data_3T07 # _model_server_result.job_id UnxnQDb6MwNdKtI-OKyuKg _model_server_result.datetime_utc '2024-10-19 13:41:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":586}' # _entry.id 3T07 # _exptl.entry_id 3T07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.175 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,5R)-3,5-bis(6-bromo-1H-indol-3-yl)piperazin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.05 _cell.angle_beta 72.14 _cell.angle_gamma 80.88 _cell.entry_id 3T07 _cell.length_a 83.96 _cell.length_b 111.91 _cell.length_c 112.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N # _chem_comp.formula 'C20 H16 Br2 N4 O' _chem_comp.formula_weight 488.175 _chem_comp.id 09C _chem_comp.mon_nstd_flag . _chem_comp.name (3S,5R)-3,5-bis(6-bromo-1H-indol-3-yl)piperazin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'cis-3,4-dihydrohamacanthin B' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 09C sing 1 n n C1 O1 09C doub 2 n n N1 C2 09C sing 3 n n C2 C16 09C sing 4 n n C2 HA 09C sing 5 n n N2 C1 09C sing 6 n n N3 C7 09C sing 7 n y N4 C18 09C sing 8 n y BR1 C13 09C sing 9 n n C3 C5 09C sing 10 n y C3 HAD 09C sing 11 n n C4 HAE 09C sing 12 n n C5 C19 09C doub 13 n y C5 HAF 09C sing 14 n n C6 C4 09C doub 15 n y C6 HAG 09C sing 16 n n C7 HAH 09C sing 17 n n C8 N4 09C sing 18 n y C8 C16 09C doub 19 n y C8 HAI 09C sing 20 n n C9 C17 09C doub 21 n y C9 HAJ 09C sing 22 n n C10 C14 09C doub 23 n y C10 HAK 09C sing 24 n n C11 C12 09C sing 25 n n C11 N2 09C sing 26 n n C11 H1AL 09C sing 27 n n C11 H2AL 09C sing 28 n n C12 N1 09C sing 29 n n C13 C3 09C doub 30 n y C13 C9 09C sing 31 n y C14 C4 09C sing 32 n y C14 BR2 09C sing 33 n n C15 C7 09C doub 34 n y C15 C12 09C sing 35 n n C16 C20 09C sing 36 n y C17 C19 09C sing 37 n y C17 N3 09C sing 38 n y C18 C20 09C doub 39 n y C18 C10 09C sing 40 n y C19 C15 09C sing 41 n y C20 C6 09C sing 42 n y N1 H12 09C sing 43 n n N2 H13 09C sing 44 n n N3 H14 09C sing 45 n n N4 H15 09C sing 46 n n C12 H16 09C sing 47 n n # _atom_sites.entry_id 3T07 _atom_sites.fract_transf_matrix[1][1] 0.01191 _atom_sites.fract_transf_matrix[1][2] -0.001912 _atom_sites.fract_transf_matrix[1][3] -0.003797 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00905 _atom_sites.fract_transf_matrix[2][3] -0.000195 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 586 1 PO4 PO4 . F 3 09C B 1 586 1 09C 09C . G 2 PO4 B 1 587 2 PO4 PO4 . H 2 PO4 C 1 586 3 PO4 PO4 . I 3 09C D 1 586 2 09C 09C . J 2 PO4 D 1 587 4 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 09C . . . F 3 -9.476 1.163 3.115 1 165.89 ? C1 09C 586 B 1 HETATM 2 N N1 09C . . . F 3 -11.435 1.17 1.863 1 131.71 ? N1 09C 586 B 1 HETATM 3 O O1 09C . . . F 3 -8.882 1.509 4.137 1 182.22 ? O1 09C 586 B 1 HETATM 4 C C2 09C . . . F 3 -10.565 2.059 2.593 1 149 ? C2 09C 586 B 1 HETATM 5 N N2 09C . . . F 3 -9.142 -0.041 2.398 1 174.02 ? N2 09C 586 B 1 HETATM 6 N N3 09C . . . F 3 -14.708 -0.624 1.521 1 160.35 ? N3 09C 586 B 1 HETATM 7 N N4 09C . . . F 3 -13.571 2.407 4.624 1 151.31 ? N4 09C 586 B 1 HETATM 8 BR BR1 09C . . . F 3 -16.339 -4.004 -1.869 1 163.38 ? BR1 09C 586 B 1 HETATM 9 BR BR2 09C . . . F 3 -13.404 6.334 8.021 1 134.72 ? BR2 09C 586 B 1 HETATM 10 C C3 09C . . . F 3 -13.602 -3.048 -1.522 1 144.32 ? C3 09C 586 B 1 HETATM 11 C C4 09C . . . F 3 -11.327 5.464 6.084 1 132.79 ? C4 09C 586 B 1 HETATM 12 C C5 09C . . . F 3 -12.649 -2.243 -0.877 1 143.26 ? C5 09C 586 B 1 HETATM 13 C C6 09C . . . F 3 -10.849 4.613 5.063 1 135.19 ? C6 09C 586 B 1 HETATM 14 C C7 09C . . . F 3 -13.546 -0.072 1.822 1 177.01 ? C7 09C 586 B 1 HETATM 15 C C8 09C . . . F 3 -12.779 1.888 3.706 1 148.85 ? C8 09C 586 B 1 HETATM 16 C C9 09C . . . F 3 -15.394 -2.222 -0.106 1 129.34 ? C9 09C 586 B 1 HETATM 17 C C10 09C . . . F 3 -13.395 4.266 6.169 1 126.29 ? C10 09C 586 B 1 HETATM 18 C C11 09C . . . F 3 -9.846 -0.494 1.139 1 162.28 ? C11 09C 586 B 1 HETATM 19 C C12 09C . . . F 3 -11.263 0.007 1.261 1 148.23 ? C12 09C 586 B 1 HETATM 20 C C13 09C . . . F 3 -14.948 -3.016 -1.119 1 136.87 ? C13 09C 586 B 1 HETATM 21 C C14 09C . . . F 3 -12.607 5.287 6.638 1 125.29 ? C14 09C 586 B 1 HETATM 22 C C15 09C . . . F 3 -12.544 -0.502 1.039 1 166.52 ? C15 09C 586 B 1 HETATM 23 C C16 09C . . . F 3 -11.605 2.527 3.658 1 151.87 ? C16 09C 586 B 1 HETATM 24 C C17 09C . . . F 3 -14.475 -1.446 0.524 1 145.88 ? C17 09C 586 B 1 HETATM 25 C C18 09C . . . F 3 -12.941 3.431 5.175 1 141.61 ? C18 09C 586 B 1 HETATM 26 C C19 09C . . . F 3 -13.105 -1.433 0.164 1 152.2 ? C19 09C 586 B 1 HETATM 27 C C20 09C . . . F 3 -11.669 3.576 4.598 1 145.38 ? C20 09C 586 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #