data_3SZC # _model_server_result.job_id Ai_qbFaV4AIY6fTMMYrV_g _model_server_result.datetime_utc '2024-11-23 05:47:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3szc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3SZC # _exptl.entry_id 3SZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SZC _cell.length_a 149.54 _cell.length_b 149.54 _cell.length_c 81.74 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 163 A CYS 160 1_555 F AU AU . A AU 505 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc2 A SG CYS 131 A CYS 128 1_555 D AU AU . A AU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 A SG CYS 163 A CYS 160 1_555 F AU AU . A AU 505 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 A SG CYS 163 A CYS 160 1_555 E AU AU . A AU 504 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.444 ? metalc ? metalc5 E AU AU . A AU 504 1_555 J S H2S . A H2S 509 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc6 F AU AU . A AU 505 1_555 I S H2S . A H2S 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? covale ? covale1 A SG CYS 359 A CYS 356 1_555 I S H2S . A H2S 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3SZC _atom_sites.fract_transf_matrix[1][1] 0.006687 _atom_sites.fract_transf_matrix[1][2] 0.003861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 DCQ A 1 502 502 DCQ DCQ . D 4 AU A 1 503 503 AU AU . E 4 AU A 1 504 504 AU AU . F 4 AU A 1 505 505 AU AU . G 5 H2S A 1 506 506 H2S H2S . H 6 SO4 A 1 507 507 SO4 SO4 . I 5 H2S A 1 508 508 H2S H2S . J 5 H2S A 1 509 509 H2S H2S . K 7 HOH A 1 510 510 HOH HOH . K 7 HOH A 2 511 511 HOH HOH . K 7 HOH A 3 512 512 HOH HOH . K 7 HOH A 4 513 513 HOH HOH . K 7 HOH A 5 514 514 HOH HOH . K 7 HOH A 6 515 515 HOH HOH . K 7 HOH A 7 516 516 HOH HOH . K 7 HOH A 8 517 517 HOH HOH . K 7 HOH A 9 518 518 HOH HOH . K 7 HOH A 10 519 519 HOH HOH . K 7 HOH A 11 520 520 HOH HOH . K 7 HOH A 12 521 521 HOH HOH . K 7 HOH A 13 522 522 HOH HOH . K 7 HOH A 14 523 523 HOH HOH . K 7 HOH A 15 524 524 HOH HOH . K 7 HOH A 16 525 525 HOH HOH . K 7 HOH A 17 526 526 HOH HOH . K 7 HOH A 18 527 527 HOH HOH . K 7 HOH A 19 528 528 HOH HOH . K 7 HOH A 20 529 529 HOH HOH . K 7 HOH A 21 530 530 HOH HOH . K 7 HOH A 22 531 531 HOH HOH . K 7 HOH A 23 532 532 HOH HOH . K 7 HOH A 24 533 533 HOH HOH . K 7 HOH A 25 534 534 HOH HOH . K 7 HOH A 26 535 535 HOH HOH . K 7 HOH A 27 536 536 HOH HOH . K 7 HOH A 28 537 537 HOH HOH . K 7 HOH A 29 538 538 HOH HOH . K 7 HOH A 30 539 539 HOH HOH . K 7 HOH A 31 540 540 HOH HOH . K 7 HOH A 32 541 541 HOH HOH . K 7 HOH A 33 542 542 HOH HOH . K 7 HOH A 34 543 543 HOH HOH . K 7 HOH A 35 544 544 HOH HOH . K 7 HOH A 36 545 545 HOH HOH . K 7 HOH A 37 546 546 HOH HOH . K 7 HOH A 38 547 547 HOH HOH . K 7 HOH A 39 548 548 HOH HOH . K 7 HOH A 40 549 549 HOH HOH . K 7 HOH A 41 550 550 HOH HOH . K 7 HOH A 42 551 551 HOH HOH . K 7 HOH A 43 552 552 HOH HOH . K 7 HOH A 44 553 553 HOH HOH . K 7 HOH A 45 554 554 HOH HOH . K 7 HOH A 46 555 555 HOH HOH . K 7 HOH A 47 556 556 HOH HOH . K 7 HOH A 48 557 557 HOH HOH . K 7 HOH A 49 558 558 HOH HOH . K 7 HOH A 50 559 559 HOH HOH . K 7 HOH A 51 560 560 HOH HOH . K 7 HOH A 52 561 561 HOH HOH . K 7 HOH A 53 562 562 HOH HOH . K 7 HOH A 54 563 563 HOH HOH . K 7 HOH A 55 564 564 HOH HOH . K 7 HOH A 56 565 565 HOH HOH . K 7 HOH A 57 566 566 HOH HOH . K 7 HOH A 58 567 567 HOH HOH . K 7 HOH A 59 568 568 HOH HOH . K 7 HOH A 60 569 569 HOH HOH . K 7 HOH A 61 570 570 HOH HOH . K 7 HOH A 62 571 571 HOH HOH . K 7 HOH A 63 572 572 HOH HOH . K 7 HOH A 64 573 573 HOH HOH . K 7 HOH A 65 574 574 HOH HOH . K 7 HOH A 66 575 575 HOH HOH . K 7 HOH A 67 576 576 HOH HOH . K 7 HOH A 68 577 577 HOH HOH . K 7 HOH A 69 578 578 HOH HOH . K 7 HOH A 70 579 579 HOH HOH . K 7 HOH A 71 580 580 HOH HOH . K 7 HOH A 72 583 583 HOH HOH . K 7 HOH A 73 585 585 HOH HOH . K 7 HOH A 74 586 586 HOH HOH . K 7 HOH A 75 587 587 HOH HOH . K 7 HOH A 76 588 588 HOH HOH . K 7 HOH A 77 589 589 HOH HOH . K 7 HOH A 78 591 591 HOH HOH . K 7 HOH A 79 592 592 HOH HOH . K 7 HOH A 80 593 593 HOH HOH . K 7 HOH A 81 594 594 HOH HOH . K 7 HOH A 82 595 595 HOH HOH . K 7 HOH A 83 596 596 HOH HOH . K 7 HOH A 84 597 597 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 40.66 -23.556 8.217 1 36.8 ? PA FAD 500 A 1 HETATM 2 O O1A FAD . . . B 2 41.862 -24.456 8.365 1 36.66 ? O1A FAD 500 A 1 HETATM 3 O O2A FAD . . . B 2 40.742 -22.266 9.003 1 38.38 ? O2A FAD 500 A 1 HETATM 4 O O5B FAD . . . B 2 39.357 -24.364 8.712 1 39.28 ? O5B FAD 500 A 1 HETATM 5 C C5B FAD . . . B 2 39.077 -25.674 8.268 1 39.56 ? C5B FAD 500 A 1 HETATM 6 C C4B FAD . . . B 2 38.271 -26.358 9.373 1 42.67 ? C4B FAD 500 A 1 HETATM 7 O O4B FAD . . . B 2 37.796 -27.618 8.956 1 43.2 ? O4B FAD 500 A 1 HETATM 8 C C3B FAD . . . B 2 39.112 -26.615 10.604 1 41.54 ? C3B FAD 500 A 1 HETATM 9 O O3B FAD . . . B 2 38.352 -26.154 11.688 1 44.2 ? O3B FAD 500 A 1 HETATM 10 C C2B FAD . . . B 2 39.257 -28.123 10.682 1 42.97 ? C2B FAD 500 A 1 HETATM 11 O O2B FAD . . . B 2 39.24 -28.538 12.022 1 49.89 ? O2B FAD 500 A 1 HETATM 12 C C1B FAD . . . B 2 38.008 -28.587 9.964 1 41.07 ? C1B FAD 500 A 1 HETATM 13 N N9A FAD . . . B 2 38.093 -29.92 9.33 1 41.47 ? N9A FAD 500 A 1 HETATM 14 C C8A FAD . . . B 2 39.088 -30.405 8.527 1 47.48 ? C8A FAD 500 A 1 HETATM 15 N N7A FAD . . . B 2 38.767 -31.663 8.137 1 48.89 ? N7A FAD 500 A 1 HETATM 16 C C5A FAD . . . B 2 37.572 -31.985 8.674 1 46.11 ? C5A FAD 500 A 1 HETATM 17 C C6A FAD . . . B 2 36.784 -33.133 8.599 1 44 ? C6A FAD 500 A 1 HETATM 18 N N6A FAD . . . B 2 37.184 -34.219 7.923 1 34.96 ? N6A FAD 500 A 1 HETATM 19 N N1A FAD . . . B 2 35.583 -33.153 9.275 1 45.94 ? N1A FAD 500 A 1 HETATM 20 C C2A FAD . . . B 2 35.18 -32.06 10.014 1 46.96 ? C2A FAD 500 A 1 HETATM 21 N N3A FAD . . . B 2 35.961 -30.933 10.091 1 46.9 ? N3A FAD 500 A 1 HETATM 22 C C4A FAD . . . B 2 37.14 -30.897 9.424 1 44.07 ? C4A FAD 500 A 1 HETATM 23 N N1 FAD . . . B 2 45.263 -15.549 5.7 1 32.97 ? N1 FAD 500 A 1 HETATM 24 C C2 FAD . . . B 2 45.17 -14.163 5.7 1 40.44 ? C2 FAD 500 A 1 HETATM 25 O O2 FAD . . . B 2 44.259 -13.569 5.104 1 42.42 ? O2 FAD 500 A 1 HETATM 26 N N3 FAD . . . B 2 46.03 -13.428 6.48 1 40.86 ? N3 FAD 500 A 1 HETATM 27 C C4 FAD . . . B 2 47.039 -14.04 7.185 1 44.59 ? C4 FAD 500 A 1 HETATM 28 O O4 FAD . . . B 2 47.922 -13.345 7.695 1 52.37 ? O4 FAD 500 A 1 HETATM 29 C C4X FAD . . . B 2 47.136 -15.429 7.171 1 38.74 ? C4X FAD 500 A 1 HETATM 30 N N5 FAD . . . B 2 48.17 -16.041 7.854 1 36.27 ? N5 FAD 500 A 1 HETATM 31 C C5X FAD . . . B 2 48.165 -17.414 7.972 1 40.57 ? C5X FAD 500 A 1 HETATM 32 C C6 FAD . . . B 2 49.067 -18.005 8.852 1 37.03 ? C6 FAD 500 A 1 HETATM 33 C C7 FAD . . . B 2 49.047 -19.378 9.018 1 38.9 ? C7 FAD 500 A 1 HETATM 34 C C7M FAD . . . B 2 50.085 -20.015 9.897 1 41.76 ? C7M FAD 500 A 1 HETATM 35 C C8 FAD . . . B 2 48.245 -20.167 8.18 1 43.64 ? C8 FAD 500 A 1 HETATM 36 C C8M FAD . . . B 2 48.337 -21.672 8.274 1 45.3 ? C8M FAD 500 A 1 HETATM 37 C C9 FAD . . . B 2 47.442 -19.57 7.194 1 38.16 ? C9 FAD 500 A 1 HETATM 38 C C9A FAD . . . B 2 47.267 -18.19 7.215 1 38.04 ? C9A FAD 500 A 1 HETATM 39 N N10 FAD . . . B 2 46.349 -17.558 6.382 1 34.89 ? N10 FAD 500 A 1 HETATM 40 C C10 FAD . . . B 2 46.164 -16.193 6.521 1 33.49 ? C10 FAD 500 A 1 HETATM 41 C C1' FAD . . . B 2 45.689 -18.27 5.229 1 38.17 ? C1' FAD 500 A 1 HETATM 42 C C2' FAD . . . B 2 44.202 -18.593 5.491 1 34.21 ? C2' FAD 500 A 1 HETATM 43 O O2' FAD . . . B 2 43.487 -17.421 5.837 1 36.72 ? O2' FAD 500 A 1 HETATM 44 C C3' FAD . . . B 2 44.036 -19.582 6.631 1 36.16 ? C3' FAD 500 A 1 HETATM 45 O O3' FAD . . . B 2 44.738 -20.772 6.324 1 38.94 ? O3' FAD 500 A 1 HETATM 46 C C4' FAD . . . B 2 42.548 -19.853 6.939 1 40.23 ? C4' FAD 500 A 1 HETATM 47 O O4' FAD . . . B 2 42.38 -20.364 8.254 1 37.76 ? O4' FAD 500 A 1 HETATM 48 C C5' FAD . . . B 2 41.883 -20.799 5.94 1 38.94 ? C5' FAD 500 A 1 HETATM 49 O O5' FAD . . . B 2 40.521 -20.874 6.284 1 43.98 ? O5' FAD 500 A 1 HETATM 50 P P FAD . . . B 2 39.639 -22.156 5.902 1 33.81 ? P FAD 500 A 1 HETATM 51 O O1P FAD . . . B 2 38.237 -21.862 6.375 1 36.88 ? O1P FAD 500 A 1 HETATM 52 O O2P FAD . . . B 2 39.74 -22.44 4.426 1 34.52 ? O2P FAD 500 A 1 HETATM 53 O O3P FAD . . . B 2 40.404 -23.361 6.647 1 29.37 ? O3P FAD 500 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #