data_3T1D # _model_server_result.job_id pv3vjDzBtTQRVb1PTKBiKw _model_server_result.datetime_utc '2024-11-25 00:44:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":179}' # _entry.id 3T1D # _exptl.entry_id 3T1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T1D _cell.length_a 114.749 _cell.length_b 114.749 _cell.length_c 119.065 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,S 1 1 B,M,N,O,P,T 2 1 C,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 M N N ? 2 N N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 76 1_555 A SG CYS 195 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 B SG CYS 96 B CYS 76 1_555 B SG CYS 195 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 C SG CYS 96 C CYS 76 1_555 C SG CYS 195 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 3T1D _atom_sites.fract_transf_matrix[1][1] 0.008715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 179 1 GOL GOL . E 3 CL A 1 180 1 CL CL . F 3 CL A 1 181 1 CL CL . G 2 GOL A 1 182 1 GOL GOL . H 3 CL A 1 183 1 CL CL . I 2 GOL A 1 184 1 GOL GOL . J 2 GOL A 1 185 1 GOL GOL . K 4 TD1 A 1 186 1 TD1 TD1 . L 5 UNX A 1 187 5 UNX UNX . M 2 GOL B 1 179 1 GOL GOL . N 2 GOL B 1 180 1 GOL GOL . O 6 DBS B 1 181 1 DBS DBS . P 7 DBH B 1 182 1 DBH DBH . Q 6 DBS C 1 179 1 DBS DBS . R 2 GOL C 1 180 1 GOL GOL . S 8 HOH A 1 188 5 HOH HOH . S 8 HOH A 2 189 7 HOH HOH . S 8 HOH A 3 190 9 HOH HOH . S 8 HOH A 4 191 191 HOH HOH . S 8 HOH A 5 192 12 HOH HOH . S 8 HOH A 6 193 14 HOH HOH . S 8 HOH A 7 194 17 HOH HOH . S 8 HOH A 8 195 19 HOH HOH . S 8 HOH A 9 196 28 HOH HOH . S 8 HOH A 10 197 197 HOH HOH . S 8 HOH A 11 198 29 HOH HOH . S 8 HOH A 12 199 30 HOH HOH . S 8 HOH A 13 200 200 HOH HOH . S 8 HOH A 14 201 32 HOH HOH . S 8 HOH A 15 202 33 HOH HOH . S 8 HOH A 16 203 36 HOH HOH . S 8 HOH A 17 204 38 HOH HOH . S 8 HOH A 18 205 39 HOH HOH . S 8 HOH A 19 206 40 HOH HOH . S 8 HOH A 20 207 42 HOH HOH . S 8 HOH A 21 208 208 HOH HOH . S 8 HOH A 22 209 43 HOH HOH . S 8 HOH A 23 210 47 HOH HOH . S 8 HOH A 24 211 48 HOH HOH . S 8 HOH A 25 212 212 HOH HOH . S 8 HOH A 26 213 49 HOH HOH . S 8 HOH A 27 214 214 HOH HOH . S 8 HOH A 28 215 215 HOH HOH . S 8 HOH A 29 216 216 HOH HOH . S 8 HOH A 30 217 50 HOH HOH . S 8 HOH A 31 218 53 HOH HOH . S 8 HOH A 32 219 219 HOH HOH . S 8 HOH A 33 220 55 HOH HOH . S 8 HOH A 34 221 56 HOH HOH . S 8 HOH A 35 222 57 HOH HOH . S 8 HOH A 36 223 223 HOH HOH . S 8 HOH A 37 224 61 HOH HOH . S 8 HOH A 38 225 225 HOH