data_3T0V # _model_server_result.job_id 9FYocV79NE3M8wjnojzDDQ _model_server_result.datetime_utc '2024-11-23 00:40:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 3T0V # _exptl.entry_id 3T0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T0V _cell.length_a 83.663 _cell.length_b 93.639 _cell.length_c 30.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 23 1_555 A SG CYS 89 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PRO 2 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 3T0V _atom_sites.fract_transf_matrix[1][1] 0.011953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.032709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE A 1 201 1 1PE 1PE . C 3 PE3 A 1 202 1 PE3 PE3 . D 4 EDO A 1 203 1 EDO EDO . E 4 EDO A 1 204 2 EDO EDO . F 4 EDO A 1 205 4 EDO EDO . G 5 SO4 A 1 206 1 SO4 SO4 . H 6 TRS A 1 207 1 TRS TRS . I 7 HOH A 1 301 10 HOH HOH . I 7 HOH A 2 302 119 HOH HOH . I 7 HOH A 3 303 120 HOH HOH . I 7 HOH A 4 304 121 HOH HOH . I 7 HOH A 5 305 122 HOH HOH . I 7 HOH A 6 306 1 HOH HOH . I 7 HOH A 7 307 124 HOH HOH . I 7 HOH A 8 308 125 HOH HOH . I 7 HOH A 9 309 126 HOH HOH . I 7 HOH A 10 310 127 HOH HOH . I 7 HOH A 11 311 128 HOH HOH . I 7 HOH A 12 312 129 HOH HOH . I 7 HOH A 13 313 130 HOH HOH . I 7 HOH A 14 314 131 HOH HOH . I 7 HOH A 15 315 132 HOH HOH . I 7 HOH A 16 316 133 HOH HOH . I 7 HOH A 17 317 134 HOH HOH . I 7 HOH A 18 318 135 HOH HOH . I 7 HOH A 19 319 136 HOH HOH . I 7 HOH A 20 320 2 HOH HOH . I 7 HOH A 21 321 3 HOH HOH . I 7 HOH A 22 322 4 HOH HOH . I 7 HOH A 23 323 5 HOH HOH . I 7 HOH A 24 324 6 HOH HOH . I 7 HOH A 25 325 7 HOH HOH . I 7 HOH A 26 326 8 HOH HOH . I 7 HOH A 27 327 9 HOH HOH . I 7 HOH A 28 328 11 HOH HOH . I 7 HOH A 29 329 12 HOH HOH . I 7 HOH A 30 330 13 HOH HOH . I 7 HOH A 31 331 14 HOH HOH . I 7 HOH A 32 332 15 HOH HOH . I 7 HOH A 33 333 16 HOH HOH . I 7 HOH A 34 334 17 HOH HOH . I 7 HOH A 35 335 18 HOH HOH . I 7 HOH A 36 336 19 HOH HOH . I 7 HOH A 37 337 20 HOH HOH . I 7 HOH A 38 338 21 HOH HOH . I 7 HOH A 39 339 22 HOH HOH . I 7 HOH A 40 340 23 HOH HOH . I 7 HOH A 41 341 24 HOH HOH . I 7 HOH A 42 342 25 HOH HOH . I 7 HOH A 43 343 26 HOH HOH . I 7 HOH A 44 344 27 HOH HOH . I 7 HOH A 45 345 28 HOH HOH . I 7 HOH A 46 346 29 HOH HOH . I 7 HOH A 47 347 30 HOH HOH . I 7 HOH A 48 348 31 HOH HOH . I 7 HOH A 49 349 32 HOH HOH . I 7 HOH A 50 350 33 HOH HOH . I 7 HOH A 51 351 34 HOH HOH . I 7 HOH A 52 352 35 HOH HOH . I 7 HOH A 53 353 36 HOH HOH . I 7 HOH A 54 354 37 HOH HOH . I 7 HOH A 55 355 38 HOH HOH . I 7 HOH A 56 356 40 HOH HOH . I 7 HOH A 57 357 41 HOH HOH . I 7 HOH A 58 358 42 HOH HOH . I 7 HOH A 59 359 43 HOH HOH . I 7 HOH A 60 360 44 HOH HOH . I 7 HOH A 61 361 45 HOH HOH . I 7 HOH A 62 362 46 HOH HOH . I 7 HOH A 63 363 47 HOH HOH . I 7 HOH A 64 364 48 HOH HOH . I 7 HOH A 65 365 49 HOH HOH . I 7 HOH A 66 366 50 HOH HOH . I 7 HOH A 67 367 51 HOH HOH . I 7 HOH A 68 368 52 HOH HOH . I 7 HOH A 69 369 53 HOH HOH . I 7 HOH A 70 370 54 HOH HOH . I 7 HOH A 71 371 55 HOH HOH . I 7 HOH A 72 372 56 HOH HOH . I 7 HOH A 73 373 57 HOH HOH . I 7 HOH A 74 374 58 HOH HOH . I 7 HOH A 75 375 59 HOH HOH . I 7 HOH A 76 376 60 HOH HOH . I 7 HOH A 77 377 61 HOH HOH . I 7 HOH A 78 378 62 HOH HOH . I 7 HOH A 79 379 63 HOH HOH . I 7 HOH A 80 380 64 HOH HOH . I 7 HOH A 81 381 65 HOH HOH . I 7 HOH A 82 382 66 HOH HOH . I 7 HOH A 83 383 67 HOH HOH . I 7 HOH A 84 384 68 HOH HOH . I 7 HOH A 85 385 69 HOH HOH . I 7 HOH A 86 386 70 HOH HOH . I 7 HOH A 87 387 72 HOH HOH . I 7 HOH A 88 388 73 HOH HOH . I 7 HOH A 89 389 74 HOH HOH . I 7 HOH A 90 390 75 HOH HOH . I 7 HOH A 91 391 76 HOH HOH . I 7 HOH A 92 392 77 HOH HOH . I 7 HOH A 93 393 79 HOH HOH . I 7 HOH A 94 394 80 HOH HOH . I 7 HOH A 95 395 81 HOH HOH . I 7 HOH A 96 396 82 HOH HOH . I 7 HOH A 97 397 83 HOH HOH . I 7 HOH A 98 398 84 HOH HOH . I 7 HOH A 99 399 86 HOH HOH . I 7 HOH A 100 400 88 HOH HOH . I 7 HOH A 101 401 89 HOH HOH . I 7 HOH A 102 402 90 HOH HOH . I 7 HOH A 103 403 91 HOH HOH . I 7 HOH A 104 404 92 HOH HOH . I 7 HOH A 105 405 93 HOH HOH . I 7 HOH A 106 406 94 HOH HOH . I 7 HOH A 107 407 95 HOH HOH . I 7 HOH A 108 408 96 HOH HOH . I 7 HOH A 109 409 97 HOH HOH . I 7 HOH A 110 410 98 HOH HOH . I 7 HOH A 111 411 99 HOH HOH . I 7 HOH A 112 412 100 HOH HOH . I 7 HOH A 113 413 101 HOH HOH . I 7 HOH A 114 414 102 HOH HOH . I 7 HOH A 115 415 103 HOH HOH . I 7 HOH A 116 416 104 HOH HOH . I 7 HOH A 117 417 105 HOH HOH . I 7 HOH A 118 418 106 HOH HOH . I 7 HOH A 119 419 107 HOH HOH . I 7 HOH A 120 420 109 HOH HOH . I 7 HOH A 121 421 110 HOH HOH . I 7 HOH A 122 422 112 HOH HOH . I 7 HOH A 123 423 113 HOH HOH . I 7 HOH A 124 424 114 HOH HOH . I 7 HOH A 125 425 115 HOH HOH . I 7 HOH A 126 426 117 HOH HOH . I 7 HOH A 127 427 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . B 2 6.773 -4.868 2.309 1 49.54 ? OH2 1PE 201 A 1 HETATM 2 C C12 1PE . . . B 2 8.126 -5.281 2.479 1 48.3 ? C12 1PE 201 A 1 HETATM 3 C C22 1PE . . . B 2 8.947 -4.172 3.14 1 50.15 ? C22 1PE 201 A 1 HETATM 4 O OH3 1PE . . . B 2 9.02 -2.925 2.416 1 53 ? OH3 1PE 201 A 1 HETATM 5 C C13 1PE . . . B 2 9.819 -1.844 0.317 1 54.95 ? C13 1PE 201 A 1 HETATM 6 C C23 1PE . . . B 2 9.58 -3.141 1.103 1 53.96 ? C23 1PE 201 A 1 HETATM 7 O OH4 1PE . . . B 2 10.36 -2.194 -0.977 1 55.95 ? OH4 1PE 201 A 1 HETATM 8 C C14 1PE . . . B 2 9.887 -3.441 -3.073 1 55.22 ? C14 1PE 201 A 1 HETATM 9 C C24 1PE . . . B 2 9.366 -2.922 -1.734 1 56.38 ? C24 1PE 201 A 1 HETATM 10 O OH5 1PE . . . B 2 10.393 -2.427 -3.956 1 55.17 ? OH5 1PE 201 A 1 HETATM 11 C C15 1PE . . . B 2 11.507 -2.013 -6.077 1 52.43 ? C15 1PE 201 A 1 HETATM 12 C C25 1PE . . . B 2 10.844 -3.049 -5.179 1 54.03 ? C25 1PE 201 A 1 HETATM 13 O OH6 1PE . . . B 2 11.972 -2.59 -7.306 1 50.99 ? OH6 1PE 201 A 1 HETATM 14 C C16 1PE . . . B 2 11.808 -0.366 -8.392 1 50.95 ? C16 1PE 201 A 1 HETATM 15 C C26 1PE . . . B 2 12.678 -1.583 -8.064 1 50.51 ? C26 1PE 201 A 1 HETATM 16 O OH7 1PE . . . B 2 12.576 0.587 -9.138 1 50.84 ? OH7 1PE 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #