data_3T1Q # _model_server_result.job_id GSLCpo34Um6IjjEf5vQXpw _model_server_result.datetime_utc '2025-03-05 03:02:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":197}' # _entry.id 3T1Q # _exptl.entry_id 3T1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T1Q _cell.length_a 105.5 _cell.length_b 175.1 _cell.length_c 69.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 28 A THR 26 1_555 E MG MG . A MG 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A OG1 THR 56 A THR 54 1_555 E MG MG . A MG 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc3 D O3G GNP . A GNP 197 1_555 E MG MG . A MG 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc4 D O2B GNP . A GNP 197 1_555 E MG MG . A MG 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 E MG MG . A MG 198 1_555 F O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 E MG MG . A MG 198 1_555 F O HOH . A HOH 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 116 n n PG O2G GNP sing 117 n n PG O3G GNP sing 118 n n PG N3B GNP sing 119 n n O2G HOG2 GNP sing 120 n n O3G HOG3 GNP sing 121 n n N3B PB GNP sing 122 n n N3B HNB3 GNP sing 123 n n PB O1B GNP doub 124 n n PB O2B GNP sing 125 n n PB O3A GNP sing 126 n n O2B HOB2 GNP sing 127 n n O3A PA GNP sing 128 n n PA O1A GNP doub 129 n n PA O2A GNP sing 130 n n PA O5' GNP sing 131 n n O2A HOA2 GNP sing 132 n n O5' C5' GNP sing 133 n n C5' C4' GNP sing 134 n n C5' "H5'2" GNP sing 135 n n C5' "H5'1" GNP sing 136 n n C4' O4' GNP sing 137 n n C4' C3' GNP sing 138 n n C4' H4' GNP sing 139 n n O4' C1' GNP sing 140 n n C3' O3' GNP sing 141 n n C3' C2' GNP sing 142 n n C3' H3' GNP sing 143 n n O3' HO3' GNP sing 144 n n C2' O2' GNP sing 145 n n C2' C1' GNP sing 146 n n C2' H2' GNP sing 147 n n O2' HO2' GNP sing 148 n n C1' N9 GNP sing 149 n n C1' H1' GNP sing 150 n n N9 C8 GNP sing 151 n y N9 C4 GNP sing 152 n y C8 N7 GNP doub 153 n y C8 H8 GNP sing 154 n n N7 C5 GNP sing 155 n y C5 C6 GNP sing 156 n y C5 C4 GNP doub 157 n y C6 O6 GNP doub 158 n n C6 N1 GNP sing 159 n y N1 C2 GNP sing 160 n y N1 HN1 GNP sing 161 n n C2 N2 GNP sing 162 n n C2 N3 GNP doub 163 n y N2 HN21 GNP sing 164 n n N2 HN22 GNP sing 165 n n N3 C4 GNP sing 166 n y # _atom_sites.entry_id 3T1Q _atom_sites.fract_transf_matrix[1][1] 0.009479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GNP A 1 197 1 GNP GNP . E 4 MG A 1 198 1 MG MG . F 5 HOH A 1 199 1 HOH HOH . F 5 HOH A 2 200 2 HOH HOH . F 5 HOH A 3 201 3 HOH HOH . F 5 HOH A 4 202 6 HOH HOH . F 5 HOH A 5 203 11 HOH HOH . F 5 HOH A 6 204 14 HOH HOH . F 5 HOH A 7 205 26 HOH HOH . F 5 HOH A 8 206 37 HOH HOH . F 5 HOH A 9 207 42 HOH HOH . F 5 HOH A 10 208 48 HOH HOH . F 5 HOH A 11 209 75 HOH HOH . F 5 HOH A 12 210 86 HOH HOH . F 5 HOH A 13 211 89 HOH HOH . F 5 HOH A 14 242 242 HOH HOH . F 5 HOH A 15 247 247 HOH HOH . F 5 HOH A 16 248 248 HOH HOH . F 5 HOH A 17 253 253 HOH HOH . F 5 HOH A 18 254 254 HOH HOH . F 5 HOH A 19 255 255 HOH HOH . F 5 HOH A 20 257 257 HOH HOH . F 5 HOH A 21 258 258 HOH HOH . F 5 HOH A 22 261 261 HOH HOH . G 5 HOH B 1 140 8 HOH HOH . G 5 HOH B 2 141 9 HOH HOH . G 5 HOH B 3 142 21 HOH HOH . G 5 HOH B 4 143 23 HOH HOH . G 5 HOH B 5 144 32 HOH HOH . G 5 HOH B 6 145 36 HOH HOH . G 5 HOH B 7 146 40 HOH HOH . G 5 HOH B 8 147 47 HOH HOH . G 5 HOH B 9 148 71 HOH HOH . G 5 HOH B 10 149 73 HOH HOH . G 5 HOH B 11 150 101 HOH HOH . G 5 HOH B 12 151 118 HOH HOH . G 5 HOH B 13 259 259 HOH HOH . G 5 HOH B 14 260 260 HOH HOH . H 5 HOH C 1 140 10 HOH HOH . H 5 HOH C 2 141 18 HOH HOH . H 5 HOH C 3 142 24 HOH HOH . H 5 HOH C 4 143 29 HOH HOH . H 5 HOH C 5 144 57 HOH HOH . H 5 HOH C 6 145 84 HOH HOH . H 5 HOH C 7 146 105 HOH HOH . H 5 HOH C 8 147 117 HOH HOH . H 5 HOH C 9 148 122 HOH HOH . H 5 HOH C 10 249 249 HOH HOH . H 5 HOH C 11 251 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . D 3 33.647 16.975 -2.275 1 29.81 ? PG GNP 197 A 1 HETATM 2 O O1G GNP . . . D 3 32.344 16.6 -2.871 1 29.13 ? O1G GNP 197 A 1 HETATM 3 O O2G GNP . . . D 3 34.214 15.767 -1.411 1 27.96 ? O2G GNP 197 A 1 HETATM 4 O O3G GNP . . . D 3 33.528 18.204 -1.221 1 31.05 ? O3G GNP 197 A 1 HETATM 5 N N3B GNP . . . D 3 34.853 17.374 -3.311 1 29.32 ? N3B GNP 197 A 1 HETATM 6 P PB GNP . . . D 3 34.822 18.841 -4.118 1 29.09 ? PB GNP 197 A 1 HETATM 7 O O1B GNP . . . D 3 34.135 18.666 -5.415 1 30.96 ? O1B GNP 197 A 1 HETATM 8 O O2B GNP . . . D 3 34.397 19.973 -3.26 1 24.73 ? O2B GNP 197 A 1 HETATM 9 O O3A GNP . . . D 3 36.448 18.919 -4.519 1 28.24 ? O3A GNP 197 A 1 HETATM 10 P PA GNP . . . D 3 37.453 20.07 -3.875 1 28.88 ? PA GNP 197 A 1 HETATM 11 O O1A GNP . . . D 3 37.788 19.92 -2.426 1 26.4 ? O1A GNP 197 A 1 HETATM 12 O O2A GNP . . . D 3 36.876 21.333 -4.352 1 29.27 ? O2A GNP 197 A 1 HETATM 13 O O5' GNP . . . D 3 38.798 19.77 -4.661 1 30.85 ? O5' GNP 197 A 1 HETATM 14 C C5' GNP . . . D 3 39.349 18.469 -4.53 1 31.88 ? C5' GNP 197 A 1 HETATM 15 C C4' GNP . . . D 3 40.83 18.475 -4.87 1 36.48 ? C4' GNP 197 A 1 HETATM 16 O O4' GNP . . . D 3 40.939 18.711 -6.296 1 37.81 ? O4' GNP 197 A 1 HETATM 17 C C3' GNP . . . D 3 41.728 19.571 -4.218 1 38.22 ? C3' GNP 197 A 1 HETATM 18 O O3' GNP . . . D 3 43.054 19.023 -4.214 1 37.57 ? O3' GNP 197 A 1 HETATM 19 C C2' GNP . . . D 3 41.663 20.659 -5.26 1 38.15 ? C2' GNP 197 A 1 HETATM 20 O O2' GNP . . . D 3 42.764 21.53 -5.177 1 41.5 ? O2' GNP 197 A 1 HETATM 21 C C1' GNP . . . D 3 41.911 19.805 -6.473 1 38.42 ? C1' GNP 197 A 1 HETATM 22 N N9 GNP . . . D 3 41.499 20.474 -7.678 1 39.06 ? N9 GNP 197 A 1 HETATM 23 C C8 GNP . . . D 3 40.356 21.16 -7.8 1 40.36 ? C8 GNP 197 A 1 HETATM 24 N N7 GNP . . . D 3 40.249 21.623 -9.039 1 39.74 ? N7 GNP 197 A 1 HETATM 25 C C5 GNP . . . D 3 41.325 21.214 -9.723 1 38.63 ? C5 GNP 197 A 1 HETATM 26 C C6 GNP . . . D 3 41.707 21.41 -11.042 1 36.74 ? C6 GNP 197 A 1 HETATM 27 O O6 GNP . . . D 3 40.987 22.052 -11.821 1 33.31 ? O6 GNP 197 A 1 HETATM 28 N N1 GNP . . . D 3 42.91 20.828 -11.459 1 37.48 ? N1 GNP 197 A 1 HETATM 29 C C2 GNP . . . D 3 43.692 20.078 -10.577 1 39.37 ? C2 GNP 197 A 1 HETATM 30 N N2 GNP . . . D 3 44.839 19.552 -11.027 1 39.21 ? N2 GNP 197 A 1 HETATM 31 N N3 GNP . . . D 3 43.29 19.905 -9.286 1 40.25 ? N3 GNP 197 A 1 HETATM 32 C C4 GNP . . . D 3 42.131 20.467 -8.854 1 39.77 ? C4 GNP 197 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #