH A 51 894 51 HOH HOH . C 3 HOH A 52 895 52 HOH HOH . C 3 HOH A 53 896 53 HOH HOH . C 3 HOH A 54 897 54 HOH HOH . C 3 HOH A 55 898 55 HOH HOH . C 3 HOH A 56 899 56 HOH HOH . C 3 HOH A 57 900 57 HOH HOH . C 3 HOH A 58 901 58 HOH HOH . C 3 HOH A 59 902 59 HOH HOH . C 3 HOH A 60 903 60 HOH HOH . C 3 HOH A 61 904 61 HOH HOH . C 3 HOH A 62 905 62 HOH HOH . C 3 HOH A 63 906 63 HOH HOH . C 3 HOH A 64 907 64 HOH HOH . C 3 HOH A 65 908 65 HOH HOH . C 3 HOH A 66 909 66 HOH HOH . C 3 HOH A 67 910 67 HOH HOH . C 3 HOH A 68 911 68 HOH HOH . C 3 HOH A 69 912 69 HOH HOH . C 3 HOH A 70 913 70 HOH HOH . C 3 HOH A 71 914 71 HOH HOH . C 3 HOH A 72 915 72 HOH HOH . C 3 HOH A 73 916 73 HOH HOH . C 3 HOH A 74 917 74 HOH HOH . C 3 HOH A 75 918 75 HOH HOH . C 3 HOH A 76 919 76 HOH HOH . C 3 HOH A 77 920 77 HOH HOH . C 3 HOH A 78 921 78 HOH HOH . C 3 HOH A 79 922 79 HOH HOH . C 3 HOH A 80 923 80 HOH HOH . C 3 HOH A 81 924 81 HOH HOH . C 3 HOH A 82 925 82 HOH HOH . C 3 HOH A 83 926 83 HOH HOH . C 3 HOH A 84 927 84 HOH HOH . C 3 HOH A 85 928 85 HOH HOH . C 3 HOH A 86 929 86 HOH HOH . C 3 HOH A 87 930 87 HOH HOH . C 3 HOH A 88 931 88 HOH HOH . C 3 HOH A 89 932 89 HOH HOH . C 3 HOH A 90 933 90 HOH HOH . C 3 HOH A 91 934 91 HOH HOH . C 3 HOH A 92 935 92 HOH HOH . C 3 HOH A 93 936 93 HOH HOH . C 3 HOH A 94 937 94 HOH HOH . C 3 HOH A 95 938 95 HOH HOH . C 3 HOH A 96 939 96 HOH HOH . C 3 HOH A 97 940 97 HOH HOH . C 3 HOH A 98 941 98 HOH HOH . C 3 HOH A 99 942 99 HOH HOH . C 3 HOH A 100 943 100 HOH HOH . C 3 HOH A 101 944 101 HOH HOH . C 3 HOH A 102 945 102 HOH HOH . C 3 HOH A 103 946 103 HOH HOH . C 3 HOH A 104 947 104 HOH HOH . C 3 HOH A 105 948 105 HOH HOH . C 3 HOH A 106 949 106 HOH HOH . C 3 HOH A 107 950 107 HOH HOH . C 3 HOH A 108 951 108 HOH HOH . C 3 HOH A 109 952 109 HOH HOH . C 3 HOH A 110 953 110 HOH HOH . C 3 HOH A 111 954 111 HOH HOH . C 3 HOH A 112 955 112 HOH HOH . C 3 HOH A 113 956 113 HOH HOH . C 3 HOH A 114 957 114 HOH HOH . C 3 HOH A 115 958 115 HOH HOH . C 3 HOH A 116 959 116 HOH HOH . C 3 HOH A 117 960 117 HOH HOH . C 3 HOH A 118 961 118 HOH HOH . C 3 HOH A 119 962 119 HOH HOH . C 3 HOH A 120 963 120 HOH HOH . C 3 HOH A 121 964 121 HOH HOH . C 3 HOH A 122 965 122 HOH HOH . C 3 HOH A 123 966 123 HOH HOH . C 3 HOH A 124 967 124 HOH HOH . C 3 HOH A 125 968 125 HOH HOH . C 3 HOH A 126 969 126 HOH HOH . C 3 HOH A 127 970 127 HOH HOH . C 3 HOH A 128 971 128 HOH HOH . C 3 HOH A 129 972 129 HOH HOH . C 3 HOH A 130 973 130 HOH HOH . C 3 HOH A 131 974 131 HOH HOH . C 3 HOH A 132 975 132 HOH HOH . C 3 HOH A 133 976 133 HOH HOH . C 3 HOH A 134 977 134 HOH HOH . C 3 HOH A 135 978 135 HOH HOH . C 3 HOH A 136 979 136 HOH HOH . C 3 HOH A 137 980 137 HOH HOH . C 3 HOH A 138 981 138 HOH HOH . C 3 HOH A 139 982 139 HOH HOH . C 3 HOH A 140 983 140 HOH HOH . C 3 HOH A 141 984 141 HOH HOH . C 3 HOH A 142 985 142 HOH HOH . C 3 HOH A 143 986 143 HOH HOH . C 3 HOH A 144 987 144 HOH HOH . C 3 HOH A 145 988 145 HOH HOH . C 3 HOH A 146 989 146 HOH HOH . C 3 HOH A 147 990 147 HOH HOH . C 3 HOH A 148 991 148 HOH HOH . C 3 HOH A 149 992 149 HOH HOH . C 3 HOH A 150 993 150 HOH HOH . C 3 HOH A 151 994 151 HOH HOH . C 3 HOH A 152 995 152 HOH HOH . C 3 HOH A 153 996 153 HOH HOH . C 3 HOH A 154 997 154 HOH HOH . C 3 HOH A 155 998 155 HOH HOH . C 3 HOH A 156 999 156 HOH HOH . C 3 HOH A 157 1000 157 HOH HOH . C 3 HOH A 158 1001 158 HOH HOH . C 3 HOH A 159 1002 159 HOH HOH . C 3 HOH A 160 1003 160 HOH HOH . C 3 HOH A 161 1004 161 HOH HOH . C 3 HOH A 162 1005 162 HOH HOH . C 3 HOH A 163 1006 163 HOH HOH . C 3 HOH A 164 1007 164 HOH HOH . C 3 HOH A 165 1008 165 HOH HOH . C 3 HOH A 166 1009 166 HOH HOH . C 3 HOH A 167 1010 167 HOH HOH . C 3 HOH A 168 1011 168 HOH HOH . C 3 HOH A 169 1012 169 HOH HOH . C 3 HOH A 170 1013 170 HOH HOH . C 3 HOH A 171 1014 171 HOH HOH . C 3 HOH A 172 1015 172 HOH HOH . C 3 HOH A 173 1016 173 HOH HOH . C 3 HOH A 174 1017 174 HOH HOH . C 3 HOH A 175 1018 175 HOH HOH . C 3 HOH A 176 1019 176 HOH HOH . C 3 HOH A 177 1020 177 HOH HOH . C 3 HOH A 178 1021 178 HOH HOH . C 3 HOH A 179 1022 179 HOH HOH . C 3 HOH A 180 1023 180 HOH HOH . C 3 HOH A 181 1024 181 HOH HOH . C 3 HOH A 182 1025 182 HOH HOH . C 3 HOH A 183 1026 183 HOH HOH . C 3 HOH A 184 1027 184 HOH HOH . C 3 HOH A 185 1028 185 HOH HOH . C 3 HOH A 186 1029 186 HOH HOH . C 3 HOH A 187 1030 187 HOH HOH . C 3 HOH A 188 1031 188 HOH HOH . C 3 HOH A 189 1032 189 HOH HOH . C 3 HOH A 190 1033 190 HOH HOH . C 3 HOH A 191 1034 191 HOH HOH . C 3 HOH A 192 1035 192 HOH HOH . C 3 HOH A 193 1036 193 HOH HOH . C 3 HOH A 194 1037 194 HOH HOH . C 3 HOH A 195 1038 195 HOH HOH . C 3 HOH A 196 1039 196 HOH HOH . C 3 HOH A 197 1040 197 HOH HOH . C 3 HOH A 198 1041 198 HOH HOH . C 3 HOH A 199 1042 199 HOH HOH . C 3 HOH A 200 1043 200 HOH HOH . C 3 HOH A 201 1044 201 HOH HOH . C 3 HOH A 202 1045 202 HOH HOH . C 3 HOH A 203 1046 203 HOH HOH . C 3 HOH A 204 1047 204 HOH HOH . C 3 HOH A 205 1048 205 HOH HOH . C 3 HOH A 206 1049 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A GPK . . . B 2 35.503 23.491 28.595 1 13.68 ? C1A GPK 843 A 1 HETATM 2 F F1 GPK . . . B 2 37.61 24.155 29.411 1 14.79 ? F1 GPK 843 A 1 HETATM 3 C C2A GPK . . . B 2 36.275 24.181 29.518 1 14.78 ? C2A GPK 843 A 1 HETATM 4 C C3A GPK . . . B 2 35.649 24.904 30.535 1 14.84 ? C3A GPK 843 A 1 HETATM 5 O O3A GPK . . . B 2 36.347 25.543 31.344 1 15.67 ? O3A GPK 843 A 1 HETATM 6 N N4 GPK . . . B 2 34.298 24.935 30.635 1 13.61 ? N4 GPK 843 A 1 HETATM 7 C C5A GPK . . . B 2 33.512 24.265 29.758 1 12.69 ? C5A GPK 843 A 1 HETATM 8 O O5A GPK . . . B 2 32.262 24.254 29.874 1 13.22 ? O5A GPK 843 A 1 HETATM 9 C C1 GPK . . . B 2 33.227 22.796 27.745 1 12.92 ? C1 GPK 843 A 1 HETATM 10 N N1' GPK . . . B 2 34.099 23.454 28.771 1 12.93 ? N1' GPK 843 A 1 HETATM 11 C C2 GPK . . . B 2 33.657 23.04 26.293 1 13.26 ? C2 GPK 843 A 1 HETATM 12 O O2 GPK . . . B 2 33.76 24.449 26.045 1 12.43 ? O2 GPK 843 A 1 HETATM 13 C C3 GPK . . . B 2 32.613 22.381 25.376 1 11.59 ? C3 GPK 843 A 1 HETATM 14 O O3 GPK . . . B 2 33.022 22.45 24.024 1 8.98 ? O3 GPK 843 A 1 HETATM 15 C C4 GPK . . . B 2 32.364 20.929 25.76 1 11.23 ? C4 GPK 843 A 1 HETATM 16 O O4 GPK . . . B 2 31.255 20.457 24.976 1 14.66 ? O4 GPK 843 A 1 HETATM 17 C C5 GPK . . . B 2 32.113 20.76 27.272 1 11.27 ? C5 GPK 843 A 1 HETATM 18 O O5 GPK . . . B 2 33.168 21.378 27.998 1 12.32 ? O5 GPK 843 A 1 HETATM 19 C C6 GPK . . . B 2 32.085 19.307 27.768 1 10.44 ? C6 GPK 843 A 1 HETATM 20 O O6 GPK . . . B 2 33.175 18.551 27.212 1 7.53 ? O6 GPK 843 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #