data_3T07 # _model_server_result.job_id 9ouV7X2F5YIL-6IUNEvPpw _model_server_result.datetime_utc '2024-10-19 13:40:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":586}' # _entry.id 3T07 # _exptl.entry_id 3T07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.175 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,5R)-3,5-bis(6-bromo-1H-indol-3-yl)piperazin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.05 _cell.angle_beta 72.14 _cell.angle_gamma 80.88 _cell.entry_id 3T07 _cell.length_a 83.96 _cell.length_b 111.91 _cell.length_c 112.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N # _chem_comp.formula 'C20 H16 Br2 N4 O' _chem_comp.formula_weight 488.175 _chem_comp.id 09C _chem_comp.mon_nstd_flag . _chem_comp.name (3S,5R)-3,5-bis(6-bromo-1H-indol-3-yl)piperazin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'cis-3,4-dihydrohamacanthin B' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 09C sing 1 n n C1 O1 09C doub 2 n n N1 C2 09C sing 3 n n C2 C16 09C sing 4 n n C2 HA 09C sing 5 n n N2 C1 09C sing 6 n n N3 C7 09C sing 7 n y N4 C18 09C sing 8 n y BR1 C13 09C sing 9 n n C3 C5 09C sing 10 n y C3 HAD 09C sing 11 n n C4 HAE 09C sing 12 n n C5 C19 09C doub 13 n y C5 HAF 09C sing 14 n n C6 C4 09C doub 15 n y C6 HAG 09C sing 16 n n C7 HAH 09C sing 17 n n C8 N4 09C sing 18 n y C8 C16 09C doub 19 n y C8 HAI 09C sing 20 n n C9 C17 09C doub 21 n y C9 HAJ 09C sing 22 n n C10 C14 09C doub 23 n y C10 HAK 09C sing 24 n n C11 C12 09C sing 25 n n C11 N2 09C sing 26 n n C11 H1AL 09C sing 27 n n C11 H2AL 09C sing 28 n n C12 N1 09C sing 29 n n C13 C3 09C doub 30 n y C13 C9 09C sing 31 n y C14 C4 09C sing 32 n y C14 BR2 09C sing 33 n n C15 C7 09C doub 34 n y C15 C12 09C sing 35 n n C16 C20 09C sing 36 n y C17 C19 09C sing 37 n y C17 N3 09C sing 38 n y C18 C20 09C doub 39 n y C18 C10 09C sing 40 n y C19 C15 09C sing 41 n y C20 C6 09C sing 42 n y N1 H12 09C sing 43 n n N2 H13 09C sing 44 n n N3 H14 09C sing 45 n n N4 H15 09C sing 46 n n C12 H16 09C sing 47 n n # _atom_sites.entry_id 3T07 _atom_sites.fract_transf_matrix[1][1] 0.01191 _atom_sites.fract_transf_matrix[1][2] -0.001912 _atom_sites.fract_transf_matrix[1][3] -0.003797 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00905 _atom_sites.fract_transf_matrix[2][3] -0.000195 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 586 1 PO4 PO4 . F 3 09C B 1 586 1 09C 09C . G 2 PO4 B 1 587 2 PO4 PO4 . H 2 PO4 C 1 586 3 PO4 PO4 . I 3 09C D 1 586 2 09C 09C . J 2 PO4 D 1 587 4 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 09C . . . I 3 9.942 0.712 -1.393 1 170.75 ? C1 09C 586 D 1 HETATM 2 N N1 09C . . . I 3 11.304 -1.119 -2.074 1 123.97 ? N1 09C 586 D 1 HETATM 3 O O1 09C . . . I 3 9.735 1.711 -0.695 1 182.28 ? O1 09C 586 D 1 HETATM 4 C C2 09C . . . I 3 11.053 -0.212 -0.977 1 155.91 ? C2 09C 586 D 1 HETATM 5 N N2 09C . . . I 3 9.125 0.388 -2.532 1 175.76 ? N2 09C 586 D 1 HETATM 6 N N3 09C . . . I 3 13.702 -2.557 -4.402 1 180.37 ? N3 09C 586 D 1 HETATM 7 N N4 09C . . . I 3 14.604 0.569 -1.524 1 175.67 ? N4 09C 586 D 1 HETATM 8 BR BR1 09C . . . I 3 13.501 -5.943 -8.247 1 150.73 ? BR1 09C 586 D 1 HETATM 9 BR BR2 09C . . . I 3 16.442 4.142 1.691 1 152.12 ? BR2 09C 586 D 1 HETATM 10 C C3 09C . . . I 3 11.228 -4.648 -6.81 1 156.39 ? C3 09C 586 D 1 HETATM 11 C C4 09C . . . I 3 13.714 3.052 1.539 1 157.22 ? C4 09C 586 D 1 HETATM 12 C C5 09C . . . I 3 10.719 -3.77 -5.823 1 161.56 ? C5 09C 586 D 1 HETATM 13 C C6 09C . . . I 3 12.732 2.206 0.993 1 148.3 ? C6 09C 586 D 1 HETATM 14 C C7 09C . . . I 3 12.867 -1.878 -3.649 1 175.08 ? C7 09C 586 D 1 HETATM 15 C C8 09C . . . I 3 13.439 -0.031 -1.716 1 182.46 ? C8 09C 586 D 1 HETATM 16 C C9 09C . . . I 3 13.477 -4.128 -6.186 1 150.86 ? C9 09C 586 D 1 HETATM 17 C C10 09C . . . I 3 15.392 2.238 0.01 1 142.46 ? C10 09C 586 D 1 HETATM 18 C C11 09C . . . I 3 9.289 -0.833 -3.41 1 160.98 ? C11 09C 586 D 1 HETATM 19 C C12 09C . . . I 3 10.663 -1.435 -3.181 1 150 ? C12 09C 586 D 1 HETATM 20 C C13 09C . . . I 3 12.615 -4.821 -6.989 1 150.47 ? C13 09C 586 D 1 HETATM 21 C C14 09C . . . I 3 15.032 3.059 1.046 1 150.28 ? C14 09C 586 D 1 HETATM 22 C C15 09C . . . I 3 11.598 -2.14 -3.943 1 169.88 ? C15 09C 586 D 1 HETATM 23 C C16 09C . . . I 3 12.486 0.423 -0.888 1 174.02 ? C16 09C 586 D 1 HETATM 24 C C17 09C . . . I 3 12.989 -3.28 -5.231 1 161.54 ? C17 09C 586 D 1 HETATM 25 C C18 09C . . . I 3 14.443 1.414 -0.527 1 161.6 ? C18 09C 586 D 1 HETATM 26 C C19 09C . . . I 3 11.618 -3.066 -5.009 1 167.43 ? C19 09C 586 D 1 HETATM 27 C C20 09C . . . I 3 13.108 1.375 -0.062 1 163.42 ? C20 09C 586 D 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #