data_3SZQ # _model_server_result.job_id JMvcKPEddxnFqH7arrfgBw _model_server_result.datetime_utc '2024-10-19 13:33:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3szq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2}' # _entry.id 3SZQ # _exptl.entry_id 3SZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3SZQ _cell.length_a 157.05 _cell.length_b 157.05 _cell.length_c 157.05 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 157.05 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G ZN ZN . A ZN 4 1_555 A SG CYS 174 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 G ZN ZN . A ZN 4 1_555 A SG CYS 177 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc3 G ZN ZN . A ZN 4 1_555 A NE2 HIS 191 A HIS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 G ZN ZN . A ZN 4 1_555 A OE2 GLU 195 A GLU 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 1 1_555 C N1 DG 14 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 1 1_555 C O6 DG 14 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 1 1_555 C N2 DG 14 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 2 B DC 2 1_555 C N1 DG 13 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 2 B DC 2 1_555 C O6 DG 13 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 2 B DC 2 1_555 C N2 DG 13 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 3 B DC 3 1_555 C N1 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 3 B DC 3 1_555 C O6 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 3 B DC 3 1_555 C N2 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 4 B DT 4 1_555 C N1 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 4 B DT 4 1_555 C N6 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DG 5 B DG 5 1_555 C N3 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N2 DG 5 B DG 5 1_555 C O2 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O6 DG 5 B DG 5 1_555 C N4 DC 10 C DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 109 n n C1 O1 BME sing 110 n n C1 H11 BME sing 111 n n C1 H12 BME sing 112 n n C2 S2 BME sing 113 n n C2 H21 BME sing 114 n n C2 H22 BME sing 115 n n O1 HO1 BME sing 116 n n S2 HS2 BME sing 117 n n # _atom_sites.entry_id 3SZQ _atom_sites.fract_transf_matrix[1][1] 0.006367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 AMP A 1 1 1 AMP AMP . E 5 BME A 1 2 2 BME BME . F 5 BME A 1 3 3 BME BME . G 6 ZN A 1 4 4 ZN ZN . H 7 HOH A 1 5 5 HOH HOH . H 7 HOH A 2 6 6 HOH HOH . H 7 HOH A 3 7 7 HOH HOH . H 7 HOH A 4 8 8 HOH HOH . H 7 HOH A 5 9 9 HOH HOH . H 7 HOH A 6 10 10 HOH HOH . H 7 HOH A 7 11 11 HOH HOH . H 7 HOH A 8 12 12 HOH HOH . H 7 HOH A 9 13 13 HOH HOH . H 7 HOH A 10 15 15 HOH HOH . H 7 HOH A 11 16 16 HOH HOH . H 7 HOH A 12 17 17 HOH HOH . H 7 HOH A 13 18 18 HOH HOH . H 7 HOH A 14 19 19 HOH HOH . H 7 HOH A 15 21 21 HOH HOH . H 7 HOH A 16 22 22 HOH HOH . H 7 HOH A 17 23 23 HOH HOH . H 7 HOH A 18 24 24 HOH HOH . H 7 HOH A 19 25 25 HOH HOH . H 7 HOH A 20 26 26 HOH HOH . H 7 HOH A 21 233 233 HOH HOH . H 7 HOH A 22 234 234 HOH HOH . H 7 HOH A 23 235 235 HOH HOH . H 7 HOH A 24 236 236 HOH HOH . H 7 HOH A 25 237 237 HOH HOH . H 7 HOH A 26 238 238 HOH HOH . H 7 HOH A 27 239 239 HOH HOH . H 7 HOH A 28 240 240 HOH HOH . H 7 HOH A 29 241 241 HOH HOH . H 7 HOH A 30 242 242 HOH HOH . H 7 HOH A 31 243 243 HOH HOH . H 7 HOH A 32 244 244 HOH HOH . H 7 HOH A 33 245 245 HOH HOH . H 7 HOH A 34 246 246 HOH HOH . H 7 HOH A 35 247 247 HOH HOH . H 7 HOH A 36 248 248 HOH HOH . H 7 HOH A 37 249 249 HOH HOH . H 7 HOH A 38 250 250 HOH HOH . H 7 HOH A 39 251 251 HOH HOH . H 7 HOH A 40 252 252 HOH HOH . H 7 HOH A 41 253 253 HOH HOH . H 7 HOH A 42 254 254 HOH HOH . H 7 HOH A 43 255 255 HOH HOH . H 7 HOH A 44 256 256 HOH HOH . H 7 HOH A 45 257 257 HOH HOH . H 7 HOH A 46 258 258 HOH HOH . H 7 HOH A 47 259 259 HOH HOH . H 7 HOH A 48 260 260 HOH HOH . H 7 HOH A 49 261 261 HOH HOH . H 7 HOH A 50 262 262 HOH HOH . H 7 HOH A 51 263 263 HOH HOH . H 7 HOH A 52 264 264 HOH HOH . H 7 HOH A 53 265 265 HOH HOH . H 7 HOH A 54 266 266 HOH HOH . H 7 HOH A 55 267 267 HOH HOH . H 7 HOH A 56 268 268 HOH HOH . H 7 HOH A 57 269 269 HOH HOH . H 7 HOH A 58 270 270 HOH HOH . H 7 HOH A 59 271 271 HOH HOH . H 7 HOH A 60 272 272 HOH HOH . H 7 HOH A 61 273 273 HOH HOH . H 7 HOH A 62 274 274 HOH HOH . H 7 HOH A 63 275 275 HOH HOH . H 7 HOH A 64 276 276 HOH HOH . H 7 HOH A 65 277 277 HOH HOH . H 7 HOH A 66 278 278 HOH HOH . H 7 HOH A 67 279 279 HOH HOH . H 7 HOH A 68 280 280 HOH HOH . H 7 HOH A 69 281 281 HOH HOH . H 7 HOH A 70 282 282 HOH HOH . H 7 HOH A 71 283 283 HOH HOH . H 7 HOH A 72 284 284 HOH HOH . H 7 HOH A 73 285 285 HOH HOH . H 7 HOH A 74 286 286 HOH HOH . H 7 HOH A 75 287 287 HOH HOH . H 7 HOH A 76 288 288 HOH HOH . H 7 HOH A 77 289 289 HOH HOH . H 7 HOH A 78 290 290 HOH HOH . H 7 HOH A 79 291 291 HOH HOH . H 7 HOH A 80 292 292 HOH HOH . H 7 HOH A 81 293 293 HOH HOH . H 7 HOH A 82 294 294 HOH HOH . H 7 HOH A 83 295 295 HOH HOH . H 7 HOH A 84 296 296 HOH HOH . H 7 HOH A 85 297 297 HOH HOH . H 7 HOH A 86 298 298 HOH HOH . H 7 HOH A 87 299 299 HOH HOH . H 7 HOH A 88 300 300 HOH HOH . H 7 HOH A 89 301 301 HOH HOH . H 7 HOH A 90 302 302 HOH HOH . H 7 HOH A 91 303 303 HOH HOH . H 7 HOH A 92 304 304 HOH HOH . H 7 HOH A 93 305 305 HOH HOH . H 7 HOH A 94 306 306 HOH HOH . H 7 HOH A 95 307 307 HOH HOH . H 7 HOH A 96 308 308 HOH HOH . H 7 HOH A 97 309 309 HOH HOH . H 7 HOH A 98 310 310 HOH HOH . H 7 HOH A 99 311 311 HOH HOH . H 7 HOH A 100 312 312 HOH HOH . H 7 HOH A 101 313 313 HOH HOH . H 7 HOH A 102 314 314 HOH HOH . H 7 HOH A 103 315 315 HOH HOH . H 7 HOH A 104 316 316 HOH HOH . H 7 HOH A 105 317 317 HOH HOH . H 7 HOH A 106 318 318 HOH HOH . H 7 HOH A 107 319 319 HOH HOH . H 7 HOH A 108 320 320 HOH HOH . H 7 HOH A 109 321 321 HOH HOH . H 7 HOH A 110 322 322 HOH HOH . H 7 HOH A 111 323 323 HOH HOH . H 7 HOH A 112 324 324 HOH HOH . H 7 HOH A 113 325 325 HOH HOH . H 7 HOH A 114 326 326 HOH HOH . H 7 HOH A 115 327 327 HOH HOH . H 7 HOH A 116 328 328 HOH HOH . H 7 HOH A 117 329 329 HOH HOH . H 7 HOH A 118 330 330 HOH HOH . H 7 HOH A 119 331 331 HOH HOH . H 7 HOH A 120 332 332 HOH HOH . H 7 HOH A 121 333 333 HOH HOH . H 7 HOH A 122 334 334 HOH HOH . H 7 HOH A 123 335 335 HOH HOH . H 7 HOH A 124 336 336 HOH HOH . H 7 HOH A 125 337 337 HOH HOH . H 7 HOH A 126 338 338 HOH HOH . H 7 HOH A 127 339 339 HOH HOH . H 7 HOH A 128 340 340 HOH HOH . H 7 HOH A 129 341 341 HOH HOH . H 7 HOH A 130 342 342 HOH HOH . H 7 HOH A 131 343 343 HOH HOH . H 7 HOH A 132 344 344 HOH HOH . H 7 HOH A 133 345 345 HOH HOH . H 7 HOH A 134 346 346 HOH HOH . H 7 HOH A 135 347 347 HOH HOH . H 7 HOH A 136 348 348 HOH HOH . H 7 HOH A 137 349 349 HOH HOH . H 7 HOH A 138 350 350 HOH HOH . H 7 HOH A 139 351 351 HOH HOH . H 7 HOH A 140 352 352 HOH HOH . H 7 HOH A 141 353 353 HOH HOH . H 7 HOH A 142 354 354 HOH HOH . H 7 HOH A 143 355 355 HOH HOH . H 7 HOH A 144 356 356 HOH HOH . H 7 HOH A 145 357 357 HOH HOH . H 7 HOH A 146 358 358 HOH HOH . H 7 HOH A 147 359 359 HOH HOH . H 7 HOH A 148 360 360 HOH HOH . H 7 HOH A 149 361 361 HOH HOH . H 7 HOH A 150 362 362 HOH HOH . H 7 HOH A 151 363 363 HOH HOH . H 7 HOH A 152 364 364 HOH HOH . H 7 HOH A 153 365 365 HOH HOH . H 7 HOH A 154 366 366 HOH HOH . H 7 HOH A 155 367 367 HOH HOH . H 7 HOH A 156 368 368 HOH HOH . H 7 HOH A 157 369 369 HOH HOH . H 7 HOH A 158 370 370 HOH HOH . H 7 HOH A 159 371 371 HOH HOH . H 7 HOH A 160 372 372 HOH HOH . H 7 HOH A 161 373 373 HOH HOH . H 7 HOH A 162 374 374 HOH HOH . H 7 HOH A 163 375 375 HOH HOH . H 7 HOH A 164 376 376 HOH HOH . H 7 HOH A 165 377 377 HOH HOH . H 7 HOH A 166 378 378 HOH HOH . H 7 HOH A 167 379 379 HOH HOH . H 7 HOH A 168 380 380 HOH HOH . H 7 HOH A 169 381 381 HOH HOH . H 7 HOH A 170 382 382 HOH HOH . H 7 HOH A 171 383 383 HOH HOH . H 7 HOH A 172 384 384 HOH HOH . H 7 HOH A 173 385 385 HOH HOH . H 7 HOH A 174 386 386 HOH HOH . H 7 HOH A 175 387 387 HOH HOH . H 7 HOH A 176 388 388 HOH HOH . H 7 HOH A 177 389 389 HOH HOH . H 7 HOH A 178 390 390 HOH HOH . H 7 HOH A 179 391 391 HOH HOH . H 7 HOH A 180 392 392 HOH HOH . H 7 HOH A 181 393 393 HOH HOH . H 7 HOH A 182 394 394 HOH HOH . H 7 HOH A 183 395 395 HOH HOH . H 7 HOH A 184 396 396 HOH HOH . H 7 HOH A 185 397 397 HOH HOH . H 7 HOH A 186 398 398 HOH HOH . H 7 HOH A 187 399 399 HOH HOH . H 7 HOH A 188 400 400 HOH HOH . H 7 HOH A 189 401 401 HOH HOH . H 7 HOH A 190 402 402 HOH HOH . H 7 HOH A 191 403 403 HOH HOH . H 7 HOH A 192 404 404 HOH HOH . H 7 HOH A 193 405 405 HOH HOH . H 7 HOH A 194 406 406 HOH HOH . H 7 HOH A 195 407 407 HOH HOH . H 7 HOH A 196 408 408 HOH HOH . H 7 HOH A 197 409 409 HOH HOH . H 7 HOH A 198 410 410 HOH HOH . H 7 HOH A 199 411 411 HOH HOH . H 7 HOH A 200 412 412 HOH HOH . H 7 HOH A 201 413 413 HOH HOH . I 7 HOH B 1 20 20 HOH HOH . I 7 HOH B 2 56 56 HOH HOH . I 7 HOH B 3 57 57 HOH HOH . I 7 HOH B 4 60 60 HOH HOH . I 7 HOH B 5 152 152 HOH HOH . I 7 HOH B 6 187 187 HOH HOH . J 7 HOH C 1 166 166 HOH HOH . J 7 HOH C 2 169 169 HOH HOH . J 7 HOH C 3 192 192 HOH HOH . J 7 HOH C 4 223 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . E 5 19.129 115.036 -4.685 1 34.68 ? C1 BME 2 A 1 HETATM 2 C C2 BME . . . E 5 18.677 113.621 -4.34 1 26.22 ? C2 BME 2 A 1 HETATM 3 O O1 BME . . . E 5 20.538 115.104 -4.624 1 41.79 ? O1 BME 2 A 1 HETATM 4 S S2 BME . . . E 5 19.941 112.416 -4.806 1 45.71 ? S2 BME 2 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #