data_3T04 # _model_server_result.job_id VRRxOUBg1id0wpAO6_hvKA _model_server_result.datetime_utc '2024-12-23 17:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":252}' # _entry.id 3T04 # _exptl.entry_id 3T04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T04 _cell.length_a 39.336 _cell.length_b 49.396 _cell.length_c 107.354 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,C,D,E,H 2 1 B,F,G,I 2 2 A,C,D,E,H 3 1 B,F,G,I 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 39.336 24.698 53.677 3 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 -24.698 53.677 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3T04 _atom_sites.fract_transf_matrix[1][1] 0.025422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 1 1 GOL GOL . D 3 GOL A 1 252 252 GOL GOL . E 3 GOL A 1 253 253 GOL GOL . F 3 GOL D 1 104 104 GOL GOL . G 4 SO4 D 1 105 105 SO4 SO4 . H 5 HOH A 1 3 3 HOH HOH . H 5 HOH A 2 4 4 HOH HOH . H 5 HOH A 3 5 5 HOH HOH . H 5 HOH A 4 8 8 HOH HOH . H 5 HOH A 5 9 9 HOH HOH . H 5 HOH A 6 11 11 HOH HOH . H 5 HOH A 7 12 12 HOH HOH . H 5 HOH A 8 14 14 HOH HOH . H 5 HOH A 9 17 17 HOH HOH . H 5 HOH A 10 19 19 HOH HOH . H 5 HOH A 11 20 20 HOH HOH . H 5 HOH A 12 23 23 HOH HOH . H 5 HOH A 13 24 24 HOH HOH . H 5 HOH A 14 25 25 HOH HOH . H 5 HOH A 15 26 26 HOH HOH . H 5 HOH A 16 27 27 HOH HOH . H 5 HOH A 17 28 28 HOH HOH . H 5 HOH A 18 31 31 HOH HOH . H 5 HOH A 19 37 37 HOH HOH . H 5 HOH A 20 39 39 HOH HOH . H 5 HOH A 21 40 40 HOH HOH . H 5 HOH A 22 41 41 HOH HOH . H 5 HOH A 23 45 45 HOH HOH . H 5 HOH A 24 46 46 HOH HOH . H 5 HOH A 25 49 49 HOH HOH . H 5 HOH A 26 52 52 HOH HOH . H 5 HOH A 27 53 53 HOH HOH . H 5 HOH A 28 55 55 HOH HOH . H 5 HOH A 29 57 57 HOH HOH . H 5 HOH A 30 58 58 HOH HOH . H 5 HOH A 31 61 61 HOH HOH . H 5 HOH A 32 64 64 HOH HOH . H 5 HOH A 33 67 67 HOH HOH . H 5 HOH A 34 70 70 HOH HOH . H 5 HOH A 35 71 71 HOH HOH . H 5 HOH A 36 72 72 HOH HOH . H 5 HOH A 37 77 77 HOH HOH . H 5 HOH A 38 78 78 HOH HOH . H 5 HOH A 39 80 80 HOH HOH . H 5 HOH A 40 81 81 HOH HOH . H 5 HOH A 41 82 82 HOH HOH . H 5 HOH A 42 85 85 HOH HOH . H 5 HOH A 43 89 89 HOH HOH . H 5 HOH A 44 90 90 HOH HOH . H 5 HOH A 45 91 91 HOH HOH . H 5 HOH A 46 94 94 HOH HOH . H 5 HOH A 47 95 95 HOH HOH . H 5 HOH A 48 97 97 HOH HOH . H 5 HOH A 49 98 98 HOH HOH . H 5 HOH A 50 100 100 HOH HOH . H 5 HOH A 51 102 102 HOH HOH . H 5 HOH A 52 103 103 HOH HOH . H 5 HOH A 53 105 105 HOH HOH . H 5 HOH A 54 106 106 HOH HOH . H 5 HOH A 55 109 109 HOH HOH . H 5 HOH A 56 110 110 HOH HOH . H 5 HOH A 57 111 111 HOH HOH . H 5 HOH A 58 112 112 HOH HOH . H 5 HOH A 59 113 113 HOH HOH . H 5 HOH A 60 118 118 HOH HOH . H 5 HOH A 61 120 120 HOH HOH . H 5 HOH A 62 121 121 HOH HOH . H 5 HOH A 63 122 122 HOH HOH . H 5 HOH A 64 255 255 HOH HOH . H 5 HOH A 65 256 256 HOH HOH . H 5 HOH A 66 257 257 HOH HOH . I 5 HOH D 1 106 106 HOH HOH . I 5 HOH D 2 107 107 HOH HOH . I 5 HOH D 3 108 108 HOH HOH . I 5 HOH D 4 109 109 HOH HOH . I 5 HOH D 5 110 110 HOH HOH . I 5 HOH D 6 111 111 HOH HOH . I 5 HOH D 7 112 112 HOH HOH . I 5 HOH D 8 113 113 HOH HOH . I 5 HOH D 9 114 114 HOH HOH . I 5 HOH D 10 115 115 HOH HOH . I 5 HOH D 11 116 116 HOH HOH . I 5 HOH D 12 117 117 HOH HOH . I 5 HOH D 13 118 118 HOH HOH . I 5 HOH D 14 119 119 HOH HOH . I 5 HOH D 15 120 120 HOH HOH . I 5 HOH D 16 121 121 HOH HOH . I 5 HOH D 17 122 122 HOH HOH . I 5 HOH D 18 123 123 HOH HOH . I 5 HOH D 19 124 124 HOH HOH . I 5 HOH D 20 125 125 HOH HOH . I 5 HOH D 21 126 126 HOH HOH . I 5 HOH D 22 127 127 HOH HOH . I 5 HOH D 23 128 128 HOH HOH . I 5 HOH D 24 129 129 HOH HOH . I 5 HOH D 25 130 130 HOH HOH . I 5 HOH D 26 131 131 HOH HOH . I 5 HOH D 27 132 132 HOH HOH . I 5 HOH D 28 133 133 HOH HOH . I 5 HOH D 29 134 134 HOH HOH . I 5 HOH D 30 135 135 HOH HOH . I 5 HOH D 31 136 136 HOH HOH . I 5 HOH D 32 137 137 HOH HOH . I 5 HOH D 33 138 138 HOH HOH . I 5 HOH D 34 139 139 HOH HOH . I 5 HOH D 35 140 140 HOH HOH . I 5 HOH D 36 141 141 HOH HOH . I 5 HOH D 37 142 142 HOH HOH . I 5 HOH D 38 143 143 HOH HOH . I 5 HOH D 39 144 144 HOH HOH . I 5 HOH D 40 145 145 HOH HOH . I 5 HOH D 41 146 146 HOH HOH . I 5 HOH D 42 147 147 HOH HOH . I 5 HOH D 43 148 148 HOH HOH . I 5 HOH D 44 150 150 HOH HOH . I 5 HOH D 45 152 152 HOH HOH . I 5 HOH D 46 153 153 HOH HOH . I 5 HOH D 47 154 154 HOH HOH . I 5 HOH D 48 155 155 HOH HOH . I 5 HOH D 49 156 156 HOH HOH . I 5 HOH D 50 157 157 HOH HOH . I 5 HOH D 51 158 158 HOH HOH . I 5 HOH D 52 159 159 HOH HOH . I 5 HOH D 53 160 160 HOH HOH . I 5 HOH D 54 161 161 HOH HOH . I 5 HOH D 55 163 163 HOH HOH . I 5 HOH D 56 164 164 HOH HOH . I 5 HOH D 57 165 165 HOH HOH . I 5 HOH D 58 166 166 HOH HOH . I 5 HOH D 59 167 167 HOH HOH . I 5 HOH D 60 168 168 HOH HOH . I 5 HOH D 61 254 254 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 6.489 -1.721 -2.234 1 35.46 ? C1 GOL 252 A 1 HETATM 2 O O1 GOL . . . D 3 7.647 -1.268 -1.615 1 36.08 ? O1 GOL 252 A 1 HETATM 3 C C2 GOL . . . D 3 5.391 -1.785 -1.185 1 38.89 ? C2 GOL 252 A 1 HETATM 4 O O2 GOL . . . D 3 4.674 -0.568 -1.167 1 36.06 ? O2 GOL 252 A 1 HETATM 5 C C3 GOL . . . D 3 4.465 -2.988 -1.428 1 40.24 ? C3 GOL 252 A 1 HETATM 6 O O3 GOL . . . D 3 4.246 -3.189 -2.808 1 40.1 ? O3 GOL 252 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #