data_3SYU
#
_model_server_result.job_id            ZTq9PKYPKQTrMKM8obpxHQ 
_model_server_result.datetime_utc      '2024-10-15 02:14:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3syu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":106}' 
#
_entry.id    3SYU 
#
_exptl.entry_id    3SYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3SYU 
_cell.length_a            88.69 
_cell.length_b            88.69 
_cell.length_c            88.69 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A C TYR 57 A TYR 57 1_555 A N CGA 58 A CGA 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale2 A C CGA 58 A CGA 58 1_555 A N TRP 59 A TRP 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
metalc ? metalc1 A O GLY 30 A GLY 30 1_555 B NA NA . A NA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc2 B NA NA . A NA 106 1_555 F O HOH . A HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc3 B NA NA . A NA 106 1_555 F O HOH . A HOH 992 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc4 C NA NA . A NA 107 1_555 F O HOH . A HOH 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3SYU 
_atom_sites.fract_transf_matrix[1][1]    0.011275 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011275 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011275 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 106 106 NA NA . 
C 2 NA A 1 107 107 NA NA . 
D 3 2GP A 1 105 105 2GP 2GP . 
E 4 UNX A 1 991 991 UNX UNX . 
F 5 HOH A 1 201 201 HOH HOH . 
F 5 HOH A 2 202 202 HOH HOH . 
F 5 HOH A 3 203 203 HOH HOH . 
F 5 HOH A 4 204 204 HOH HOH . 
F 5 HOH A 5 205 205 HOH HOH . 
F 5 HOH A 6 206 206 HOH HOH . 
F 5 HOH A 7 207 207 HOH HOH . 
F 5 HOH A 8 208 208 HOH HOH . 
F 5 HOH A 9 209 209 HOH HOH . 
F 5 HOH A 10 210 210 HOH HOH . 
F 5 HOH A 11 212 212 HOH HOH . 
F 5 HOH A 12 213 213 HOH HOH . 
F 5 HOH A 13 215 215 HOH HOH . 
F 5 HOH A 14 216 216 HOH HOH . 
F 5 HOH A 15 217 217 HOH HOH . 
F 5 HOH A 16 218 218 HOH HOH . 
F 5 HOH A 17 219 219 HOH HOH . 
F 5 HOH A 18 220 220 HOH HOH . 
F 5 HOH A 19 222 222 HOH HOH . 
F 5 HOH A 20 223 223 HOH HOH . 
F 5 HOH A 21 224 224 HOH HOH . 
F 5 HOH A 22 226 226 HOH HOH . 
F 5 HOH A 23 231 231 HOH HOH . 
F 5 HOH A 24 232 232 HOH HOH . 
F 5 HOH A 25 233 233 HOH HOH . 
F 5 HOH A 26 234 234 HOH HOH . 
F 5 HOH A 27 236 236 HOH HOH . 
F 5 HOH A 28 239 239 HOH HOH . 
F 5 HOH A 29 242 242 HOH HOH . 
F 5 HOH A 30 243 243 HOH HOH . 
F 5 HOH A 31 251 251 HOH HOH . 
F 5 HOH A 32 252 252 HOH HOH . 
F 5 HOH A 33 256 256 HOH HOH . 
F 5 HOH A 34 258 258 HOH HOH . 
F 5 HOH A 35 259 259 HOH HOH . 
F 5 HOH A 36 260 260 HOH HOH . 
F 5 HOH A 37 261 261 HOH HOH . 
F 5 HOH A 38 263 263 HOH HOH . 
F 5 HOH A 39 267 267 HOH HOH . 
F 5 HOH A 40 268 268 HOH HOH . 
F 5 HOH A 41 269 269 HOH HOH . 
F 5 HOH A 42 271 271 HOH HOH . 
F 5 HOH A 43 992 992 HOH HOH . 
F 5 HOH A 44 993 993 HOH HOH . 
F 5 HOH A 45 994 994 HOH HOH . 
F 5 HOH A 46 996 996 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               6.98 
_atom_site.Cartn_y               -49.951 
_atom_site.Cartn_z               11.384 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.2 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           106 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              150 
_model_server_stats.parse_time_ms           200 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           828 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           1 
#