data_3T0K # _model_server_result.job_id YHUVrLuDd6w9eqpbSC1Dcg _model_server_result.datetime_utc '2024-11-13 04:55:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 3T0K # _exptl.entry_id 3T0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3T0K _cell.length_a 149.96 _cell.length_b 149.96 _cell.length_c 82.05 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 359 A CYS 356 1_555 E S H2S . A H2S 504 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.05 ? covale ? covale2 A SG CYS 163 A CYS 160 1_555 D S1 S3H . A S3H 503 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.059 ? covale ? covale3 A SG CYS 359 A CYS 356 1_555 D S3 S3H . A S3H 503 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.071 ? covale ? covale4 A SG CYS 163 A CYS 160 1_555 F S H2S . A H2S 505 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C19 H30 O4' _chem_comp.formula_weight 322.439 _chem_comp.id DCQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms decylubiquinone # _atom_sites.entry_id 3T0K _atom_sites.fract_transf_matrix[1][1] 0.006668 _atom_sites.fract_transf_matrix[1][2] 0.00385 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 DCQ A 1 502 502 DCQ DCQ . D 4 S3H A 1 503 503 S3H S3H . E 5 H2S A 1 504 504 H2S H2S . F 5 H2S A 1 505 505 H2S H2S . G 5 H2S A 1 506 506 H2S H2S . H 5 H2S A 1 507 507 H2S H2S . I 6 SO4 A 1 508 508 SO4 SO4 . J 7 HOH A 1 509 509 HOH HOH . J 7 HOH A 2 510 510 HOH HOH . J 7 HOH A 3 511 511 HOH HOH . J 7 HOH A 4 512 512 HOH HOH . J 7 HOH A 5 513 513 HOH HOH . J 7 HOH A 6 514 514 HOH HOH . J 7 HOH A 7 515 515 HOH HOH . J 7 HOH A 8 516 516 HOH HOH . J 7 HOH A 9 517 517 HOH HOH . J 7 HOH A 10 518 518 HOH HOH . J 7 HOH A 11 519 519 HOH HOH . J 7 HOH A 12 520 520 HOH HOH . J 7 HOH A 13 521 521 HOH HOH . J 7 HOH A 14 522 522 HOH HOH . J 7 HOH A 15 523 523 HOH HOH . J 7 HOH A 16 525 525 HOH HOH . J 7 HOH A 17 526 526 HOH HOH . J 7 HOH A 18 528 528 HOH HOH . J 7 HOH A 19 529 529 HOH HOH . J 7 HOH A 20 530 530 HOH HOH . J 7 HOH A 21 531 531 HOH HOH . J 7 HOH A 22 532 532 HOH HOH . J 7 HOH A 23 533 533 HOH HOH . J 7 HOH A 24 534 534 HOH HOH . J 7 HOH A 25 535 535 HOH HOH . J 7 HOH A 26 536 536 HOH HOH . J 7 HOH A 27 537 537 HOH HOH . J 7 HOH A 28 538 538 HOH HOH . J 7 HOH A 29 539 539 HOH HOH . J 7 HOH A 30 540 540 HOH HOH . J 7 HOH A 31 541 541 HOH HOH . J 7 HOH A 32 542 542 HOH HOH . J 7 HOH A 33 543 543 HOH HOH . J 7 HOH A 34 544 544 HOH HOH . J 7 HOH A 35 545 545 HOH HOH . J 7 HOH A 36 546 546 HOH HOH . J 7 HOH A 37 547 547 HOH HOH . J 7 HOH A 38 548 548 HOH HOH . J 7 HOH A 39 549 549 HOH HOH . J 7 HOH A 40 550 550 HOH HOH . J 7 HOH A 41 551 551 HOH HOH . J 7 HOH A 42 552 552 HOH HOH . J 7 HOH A 43 553 553 HOH HOH . J 7 HOH A 44 554 554 HOH HOH . J 7 HOH A 45 555 555 HOH HOH . J 7 HOH A 46 556 556 HOH HOH . J 7 HOH A 47 557 557 HOH HOH . J 7 HOH A 48 558 558 HOH HOH . J 7 HOH A 49 559 559 HOH HOH . J 7 HOH A 50 560 560 HOH HOH . J 7 HOH A 51 561 561 HOH HOH . J 7 HOH A 52 562 562 HOH HOH . J 7 HOH A 53 563 563 HOH HOH . J 7 HOH A 54 564 564 HOH HOH . J 7 HOH A 55 565 565 HOH HOH . J 7 HOH A 56 566 566 HOH HOH . J 7 HOH A 57 567 567 HOH HOH . J 7 HOH A 58 568 568 HOH HOH . J 7 HOH A 59 569 569 HOH HOH . J 7 HOH A 60 570 570 HOH HOH . J 7 HOH A 61 571 571 HOH HOH . J 7 HOH A 62 572 572 HOH HOH . J 7 HOH A 63 573 573 HOH HOH . J 7 HOH A 64 574 574 HOH HOH . J 7 HOH A 65 575 575 HOH HOH . J 7 HOH A 66 576 576 HOH HOH . J 7 HOH A 67 577 577 HOH HOH . J 7 HOH A 68 578 578 HOH HOH . J 7 HOH A 69 579 579 HOH HOH . J 7 HOH A 70 580 580 HOH HOH . J 7 HOH A 71 581 581 HOH HOH . J 7 HOH A 72 582 582 HOH HOH . J 7 HOH A 73 583 583 HOH HOH . J 7 HOH A 74 584 584 HOH HOH . J 7 HOH A 75 585 585 HOH HOH . J 7 HOH A 76 586 586 HOH HOH . J 7 HOH A 77 587 587 HOH HOH . J 7 HOH A 78 588 588 HOH HOH . J 7 HOH A 79 589 589 HOH HOH . J 7 HOH A 80 590 590 HOH HOH . J 7 HOH A 81 591 591 HOH HOH . J 7 HOH A 82 592 592 HOH HOH . J 7 HOH A 83 593 593 HOH HOH . J 7 HOH A 84 594 594 HOH HOH . J 7 HOH A 85 595 595 HOH HOH . J 7 HOH A 86 596 596 HOH HOH . J 7 HOH A 87 597 597 HOH HOH . J 7 HOH A 88 598 598 HOH HOH . J 7 HOH A 89 599 599 HOH HOH . J 7 HOH A 90 600 600 HOH HOH . J 7 HOH A 91 601 601 HOH HOH . J 7 HOH A 92 602 602 HOH HOH . J 7 HOH A 93 603 603 HOH HOH . J 7 HOH A 94 604 604 HOH HOH . J 7 HOH A 95 605 605 HOH HOH . J 7 HOH A 96 606 606 HOH HOH . J 7 HOH A 97 607 607 HOH HOH . J 7 HOH A 98 608 608 HOH HOH . J 7 HOH A 99 609 609 HOH HOH . J 7 HOH A 100 610 610 HOH HOH . J 7 HOH A 101 611 611 HOH HOH . J 7 HOH A 102 612 612 HOH HOH . J 7 HOH A 103 613 613 HOH HOH . J 7 HOH A 104 614 614 HOH HOH . J 7 HOH A 105 615 615 HOH HOH . J 7 HOH A 106 616 616 HOH HOH . J 7 HOH A 107 617 617 HOH HOH . J 7 HOH A 108 618 618 HOH HOH . J 7 HOH A 109 619 619 HOH HOH . J 7 HOH A 110 620 620 HOH HOH . J 7 HOH A 111 621 621 HOH HOH . J 7 HOH A 112 622 622 HOH HOH . J 7 HOH A 113 623 623 HOH HOH . J 7 HOH A 114 624 624 HOH HOH . J 7 HOH A 115 625 625 HOH HOH . J 7 HOH A 116 626 626 HOH HOH . J 7 HOH A 117 627 627 HOH HOH . J 7 HOH A 118 628 628 HOH HOH . J 7 HOH A 119 629 629 HOH HOH . J 7 HOH A 120 630 630 HOH HOH . J 7 HOH A 121 632 632 HOH HOH . J 7 HOH A 122 633 633 HOH HOH . J 7 HOH A 123 634 634 HOH HOH . J 7 HOH A 124 635 635 HOH HOH . J 7 HOH A 125 636 636 HOH HOH . J 7 HOH A 126 637 637 HOH HOH . J 7 HOH A 127 638 638 HOH HOH . J 7 HOH A 128 639 639 HOH HOH . J 7 HOH A 129 640 640 HOH HOH . J 7 HOH A 130 641 641 HOH HOH . J 7 HOH A 131 642 642 HOH HOH . J 7 HOH A 132 643 643 HOH HOH . J 7 HOH A 133 644 644 HOH HOH . J 7 HOH A 134 645 645 HOH HOH . J 7 HOH A 135 646 646 HOH HOH . J 7 HOH A 136 647 647 HOH HOH . J 7 HOH A 137 648 648 HOH HOH . J 7 HOH A 138 649 649 HOH HOH . J 7 HOH A 139 650 650 HOH HOH . J 7 HOH A 140 651 651 HOH HOH . J 7 HOH A 141 652 652 HOH HOH . J 7 HOH A 142 653 653 HOH HOH . J 7 HOH A 143 654 654 HOH HOH . J 7 HOH A 144 655 655 HOH HOH . J 7 HOH A 145 656 656 HOH HOH . J 7 HOH A 146 657 657 HOH HOH . J 7 HOH A 147 658 658 HOH HOH . J 7 HOH A 148 659 659 HOH HOH . J 7 HOH A 149 661 661 HOH HOH . J 7 HOH A 150 662 662 HOH HOH . J 7 HOH A 151 663 663 HOH HOH . J 7 HOH A 152 664 664 HOH HOH . J 7 HOH A 153 665 665 HOH HOH . J 7 HOH A 154 666 666 HOH HOH . J 7 HOH A 155 667 667 HOH HOH . J 7 HOH A 156 668 668 HOH HOH . J 7 HOH A 157 669 669 HOH HOH . J 7 HOH A 158 670 670 HOH HOH . J 7 HOH A 159 671 671 HOH HOH . J 7 HOH A 160 672 672 HOH HOH . J 7 HOH A 161 673 673 HOH HOH . J 7 HOH A 162 674 674 HOH HOH . J 7 HOH A 163 675 675 HOH HOH . J 7 HOH A 164 676 676 HOH HOH . J 7 HOH A 165 677 677 HOH HOH . J 7 HOH A 166 678 678 HOH HOH . J 7 HOH A 167 679 679 HOH HOH . J 7 HOH A 168 680 680 HOH HOH . J 7 HOH A 169 681 681 HOH HOH . J 7 HOH A 170 682 682 HOH HOH . J 7 HOH A 171 683 683 HOH HOH . J 7 HOH A 172 684 684 HOH HOH . J 7 HOH A 173 685 685 HOH HOH . J 7 HOH A 174 686 686 HOH HOH . J 7 HOH A 175 687 687 HOH HOH . J 7 HOH A 176 688 688 HOH HOH . J 7 HOH A 177 689 689 HOH HOH . J 7 HOH A 178 690 690 HOH HOH . J 7 HOH A 179 691 691 HOH HOH . J 7 HOH A 180 692 692 HOH HOH . J 7 HOH A 181 693 693 HOH HOH . J 7 HOH A 182 694 694 HOH HOH . J 7 HOH A 183 695 695 HOH HOH . J 7 HOH A 184 696 696 HOH HOH . J 7 HOH A 185 697 697 HOH HOH . J 7 HOH A 186 698 698 HOH HOH . J 7 HOH A 187 699 699 HOH HOH . J 7 HOH A 188 701 701 HOH HOH . J 7 HOH A 189 702 702 HOH HOH . J 7 HOH A 190 703 703 HOH HOH . J 7 HOH A 191 704 704 HOH HOH . J 7 HOH A 192 705 705 HOH HOH . J 7 HOH A 193 706 706 HOH HOH . J 7 HOH A 194 707 707 HOH HOH . J 7 HOH A 195 708 708 HOH HOH . J 7 HOH A 196 709 709 HOH HOH . J 7 HOH A 197 710 710 HOH HOH . J 7 HOH A 198 711 711 HOH HOH . J 7 HOH A 199 712 712 HOH HOH . J 7 HOH A 200 713 713 HOH HOH . J 7 HOH A 201 714 714 HOH HOH . J 7 HOH A 202 715 715 HOH HOH . J 7 HOH A 203 716 716 HOH HOH . J 7 HOH A 204 717 717 HOH HOH . J 7 HOH A 205 718 718 HOH HOH . J 7 HOH A 206 719 719 HOH HOH . J 7 HOH A 207 720 720 HOH HOH . J 7 HOH A 208 721 721 HOH HOH . J 7 HOH A 209 722 722 HOH HOH . J 7 HOH A 210 723 723 HOH HOH . J 7 HOH A 211 724 724 HOH HOH . J 7 HOH A 212 725 725 HOH HOH . J 7 HOH A 213 726 726 HOH HOH . J 7 HOH A 214 727 727 HOH HOH . J 7 HOH A 215 728 728 HOH HOH . J 7 HOH A 216 729 729 HOH HOH . J 7 HOH A 217 730 730 HOH HOH . J 7 HOH A 218 731 731 HOH HOH . J 7 HOH A 219 732 732 HOH HOH . J 7 HOH A 220 733 733 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 DCQ . . . C 3 40.385 -13.156 7.418 0.88 71.79 ? O2 DCQ 502 A 1 HETATM 2 C C2 DCQ . . . C 3 41.551 -12.412 7.405 0.88 71.6 ? C2 DCQ 502 A 1 HETATM 3 C C3 DCQ . . . C 3 42.621 -12.79 8.208 0.88 68.38 ? C3 DCQ 502 A 1 HETATM 4 O O3 DCQ . . . C 3 42.53 -13.916 9.006 0.88 72.86 ? O3 DCQ 502 A 1 HETATM 5 C C3M DCQ . . . C 3 42.721 -15.18 8.473 0.88 68.31 ? C3M DCQ 502 A 1 HETATM 6 C C4 DCQ . . . C 3 43.789 -12.03 8.192 0.88 71.76 ? C4 DCQ 502 A 1 HETATM 7 O O4 DCQ . . . C 3 44.825 -12.332 9.035 0.88 66.69 ? O4 DCQ 502 A 1 HETATM 8 C C4M DCQ . . . C 3 45.006 -11.511 10.127 0.88 54.47 ? C4M DCQ 502 A 1 HETATM 9 C C5 DCQ . . . C 3 43.904 -10.903 7.384 0.88 80.67 ? C5 DCQ 502 A 1 HETATM 10 O O5 DCQ . . . C 3 45.087 -10.192 7.377 0.88 76.72 ? O5 DCQ 502 A 1 HETATM 11 C C1 DCQ . . . C 3 41.666 -11.28 6.597 0.88 74.18 ? C1 DCQ 502 A 1 HETATM 12 C C1M DCQ . . . C 3 40.525 -10.863 5.746 0.88 79.88 ? C1M DCQ 502 A 1 HETATM 13 C C6 DCQ . . . C 3 42.835 -10.524 6.583 0.88 72.5 ? C6 DCQ 502 A 1 HETATM 14 C C7 DCQ . . . C 3 42.936 -9.295 5.727 0.88 75.21 ? C7 DCQ 502 A 1 HETATM 15 C C8 DCQ . . . C 3 43.487 -8.044 6.357 0.88 77.23 ? C8 DCQ 502 A 1 HETATM 16 C C9 DCQ . . . C 3 42.539 -6.953 6.761 0.88 73.51 ? C9 DCQ 502 A 1 HETATM 17 C C10 DCQ . . . C 3 42.288 -5.842 5.784 0.88 78.57 ? C10 DCQ 502 A 1 HETATM 18 C C11 DCQ . . . C 3 41.428 -6.129 4.587 0.88 79.83 ? C11 DCQ 502 A 1 HETATM 19 C C12 DCQ . . . C 3 42.102 -6.503 3.298 0.88 79.62 ? C12 DCQ 502 A 1 HETATM 20 C C13 DCQ . . . C 3 42.013 -5.547 2.143 0.88 82.85 ? C13 DCQ 502 A 1 HETATM 21 C C14 DCQ . . . C 3 41.208 -5.966 0.949 0.88 77.68 ? C14 DCQ 502 A 1 HETATM 22 C C15 DCQ . . . C 3 41.762 -5.704 -0.415 0.88 74.48 ? C15 DCQ 502 A 1 HETATM 23 C C16 DCQ . . . C 3 42.158 -4.306 -0.762 0.88 75.69 ? C16 DCQ 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #