data_3SZC # _model_server_result.job_id ZlTa-CSHdHMsauJetEaiQg _model_server_result.datetime_utc '2024-11-23 06:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3szc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 3SZC # _exptl.entry_id 3SZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SZC _cell.length_a 149.54 _cell.length_b 149.54 _cell.length_c 81.74 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 163 A CYS 160 1_555 F AU AU . A AU 505 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc2 A SG CYS 131 A CYS 128 1_555 D AU AU . A AU 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 A SG CYS 163 A CYS 160 1_555 F AU AU . A AU 505 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 A SG CYS 163 A CYS 160 1_555 E AU AU . A AU 504 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.444 ? metalc ? metalc5 E AU AU . A AU 504 1_555 J S H2S . A H2S 509 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc6 F AU AU . A AU 505 1_555 I S H2S . A H2S 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? covale ? covale1 A SG CYS 359 A CYS 356 1_555 I S H2S . A H2S 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? # _chem_comp.formula 'C19 H30 O4' _chem_comp.formula_weight 322.439 _chem_comp.id DCQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms decylubiquinone # _atom_sites.entry_id 3SZC _atom_sites.fract_transf_matrix[1][1] 0.006687 _atom_sites.fract_transf_matrix[1][2] 0.003861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 DCQ A 1 502 502 DCQ DCQ . D 4 AU A 1 503 503 AU AU . E 4 AU A 1 504 504 AU AU . F 4 AU A 1 505 505 AU AU . G 5 H2S A 1 506 506 H2S H2S . H 6 SO4 A 1 507 507 SO4 SO4 . I 5 H2S A 1 508 508 H2S H2S . J 5 H2S A 1 509 509 H2S H2S . K 7 HOH A 1 510 510 HOH HOH . K 7 HOH A 2 511 511 HOH HOH . K 7 HOH A 3 512 512 HOH HOH . K 7 HOH A 4 513 513 HOH HOH . K 7 HOH A 5 514 514 HOH HOH . K 7 HOH A 6 515 515 HOH HOH . K 7 HOH A 7 516 516 HOH HOH . K 7 HOH A 8 517 517 HOH HOH . K 7 HOH A 9 518 518 HOH HOH . K 7 HOH A 10 519 519 HOH HOH . K 7 HOH A 11 520 520 HOH HOH . K 7 HOH A 12 521 521 HOH HOH . K 7 HOH A 13 522 522 HOH HOH . K 7 HOH A 14 523 523 HOH HOH . K 7 HOH A 15 524 524 HOH HOH . K 7 HOH A 16 525 525 HOH HOH . K 7 HOH A 17 526 526 HOH HOH . K 7 HOH A 18 527 527 HOH HOH . K 7 HOH A 19 528 528 HOH HOH . K 7 HOH A 20 529 529 HOH HOH . K 7 HOH A 21 530 530 HOH HOH . K 7 HOH A 22 531 531 HOH HOH . K 7 HOH A 23 532 532 HOH HOH . K 7 HOH A 24 533 533 HOH HOH . K 7 HOH A 25 534 534 HOH HOH . K 7 HOH A 26 535 535 HOH HOH . K 7 HOH A 27 536 536 HOH HOH . K 7 HOH A 28 537 537 HOH HOH . K 7 HOH A 29 538 538 HOH HOH . K 7 HOH A 30 539 539 HOH HOH . K 7 HOH A 31 540 540 HOH HOH . K 7 HOH A 32 541 541 HOH HOH . K 7 HOH A 33 542 542 HOH HOH . K 7 HOH A 34 543 543 HOH HOH . K 7 HOH A 35 544 544 HOH HOH . K 7 HOH A 36 545 545 HOH HOH . K 7 HOH A 37 546 546 HOH HOH . K 7 HOH A 38 547 547 HOH HOH . K 7 HOH A 39 548 548 HOH HOH . K 7 HOH A 40 549 549 HOH HOH . K 7 HOH A 41 550 550 HOH HOH . K 7 HOH A 42 551 551 HOH HOH . K 7 HOH A 43 552 552 HOH HOH . K 7 HOH A 44 553 553 HOH HOH . K 7 HOH A 45 554 554 HOH HOH . K 7 HOH A 46 555 555 HOH HOH . K 7 HOH A 47 556 556 HOH HOH . K 7 HOH A 48 557 557 HOH HOH . K 7 HOH A 49 558 558 HOH HOH . K 7 HOH A 50 559 559 HOH HOH . K 7 HOH A 51 560 560 HOH HOH . K 7 HOH A 52 561 561 HOH HOH . K 7 HOH A 53 562 562 HOH HOH . K 7 HOH A 54 563 563 HOH HOH . K 7 HOH A 55 564 564 HOH HOH . K 7 HOH A 56 565 565 HOH HOH . K 7 HOH A 57 566 566 HOH HOH . K 7 HOH A 58 567 567 HOH HOH . K 7 HOH A 59 568 568 HOH HOH . K 7 HOH A 60 569 569 HOH HOH . K 7 HOH A 61 570 570 HOH HOH . K 7 HOH A 62 571 571 HOH HOH . K 7 HOH A 63 572 572 HOH HOH . K 7 HOH A 64 573 573 HOH HOH . K 7 HOH A 65 574 574 HOH HOH . K 7 HOH A 66 575 575 HOH HOH . K 7 HOH A 67 576 576 HOH HOH . K 7 HOH A 68 577 577 HOH HOH . K 7 HOH A 69 578 578 HOH HOH . K 7 HOH A 70 579 579 HOH HOH . K 7 HOH A 71 580 580 HOH HOH . K 7 HOH A 72 583 583 HOH HOH . K 7 HOH A 73 585 585 HOH HOH . K 7 HOH A 74 586 586 HOH HOH . K 7 HOH A 75 587 587 HOH HOH . K 7 HOH A 76 588 588 HOH HOH . K 7 HOH A 77 589 589 HOH HOH . K 7 HOH A 78 591 591 HOH HOH . K 7 HOH A 79 592 592 HOH HOH . K 7 HOH A 80 593 593 HOH HOH . K 7 HOH A 81 594 594 HOH HOH . K 7 HOH A 82 595 595 HOH HOH . K 7 HOH A 83 596 596 HOH HOH . K 7 HOH A 84 597 597 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 DCQ . . . C 3 40.157 -12.993 7.356 1 99.57 ? O2 DCQ 502 A 1 HETATM 2 C C2 DCQ . . . C 3 41.344 -12.273 7.402 1 103.8 ? C2 DCQ 502 A 1 HETATM 3 C C3 DCQ . . . C 3 42.368 -12.665 8.271 1 104.84 ? C3 DCQ 502 A 1 HETATM 4 O O3 DCQ . . . C 3 42.176 -13.783 9.075 1 102.16 ? O3 DCQ 502 A 1 HETATM 5 C C3M DCQ . . . C 3 42.285 -15.064 8.562 1 99.84 ? C3M DCQ 502 A 1 HETATM 6 C C4 DCQ . . . C 3 43.56 -11.916 8.323 1 105.76 ? C4 DCQ 502 A 1 HETATM 7 O O4 DCQ . . . C 3 44.595 -12.242 9.179 1 106.7 ? O4 DCQ 502 A 1 HETATM 8 C C4M DCQ . . . C 3 45.021 -11.334 10.132 1 104.79 ? C4M DCQ 502 A 1 HETATM 9 C C5 DCQ . . . C 3 43.726 -10.8 7.504 1 104.21 ? C5 DCQ 502 A 1 HETATM 10 O O5 DCQ . . . C 3 44.897 -10.073 7.545 1 105.15 ? O5 DCQ 502 A 1 HETATM 11 C C1 DCQ . . . C 3 41.528 -11.147 6.588 1 103.29 ? C1 DCQ 502 A 1 HETATM 12 C C1M DCQ . . . C 3 40.461 -10.702 5.654 1 104.56 ? C1M DCQ 502 A 1 HETATM 13 C C6 DCQ . . . C 3 42.712 -10.418 6.64 1 100.51 ? C6 DCQ 502 A 1 HETATM 14 C C7 DCQ . . . C 3 42.892 -9.195 5.795 1 94.6 ? C7 DCQ 502 A 1 HETATM 15 C C8 DCQ . . . C 3 43.067 -7.899 6.532 1 89.22 ? C8 DCQ 502 A 1 HETATM 16 C C9 DCQ . . . C 3 41.837 -7.098 6.82 1 86.05 ? C9 DCQ 502 A 1 HETATM 17 C C10 DCQ . . . C 3 41.835 -5.653 6.437 1 87.71 ? C10 DCQ 502 A 1 HETATM 18 C C11 DCQ . . . C 3 42.155 -5.301 5.015 1 88.74 ? C11 DCQ 502 A 1 HETATM 19 C C12 DCQ . . . C 3 42.043 -6.381 3.982 1 90.64 ? C12 DCQ 502 A 1 HETATM 20 C C13 DCQ . . . C 3 41.224 -6.101 2.759 1 95.87 ? C13 DCQ 502 A 1 HETATM 21 C C14 DCQ . . . C 3 41.817 -5.272 1.658 1 97.81 ? C14 DCQ 502 A 1 HETATM 22 C C15 DCQ . . . C 3 41.361 -5.553 0.258 1 97.79 ? C15 DCQ 502 A 1 HETATM 23 C C16 DCQ . . . C 3 41.914 -4.716 -0.85 1 97.65 ? C16 DCQ 502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #