data_3SZ1
#
_model_server_result.job_id            GgusyrDiVOnuOhA7UnvGQg 
_model_server_result.datetime_utc      '2024-11-25 05:47:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3sz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
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_entry.id    3SZ1 
#
_exptl.entry_id    3SZ1 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              158.238 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.67 
_cell.angle_gamma         90 
_cell.entry_id            3SZ1 
_cell.length_a            92.26 
_cell.length_b            62.15 
_cell.length_c            119.13 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3SZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C9 H18 O2' 
_chem_comp.formula_weight    158.238 
_chem_comp.id                KNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'nonanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C1 KNA doub 173 n n 
C1 C2 KNA sing 174 n n 
C1 O1 KNA sing 175 n n 
O1 HO1 KNA sing 176 n n 
C3 C2 KNA sing 177 n n 
C2 H2 KNA sing 178 n n 
C2 H2A KNA sing 179 n n 
C3 C4 KNA sing 180 n n 
C3 H3 KNA sing 181 n n 
C3 H3A KNA sing 182 n n 
C5 C4 KNA sing 183 n n 
C4 H4 KNA sing 184 n n 
C4 H4A KNA sing 185 n n 
C5 C6 KNA sing 186 n n 
C5 H5 KNA sing 187 n n 
C5 H5A KNA sing 188 n n 
C6 C7 KNA sing 189 n n 
C6 H6 KNA sing 190 n n 
C6 H6A KNA sing 191 n n 
C7 C8 KNA sing 192 n n 
C7 H7 KNA sing 193 n n 
C7 H7A KNA sing 194 n n 
C8 C9 KNA sing 195 n n 
C8 H8 KNA sing 196 n n 
C8 H8A KNA sing 197 n n 
C9 H9 KNA sing 198 n n 
C9 H9A KNA sing 199 n n 
C9 H9B KNA sing 200 n n 
#
_atom_sites.entry_id                     3SZ1 
_atom_sites.fract_transf_matrix[1][1]    0.010839 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002239 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01609 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008571 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 KNA A 1 1 1 KNA KNA . 
D 2 KNA A 1 2 2 KNA KNA . 
E 3 LU2 B 1 1 1 LU2 LUT . 
F 4 MYR B 1 478 1 MYR MYR . 
G 5 HOH A 1 4 4 HOH HOH . 
G 5 HOH A 2 5 5 HOH HOH . 
G 5 HOH A 3 8 8 HOH HOH . 
G 5 HOH A 4 11 11 HOH HOH . 
G 5 HOH A 5 17 17 HOH HOH . 
G 5 HOH A 6 19 19 HOH HOH . 
G 5 HOH A 7 21 21 HOH HOH . 
G 5 HOH A 8 22 22 HOH HOH . 
G 5 HOH A 9 23 23 HOH HOH . 
G 5 HOH A 10 24 24 HOH HOH . 
G 5 HOH A 11 25 25 HOH HOH . 
G 5 HOH A 12 28 28 HOH HOH . 
G 5 HOH A 13 31 31 HOH HOH . 
G 5 HOH A 14 32 32 HOH HOH . 
G 5 HOH A 15 37 37 HOH HOH . 
G 5 HOH A 16 42 42 HOH HOH . 
G 5 HOH A 17 43 43 HOH HOH . 
G 5 HOH A 18 44 44 HOH HOH . 
G 5 HOH A 19 48 48 HOH HOH . 
G 5 HOH A 20 52 52 HOH HOH . 
G 5 HOH A 21 53 53 HOH HOH . 
G 5 HOH A 22 54 54 HOH HOH . 
G 5 HOH A 23 55 55 HOH HOH . 
G 5 HOH A 24 61 61 HOH HOH . 
G 5 HOH A 25 62 62 HOH HOH . 
G 5 HOH A 26 66 66 HOH HOH . 
G 5 HOH A 27 67 67 HOH HOH . 
G 5 HOH A 28 68 68 HOH HOH . 
G 5 HOH A 29 72 72 HOH HOH . 
G 5 HOH A 30 75 75 HOH HOH . 
G 5 HOH A 31 77 77 HOH HOH . 
G 5 HOH A 32 80 80 HOH HOH . 
G 5 HOH A 33 82 82 HOH HOH . 
G 5 HOH A 34 89 89 HOH HOH . 
G 5 HOH A 35 91 91 HOH HOH . 
G 5 HOH A 36 97 97 HOH HOH . 
G 5 HOH A 37 100 100 HOH HOH . 
G 5 HOH A 38 101 101 HOH HOH . 
G 5 HOH A 39 102 102 HOH HOH . 
G 5 HOH A 40 105 105 HOH HOH . 
G 5 HOH A 41 106 106 HOH HOH . 
G 5 HOH A 42 108 108 HOH HOH . 
G 5 HOH A 43 109 109 HOH HOH . 
G 5 HOH A 44 110 110 HOH HOH . 
G 5 HOH A 45 112 112 HOH HOH . 
G 5 HOH A 46 478 2 HOH HOH . 
H 5 HOH B 1 3 3 HOH HOH . 
H 5 HOH B 2 6 6 HOH HOH . 
H 5 HOH B 3 7 7 HOH HOH . 
H 5 HOH B 4 9 9 HOH HOH . 
H 5 HOH B 5 10 10 HOH HOH . 
H 5 HOH B 6 12 12 HOH HOH . 
H 5 HOH B 7 13 13 HOH HOH . 
H 5 HOH B 8 14 14 HOH HOH . 
H 5 HOH B 9 15 15 HOH HOH . 
H 5 HOH B 10 16 16 HOH HOH . 
H 5 HOH B 11 18 18 HOH HOH . 
H 5 HOH B 12 26 26 HOH HOH . 
H 5 HOH B 13 27 27 HOH HOH . 
H 5 HOH B 14 29 29 HOH HOH . 
H 5 HOH B 15 33 33 HOH HOH . 
H 5 HOH B 16 34 34 HOH HOH . 
H 5 HOH B 17 35 35 HOH HOH . 
H 5 HOH B 18 36 36 HOH HOH . 
H 5 HOH B 19 38 38 HOH HOH . 
H 5 HOH B 20 39 39 HOH HOH . 
H 5 HOH B 21 40 40 HOH HOH . 
H 5 HOH B 22 41 41 HOH HOH . 
H 5 HOH B 23 45 45 HOH HOH . 
H 5 HOH B 24 46 46 HOH HOH . 
H 5 HOH B 25 47 47 HOH HOH . 
H 5 HOH B 26 49 49 HOH HOH . 
H 5 HOH B 27 50 50 HOH HOH . 
H 5 HOH B 28 51 51 HOH HOH . 
H 5 HOH B 29 56 56 HOH HOH . 
H 5 HOH B 30 57 57 HOH HOH . 
H 5 HOH B 31 58 58 HOH HOH . 
H 5 HOH B 32 59 59 HOH HOH . 
H 5 HOH B 33 65 65 HOH HOH . 
H 5 HOH B 34 69 69 HOH HOH . 
H 5 HOH B 35 70 70 HOH HOH . 
H 5 HOH B 36 71 71 HOH HOH . 
H 5 HOH B 37 73 73 HOH HOH . 
H 5 HOH B 38 74 74 HOH HOH . 
H 5 HOH B 39 81 81 HOH HOH . 
H 5 HOH B 40 84 84 HOH HOH . 
H 5 HOH B 41 87 87 HOH HOH . 
H 5 HOH B 42 88 88 HOH HOH . 
H 5 HOH B 43 92 92 HOH HOH . 
H 5 HOH B 44 93 93 HOH HOH . 
H 5 HOH B 45 94 94 HOH HOH . 
H 5 HOH B 46 95 95 HOH HOH . 
H 5 HOH B 47 96 96 HOH HOH . 
H 5 HOH B 48 98 98 HOH HOH . 
H 5 HOH B 49 103 103 HOH HOH . 
H 5 HOH B 50 104 104 HOH HOH . 
H 5 HOH B 51 111 111 HOH HOH . 
H 5 HOH B 52 479 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KNA . . . D 2 17.452 5.837 13.996 1 73.84 ? C1 KNA 2 A 1 
HETATM 2 O O1 KNA . . . D 2 18.44 5.649 14.713 1 68.9 ? O1 KNA 2 A 1 
HETATM 3 C C2 KNA . . . D 2 16.063 5.655 14.58 1 65.37 ? C2 KNA 2 A 1 
HETATM 4 O O2 KNA . . . D 2 17.589 6.216 12.691 1 76.39 ? O2 KNA 2 A 1 
HETATM 5 C C3 KNA . . . D 2 15.028 5.076 13.595 1 65.68 ? C3 KNA 2 A 1 
HETATM 6 C C4 KNA . . . D 2 13.71 4.846 14.357 1 60.39 ? C4 KNA 2 A 1 
HETATM 7 C C5 KNA . . . D 2 12.844 3.759 13.701 1 57.04 ? C5 KNA 2 A 1 
HETATM 8 C C6 KNA . . . D 2 12.41 2.717 14.746 1 40.21 ? C6 KNA 2 A 1 
HETATM 9 C C7 KNA . . . D 2 10.878 2.631 14.751 1 57.66 ? C7 KNA 2 A 1 
HETATM 10 C C8 KNA . . . D 2 10.289 2.322 16.15 1 45.95 ? C8 KNA 2 A 1 
HETATM 11 C C9 KNA . . . D 2 8.856 2.847 16.22 1 48.94 ? C9 KNA 2 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#