data_3T0Q
#
_model_server_result.job_id            zBXUrRQFqwBpM1ibpwjquA 
_model_server_result.datetime_utc      '2024-11-27 16:05:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t0q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":999}' 
#
_entry.id    3T0Q 
#
_exptl.entry_id    3T0Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3T0Q 
_cell.length_a            44.866 
_cell.length_b            84.623 
_cell.length_c            101.141 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T0Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O HOH . A HOH 16 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc2 E O HOH . A HOH 17 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc3 E O HOH . A HOH 18 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc4 E O HOH . A HOH 91 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc5 A OG1 THR 100 A THR 460 1_555 B MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc6 B MG MG . A MG 997 1_555 C O2B ADP . A ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3T0Q 
_atom_sites.fract_transf_matrix[1][1]    0.022289 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009887 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 997 997 MG MG . 
C 3 ADP A 1 999 999 ADP ADP . 
D 4 EDO A 1 1 1 EDO EDO . 
E 5 HOH A 1 2 2 HOH HOH . 
E 5 HOH A 2 3 3 HOH HOH . 
E 5 HOH A 3 4 4 HOH HOH . 
E 5 HOH A 4 5 5 HOH HOH . 
E 5 HOH A 5 6 6 HOH HOH . 
E 5 HOH A 6 7 7 HOH HOH . 
E 5 HOH A 7 8 8 HOH HOH . 
E 5 HOH A 8 9 9 HOH HOH . 
E 5 HOH A 9 10 10 HOH HOH . 
E 5 HOH A 10 11 11 HOH HOH . 
E 5 HOH A 11 12 12 HOH HOH . 
E 5 HOH A 12 13 13 HOH HOH . 
E 5 HOH A 13 14 14 HOH HOH . 
E 5 HOH A 14 16 16 HOH HOH . 
E 5 HOH A 15 17 17 HOH HOH . 
E 5 HOH A 16 18 18 HOH HOH . 
E 5 HOH A 17 19 19 HOH HOH . 
E 5 HOH A 18 20 20 HOH HOH . 
E 5 HOH A 19 21 21 HOH HOH . 
E 5 HOH A 20 23 23 HOH HOH . 
E 5 HOH A 21 24 24 HOH HOH . 
E 5 HOH A 22 25 25 HOH HOH . 
E 5 HOH A 23 26 26 HOH HOH . 
E 5 HOH A 24 27 27 HOH HOH . 
E 5 HOH A 25 28 28 HOH HOH . 
E 5 HOH A 26 29 29 HOH HOH . 
E 5 HOH A 27 30 30 HOH HOH . 
E 5 HOH A 28 31 31 HOH HOH . 
E 5 HOH A 29 32 32 HOH HOH . 
E 5 HOH A 30 33 33 HOH HOH . 
E 5 HOH A 31 34 34 HOH HOH . 
E 5 HOH A 32 35 35 HOH HOH . 
E 5 HOH A 33 36 36 HOH HOH . 
E 5 HOH A 34 37 37 HOH HOH . 
E 5 HOH A 35 38 38 HOH HOH . 
E 5 HOH A 36 39 39 HOH HOH . 
E 5 HOH A 37 40 40 HOH HOH . 
E 5 HOH A 38 41 41 HOH HOH . 
E 5 HOH A 39 42 42 HOH HOH . 
E 5 HOH A 40 43 43 HOH HOH . 
E 5 HOH A 41 44 44 HOH HOH . 
E 5 HOH A 42 45 45 HOH HOH . 
E 5 HOH A 43 46 46 HOH HOH . 
E 5 HOH A 44 47 47 HOH HOH . 
E 5 HOH A 45 48 48 HOH HOH . 
E 5 HOH A 46 49 49 HOH HOH . 
E 5 HOH A 47 50 50 HOH HOH . 
E 5 HOH A 48 51 51 HOH HOH . 
E 5 HOH A 49 52 52 HOH HOH . 
E 5 HOH A 50 53 53 HOH HOH . 
E 5 HOH A 51 54 54 HOH HOH . 
E 5 HOH A 52 55 55 HOH HOH . 
E 5 HOH A 53 57 57 HOH HOH . 
E 5 HOH A 54 58 58 HOH HOH . 
E 5 HOH A 55 59 59 HOH HOH . 
E 5 HOH A 56 61 61 HOH HOH . 
E 5 HOH A 57 62 62 HOH HOH . 
E 5 HOH A 58 63 63 HOH HOH . 
E 5 HOH A 59 64 64 HOH HOH . 
E 5 HOH A 60 65 65 HOH HOH . 
E 5 HOH A 61 66 66 HOH HOH . 
E 5 HOH A 62 67 67 HOH HOH . 
E 5 HOH A 63 68 68 HOH HOH . 
E 5 HOH A 64 69 69 HOH HOH . 
E 5 HOH A 65 70 70 HOH HOH . 
E 5 HOH A 66 71 71 HOH HOH . 
E 5 HOH A 67 72 72 HOH HOH . 
E 5 HOH A 68 75 75 HOH HOH . 
E 5 HOH A 69 76 76 HOH HOH . 
E 5 HOH A 70 77 77 HOH HOH . 
E 5 HOH A 71 78 78 HOH HOH . 
E 5 HOH A 72 79 79 HOH HOH . 
E 5 HOH A 73 80 80 HOH HOH . 
E 5 HOH A 74 81 81 HOH HOH . 
E 5 HOH A 75 82 82 HOH HOH . 
E 5 HOH A 76 83 83 HOH HOH . 
E 5 HOH A 77 84 84 HOH HOH . 
E 5 HOH A 78 85 85 HOH HOH . 
E 5 HOH A 79 86 86 HOH HOH . 
E 5 HOH A 80 87 87 HOH HOH . 
E 5 HOH A 81 88 88 HOH HOH . 
E 5 HOH A 82 89 89 HOH HOH . 
E 5 HOH A 83 90 90 HOH HOH . 
E 5 HOH A 84 91 91 HOH HOH . 
E 5 HOH A 85 92 92 HOH HOH . 
E 5 HOH A 86 93 93 HOH HOH . 
E 5 HOH A 87 94 94 HOH HOH . 
E 5 HOH A 88 95 95 HOH HOH . 
E 5 HOH A 89 96 96 HOH HOH . 
E 5 HOH A 90 97 97 HOH HOH . 
E 5 HOH A 91 98 98 HOH HOH . 
E 5 HOH A 92 100 100 HOH HOH . 
E 5 HOH A 93 101 101 HOH HOH . 
E 5 HOH A 94 102 102 HOH HOH . 
E 5 HOH A 95 103 103 HOH HOH . 
E 5 HOH A 96 710 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -7.093 -11.601 -26.361 1 20.89 ? PB ADP 999 A 1 
HETATM 2 O O1B ADP . . . C 3 -5.997 -10.873 -27.1 1 22.28 ? O1B ADP 999 A 1 
HETATM 3 O O2B ADP . . . C 3 -6.92 -11.634 -24.87 1 21.72 ? O2B ADP 999 A 1 
HETATM 4 O O3B ADP . . . C 3 -8.482 -11.238 -26.826 1 23.89 ? O3B ADP 999 A 1 
HETATM 5 P PA ADP . . . C 3 -6.825 -14.482 -25.965 1 21.66 ? PA ADP 999 A 1 
HETATM 6 O O1A ADP . . . C 3 -5.779 -14.573 -24.884 1 23.8 ? O1A ADP 999 A 1 
HETATM 7 O O2A ADP . . . C 3 -8.284 -14.689 -25.663 1 25.91 ? O2A ADP 999 A 1 
HETATM 8 O O3A ADP . . . C 3 -6.76 -13.118 -26.83 1 26.44 ? O3A ADP 999 A 1 
HETATM 9 O O5' ADP . . . C 3 -6.356 -15.565 -27.072 1 27.2 ? O5' ADP 999 A 1 
HETATM 10 C C5' ADP . . . C 3 -7.19 -15.966 -28.178 1 25.18 ? C5' ADP 999 A 1 
HETATM 11 C C4' ADP . . . C 3 -7.17 -17.492 -28.346 1 26.36 ? C4' ADP 999 A 1 
HETATM 12 O O4' ADP . . . C 3 -5.881 -17.999 -28.72 1 20.37 ? O4' ADP 999 A 1 
HETATM 13 C C3' ADP . . . C 3 -7.519 -18.191 -27.036 1 28.72 ? C3' ADP 999 A 1 
HETATM 14 O O3' ADP . . . C 3 -8.256 -19.366 -27.376 1 32.38 ? O3' ADP 999 A 1 
HETATM 15 C C2' ADP . . . C 3 -6.179 -18.557 -26.442 1 18.81 ? C2' ADP 999 A 1 
HETATM 16 O O2' ADP . . . C 3 -6.253 -19.736 -25.662 1 28.47 ? O2' ADP 999 A 1 
HETATM 17 C C1' ADP . . . C 3 -5.312 -18.786 -27.659 1 22.9 ? C1' ADP 999 A 1 
HETATM 18 N N9 ADP . . . C 3 -3.908 -18.338 -27.501 1 22.3 ? N9 ADP 999 A 1 
HETATM 19 C C8 ADP . . . C 3 -3.492 -17.054 -27.422 1 19.66 ? C8 ADP 999 A 1 
HETATM 20 N N7 ADP . . . C 3 -2.145 -16.991 -27.32 1 20.64 ? N7 ADP 999 A 1 
HETATM 21 C C5 ADP . . . C 3 -1.687 -18.256 -27.352 1 20.26 ? C5 ADP 999 A 1 
HETATM 22 C C6 ADP . . . C 3 -0.367 -18.909 -27.293 1 24.79 ? C6 ADP 999 A 1 
HETATM 23 N N6 ADP . . . C 3 0.753 -18.165 -27.191 1 24.81 ? N6 ADP 999 A 1 
HETATM 24 N N1 ADP . . . C 3 -0.314 -20.264 -27.355 1 28.36 ? N1 ADP 999 A 1 
HETATM 25 C C2 ADP . . . C 3 -1.433 -20.997 -27.468 1 25.83 ? C2 ADP 999 A 1 
HETATM 26 N N3 ADP . . . C 3 -2.666 -20.478 -27.524 1 24.74 ? N3 ADP 999 A 1 
HETATM 27 C C4 ADP . . . C 3 -2.85 -19.137 -27.476 1 20.89 ? C4 ADP 999 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           27 
#