HOH . S 8 HOH A 39 226 63 HOH HOH . S 8 HOH A 40 227 74 HOH HOH . S 8 HOH A 41 228 75 HOH HOH . S 8 HOH A 42 229 77 HOH HOH . S 8 HOH A 43 230 78 HOH HOH . S 8 HOH A 44 231 79 HOH HOH . S 8 HOH A 45 232 85 HOH HOH . S 8 HOH A 46 233 86 HOH HOH . S 8 HOH A 47 234 92 HOH HOH . S 8 HOH A 48 235 95 HOH HOH . S 8 HOH A 49 236 96 HOH HOH . S 8 HOH A 50 237 97 HOH HOH . S 8 HOH A 51 238 98 HOH HOH . S 8 HOH A 52 239 99 HOH HOH . S 8 HOH A 53 240 240 HOH HOH . S 8 HOH A 54 241 109 HOH HOH . S 8 HOH A 55 242 110 HOH HOH . S 8 HOH A 56 243 116 HOH HOH . S 8 HOH A 57 244 121 HOH HOH . S 8 HOH A 58 245 122 HOH HOH . S 8 HOH A 59 246 127 HOH HOH . S 8 HOH A 60 247 131 HOH HOH . S 8 HOH A 61 248 134 HOH HOH . S 8 HOH A 62 249 135 HOH HOH . S 8 HOH A 63 250 136 HOH HOH . S 8 HOH A 64 251 137 HOH HOH . S 8 HOH A 65 252 141 HOH HOH . S 8 HOH A 66 253 144 HOH HOH . S 8 HOH A 67 254 254 HOH HOH . S 8 HOH A 68 255 146 HOH HOH . S 8 HOH A 69 256 148 HOH HOH . S 8 HOH A 70 257 150 HOH HOH . S 8 HOH A 71 258 151 HOH HOH . S 8 HOH A 72 259 157 HOH HOH . S 8 HOH A 73 260 161 HOH HOH . S 8 HOH A 74 261 163 HOH HOH . S 8 HOH A 75 262 165 HOH HOH . S 8 HOH A 76 263 167 HOH HOH . S 8 HOH A 77 264 170 HOH HOH . S 8 HOH A 78 265 173 HOH HOH . S 8 HOH A 79 266 174 HOH HOH . S 8 HOH A 80 267 179 HOH HOH . S 8 HOH A 81 268 268 HOH HOH . S 8 HOH A 82 272 272 HOH HOH . S 8 HOH A 83 280 280 HOH HOH . S 8 HOH A 84 287 287 HOH HOH . S 8 HOH A 85 289 289 HOH HOH . S 8 HOH A 86 293 293 HOH HOH . S 8 HOH A 87 294 294 HOH HOH . S 8 HOH A 88 297 297 HOH HOH . S 8 HOH A 89 300 300 HOH HOH . S 8 HOH A 90 307 307 HOH HOH . S 8 HOH A 91 309 309 HOH HOH . S 8 HOH A 92 310 310 HOH HOH . S 8 HOH A 93 313 313 HOH HOH . S 8 HOH A 94 319 319 HOH HOH . S 8 HOH A 95 320 320 HOH HOH . S 8 HOH A 96 321 321 HOH HOH . S 8 HOH A 97 324 324 HOH HOH . S 8 HOH A 98 327 327 HOH HOH . S 8 HOH A 99 331 331 HOH HOH . S 8 HOH A 100 344 344 HOH HOH . S 8 HOH A 101 345 345 HOH HOH . S 8 HOH A 102 350 350 HOH HOH . S 8 HOH A 103 352 352 HOH HOH . S 8 HOH A 104 361 361 HOH HOH . S 8 HOH A 105 362 362 HOH HOH . S 8 HOH A 106 367 367 HOH HOH . S 8 HOH A 107 368 368 HOH HOH . S 8 HOH A 108 370 370 HOH HOH . S 8 HOH A 109 375 375 HOH HOH . S 8 HOH A 110 376 376 HOH HOH . S 8 HOH A 111 378 378 HOH HOH . S 8 HOH A 112 380 380 HOH HOH . S 8 HOH A 113 382 382 HOH HOH . S 8 HOH A 114 383 383 HOH HOH . T 8 HOH B 1 183 8 HOH HOH . T 8 HOH B 2 184 15 HOH HOH . T 8 HOH B 3 185 22 HOH HOH . T 8 HOH B 4 186 24 HOH HOH . T 8 HOH B 5 187 25 HOH HOH . T 8 HOH B 6 188 26 HOH HOH . T 8 HOH B 7 189 189 HOH HOH . T 8 HOH B 8 190 27 HOH HOH . T 8 HOH B 9 191 34 HOH HOH . T 8 HOH B 10 192 37 HOH HOH . T 8 HOH B 11 193 51 HOH HOH . T 8 HOH B 12 194 52 HOH HOH . T 8 HOH B 13 195 195 HOH HOH . T 8 HOH B 14 196 196 HOH HOH . T 8 HOH B 15 197 54 HOH HOH . T 8 HOH B 16 198 58 HOH HOH . T 8 HOH B 17 199 62 HOH HOH . T 8 HOH B 18 200 68 HOH HOH . T 8 HOH B 19 201 70 HOH HOH . T 8 HOH B 20 202 73 HOH HOH . T 8 HOH B 21 203 76 HOH HOH . T 8 HOH B 22 204 82 HOH HOH . T 8 HOH B 23 205 205 HOH HOH . T 8 HOH B 24 206 206 HOH HOH . T 8 HOH B 25 207 207 HOH HOH . T 8 HOH B 26 208 83 HOH HOH . T 8 HOH B 27 209 88 HOH HOH . T 8 HOH B 28 210 210 HOH HOH . T 8 HOH B 29 211 89 HOH HOH . T 8 HOH B 30 212 104 HOH HOH . T 8 HOH B 31 213 114 HOH HOH . T 8 HOH B 32 214 117 HOH HOH . T 8 HOH B 33 215 118 HOH HOH . T 8 HOH B 34 216 119 HOH HOH . T 8 HOH B 35 217 120 HOH HOH . T 8 HOH B 36 218 124 HOH HOH . T 8 HOH B 37 219 126 HOH HOH . T 8 HOH B 38 220 140 HOH HOH . T 8 HOH B 39 221 221 HOH HOH . T 8 HOH B 40 222 142 HOH HOH . T 8 HOH B 41 223 145 HOH HOH . T 8 HOH B 42 224 153 HOH HOH . T 8 HOH B 43 225 154 HOH HOH . T 8 HOH B 44 226 159 HOH HOH . T 8 HOH B 45 227 166 HOH HOH . T 8 HOH B 46 228 168 HOH HOH . T 8 HOH B 47 229 169 HOH HOH . T 8 HOH B 48 230 175 HOH HOH . T 8 HOH B 49 231 176 HOH HOH . T 8 HOH B 50 232 177 HOH HOH . T 8 HOH B 51 233 181 HOH HOH . T 8 HOH B 52 234 182 HOH HOH . T 8 HOH B 53 252 252 HOH HOH . T 8 HOH B 54 256 256 HOH HOH . T 8 HOH B 55 257 257 HOH HOH . T 8 HOH B 56 265 265 HOH HOH . T 8 HOH B 57 266 266 HOH HOH . T 8 HOH B 58 267 267 HOH HOH . T 8 HOH B 59 275 275 HOH HOH . T 8 HOH B 60 277 277 HOH HOH . T 8 HOH B 61 279 279 HOH HOH . T 8 HOH B 62 281 281 HOH HOH . T 8 HOH B 63 284 284 HOH HOH . T 8 HOH B 64 291 291 HOH HOH . T 8 HOH B 65 292 292 HOH HOH . T 8 HOH B 66 295 295 HOH HOH . T 8 HOH B 67 299 299 HOH HOH . T 8 HOH B 68 301 301 HOH HOH . T 8 HOH B 69 302 302 HOH HOH . T 8 HOH B 70 303 303 HOH HOH . T 8 HOH B 71 304 304 HOH HOH . T 8 HOH B 72 308 308 HOH HOH . T 8 HOH B 73 312 312 HOH HOH . T 8 HOH B 74 317 317 HOH HOH . T 8 HOH B 75 329 329 HOH HOH . T 8 HOH B 76 334 334 HOH HOH . T 8 HOH B 77 335 335 HOH HOH . T 8 HOH B 78 338 338 HOH HOH . T 8 HOH B 79 342 342 HOH HOH . T 8 HOH B 80 348 348 HOH HOH . T 8 HOH B 81 354 354 HOH HOH . T 8 HOH B 82 356 356 HOH HOH . T 8 HOH B 83 357 357 HOH HOH . T 8 HOH B 84 363 363 HOH HOH . T 8 HOH B 85 364 364 HOH HOH . T 8 HOH B 86 369 369 HOH HOH . T 8 HOH B 87 371 371 HOH HOH . T 8 HOH B 88 372 372 HOH HOH . T 8 HOH B 89 373 373 HOH HOH . T 8 HOH B 90 374 374 HOH HOH . T 8 HOH B 91 377 377 HOH HOH . T 8 HOH B 92 379 379 HOH HOH . T 8 HOH B 93 381 381 HOH HOH . T 8 HOH B 94 395 395 HOH HOH . T 8 HOH B 95 396 396 HOH HOH . T 8 HOH B 96 397 397 HOH HOH . U 8 HOH C 1 181 10 HOH HOH . U 8 HOH C 2 182 18 HOH HOH . U 8 HOH C 3 183 35 HOH HOH . U 8 HOH C 4 184 44 HOH HOH . U 8 HOH C 5 185 185 HOH HOH . U 8 HOH C 6 186 60 HOH HOH . U 8 HOH C 7 187 187 HOH HOH . U 8 HOH C 8 188 64 HOH HOH . U 8 HOH C 9 189 67 HOH HOH . U 8 HOH C 10 190 69 HOH HOH . U 8 HOH C 11 191 93 HOH HOH . U 8 HOH C 12 192 192 HOH HOH . U 8 HOH C 13 193 103 HOH HOH . U 8 HOH C 14 194 194 HOH HOH . U 8 HOH C 15 195 105 HOH HOH . U 8 HOH C 16 196 115 HOH HOH . U 8 HOH C 17 197 125 HOH HOH . U 8 HOH C 18 198 129 HOH HOH . U 8 HOH C 19 199 130 HOH HOH . U 8 HOH C 20 200 149 HOH HOH . U 8 HOH C 21 201 155 HOH HOH . U 8 HOH C 22 202 202 HOH HOH . U 8 HOH C 23 203 203 HOH HOH . U 8 HOH C 24 204 204 HOH HOH . U 8 HOH C 25 205 178 HOH HOH . U 8 HOH C 26 209 209 HOH HOH . U 8 HOH C 27 211 211 HOH HOH . U 8 HOH C 28 222 222 HOH HOH . U 8 HOH C 29 226 226 HOH HOH . U 8 HOH C 30 244 244 HOH HOH . U 8 HOH C 31 270 270 HOH HOH . U 8 HOH C 32 278 278 HOH HOH . U 8 HOH C 33 285 285 HOH HOH . U 8 HOH C 34 296 296 HOH HOH . U 8 HOH C 35 298 298 HOH HOH . U 8 HOH C 36 305 305 HOH HOH . U 8 HOH C 37 322 322 HOH HOH . U 8 HOH C 38 325 325 HOH HOH . U 8 HOH C 39 326 326 HOH HOH . U 8 HOH C 40 328 328 HOH HOH . U 8 HOH C 41 336 336 HOH HOH . U 8 HOH C 42 337 337 HOH HOH . U 8 HOH C 43 343 343 HOH HOH . U 8 HOH C 44 349 349 HOH HOH . U 8 HOH C 45 351 351 HOH HOH . U 8 HOH C 46 365 365 HOH HOH . U 8 HOH C 47 392 392 HOH HOH . U 8 HOH C 48 393 393 HOH HOH . U 8 HOH C 49 394 394 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 2 65.544 35.892 78.867 1 96.56 ? C1 GOL 179 B 1 HETATM 2 O O1 GOL . . . M 2 64.753 34.757 78.474 1 92.75 ? O1 GOL 179 B 1 HETATM 3 C C2 GOL . . . M 2 66.964 35.854 78.268 1 95.66 ? C2 GOL 179 B 1 HETATM 4 O O2 GOL . . . M 2 67.097 36.839 77.236 1 94.88 ? O2 GOL 179 B 1 HETATM 5 C C3 GOL . . . M 2 67.328 34.505 77.645 1 92.8 ? C3 GOL 179 B 1 HETATM 6 O O3 GOL . . . M 2 68.722 34.466 77.282 1 92.25 ? O3 GOL 179 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #