data_3SZT # _model_server_result.job_id 4t000R5zFgP2vboAfB8vaQ _model_server_result.datetime_utc '2024-11-15 04:33:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3szt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":238}' # _entry.id 3SZT # _exptl.entry_id 3SZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.39 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3SZT _cell.length_a 94.862 _cell.length_b 94.862 _cell.length_c 104.953 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3SZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C16 H27 N O4' _chem_comp.formula_weight 297.39 _chem_comp.id OHN _chem_comp.mon_nstd_flag . _chem_comp.name 'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 OHN sing 237 n n C20 C19 OHN sing 238 n n C19 C18 OHN sing 239 n n C18 C17 OHN sing 240 n n C17 C16 OHN sing 241 n n C16 C15 OHN sing 242 n n C15 C14 OHN sing 243 n n C14 C13 OHN sing 244 n n C13 C11 OHN sing 245 n n C11 O12 OHN doub 246 n n C11 C10 OHN sing 247 n n C10 C8 OHN sing 248 n n C8 O9 OHN doub 249 n n C8 N7 OHN sing 250 n n N7 C1 OHN sing 251 n n C1 C5 OHN sing 252 n n C5 C4 OHN sing 253 n n C1 C2 OHN sing 254 n n C2 O6 OHN doub 255 n n C4 OAP OHN sing 256 n n C2 OAP OHN sing 257 n n C21 H211 OHN sing 258 n n C21 H212 OHN sing 259 n n C21 H213 OHN sing 260 n n C20 H201 OHN sing 261 n n C20 H202 OHN sing 262 n n C19 H191 OHN sing 263 n n C19 H192 OHN sing 264 n n C18 H181 OHN sing 265 n n C18 H182 OHN sing 266 n n C17 H171 OHN sing 267 n n C17 H172 OHN sing 268 n n C16 H161 OHN sing 269 n n C16 H162 OHN sing 270 n n C15 H151 OHN sing 271 n n C15 H152 OHN sing 272 n n C14 H141 OHN sing 273 n n C14 H142 OHN sing 274 n n C13 H131 OHN sing 275 n n C13 H132 OHN sing 276 n n C10 H101 OHN sing 277 n n C10 H102 OHN sing 278 n n N7 H7 OHN sing 279 n n C1 H1 OHN sing 280 n n C5 H5C1 OHN sing 281 n n C5 H5C2 OHN sing 282 n n C4 H4C1 OHN sing 283 n n C4 H4C2 OHN sing 284 n n # _atom_sites.entry_id 3SZT _atom_sites.fract_transf_matrix[1][1] 0.010542 _atom_sites.fract_transf_matrix[1][2] 0.006086 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OHN A 1 238 1 OHN OHN . D 3 NA B 1 238 1 NA NA . E 2 OHN B 1 239 1 OHN OHN . F 4 HOH A 1 239 1 HOH HOH . F 4 HOH A 2 240 2 HOH HOH . F 4 HOH A 3 241 4 HOH HOH . F 4 HOH A 4 242 5 HOH HOH . F 4 HOH A 5 243 6 HOH HOH . F 4 HOH A 6 244 7 HOH HOH . F 4 HOH A 7 245 8 HOH HOH . F 4 HOH A 8 246 10 HOH HOH . F 4 HOH A 9 247 11 HOH HOH . F 4 HOH A 10 248 12 HOH HOH . F 4 HOH A 11 249 15 HOH HOH . F 4 HOH A 12 250 16 HOH HOH . F 4 HOH A 13 251 18 HOH HOH . F 4 HOH A 14 252 19 HOH HOH . F 4 HOH A 15 253 20 HOH HOH . F 4 HOH A 16 254 21 HOH HOH . G 4 HOH B 1 240 3 HOH HOH . G 4 HOH B 2 241 9 HOH HOH . G 4 HOH B 3 242 13 HOH HOH . G 4 HOH B 4 243 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 OHN . . . C 2 40.094 11.026 4.475 1 47.58 ? C21 OHN 238 A 1 HETATM 2 C C20 OHN . . . C 2 39.843 10.431 3.117 1 46.39 ? C20 OHN 238 A 1 HETATM 3 C C19 OHN . . . C 2 40.228 11.473 2.092 1 46.46 ? C19 OHN 238 A 1 HETATM 4 C C18 OHN . . . C 2 40.006 10.919 0.698 1 46.46 ? C18 OHN 238 A 1 HETATM 5 C C17 OHN . . . C 2 40.872 11.661 -0.296 1 45.55 ? C17 OHN 238 A 1 HETATM 6 C C16 OHN . . . C 2 40.059 12.756 -0.969 1 43.6 ? C16 OHN 238 A 1 HETATM 7 C C15 OHN . . . C 2 41.021 13.69 -1.711 1 43.25 ? C15 OHN 238 A 1 HETATM 8 C C14 OHN . . . C 2 40.271 14.905 -2.234 1 42.56 ? C14 OHN 238 A 1 HETATM 9 C C13 OHN . . . C 2 40.707 16.039 -1.338 1 44.55 ? C13 OHN 238 A 1 HETATM 10 C C11 OHN . . . C 2 39.878 17.267 -1.536 1 44.05 ? C11 OHN 238 A 1 HETATM 11 O O12 OHN . . . C 2 39.881 17.847 -2.608 1 46.81 ? O12 OHN 238 A 1 HETATM 12 C C10 OHN . . . C 2 39.104 17.784 -0.369 1 42.4 ? C10 OHN 238 A 1 HETATM 13 C C8 OHN . . . C 2 38.763 19.238 -0.567 1 40.42 ? C8 OHN 238 A 1 HETATM 14 O O9 OHN . . . C 2 37.779 19.503 -1.216 1 41.27 ? O9 OHN 238 A 1 HETATM 15 N N7 OHN . . . C 2 39.541 20.166 -0.025 1 37.02 ? N7 OHN 238 A 1 HETATM 16 C C1 OHN . . . C 2 39.177 21.529 -0.284 1 36.49 ? C1 OHN 238 A 1 HETATM 17 C C5 OHN . . . C 2 39.204 22.444 0.938 1 35.67 ? C5 OHN 238 A 1 HETATM 18 C C4 OHN . . . C 2 39.788 23.795 0.491 1 33.89 ? C4 OHN 238 A 1 HETATM 19 C C2 OHN . . . C 2 40.141 22.217 -1.172 1 35.64 ? C2 OHN 238 A 1 HETATM 20 O O6 OHN . . . C 2 40.582 21.747 -2.186 1 37.38 ? O6 OHN 238 A 1 HETATM 21 O OAP OHN . . . C 2 40.486 23.52 -0.71 1 33.98 ? OAP OHN 238 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 21 #