data_3T29 # _model_server_result.job_id HWFsIL6dnvuPvD1cJsZ5iA _model_server_result.datetime_utc '2024-11-05 13:55:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":268}' # _entry.id 3T29 # _exptl.entry_id 3T29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.11 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trimethylamine oxide' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3T29 _cell.length_a 54.37 _cell.length_b 54.37 _cell.length_c 105.355 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 B CA CA . A CA 246 1_555 K O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc6 B CA CA . A CA 246 1_555 K O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? # _chem_comp.formula 'C3 H9 N O' _chem_comp.formula_weight 75.11 _chem_comp.id TMO _chem_comp.mon_nstd_flag . _chem_comp.name 'trimethylamine oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAC TMO sing 323 n n CAA HAA TMO sing 324 n n CAA HAAA TMO sing 325 n n CAA HAAB TMO sing 326 n n NAC CAD TMO sing 327 n n NAC CAB TMO sing 328 n n NAC OAE TMO sing 329 n n CAD HAD TMO sing 330 n n CAD HADA TMO sing 331 n n CAD HADB TMO sing 332 n n CAB HAB TMO sing 333 n n CAB HABA TMO sing 334 n n CAB HABB TMO sing 335 n n # _atom_sites.entry_id 3T29 _atom_sites.fract_transf_matrix[1][1] 0.018392 _atom_sites.fract_transf_matrix[1][2] 0.010619 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 246 246 CA CA . C 3 BEN A 1 250 250 BEN BDN . D 4 TMO A 1 261 261 TMO TMO . E 4 TMO A 1 262 262 TMO TMO . F 4 TMO A 1 263 263 TMO TMO . G 4 TMO A 1 264 264 TMO TMO . H 4 TMO A 1 265 265 TMO TMO . I 4 TMO A 1 267 267 TMO TMO . J 4 TMO A 1 268 268 TMO TMO . K 5 HOH A 1 300 300 HOH HOH . K 5 HOH A 2 301 301 HOH HOH . K 5 HOH A 3 302 302 HOH HOH . K 5 HOH A 4 303 303 HOH HOH . K 5 HOH A 5 304 304 HOH HOH . K 5 HOH A 6 305 305 HOH HOH . K 5 HOH A 7 306 306 HOH HOH . K 5 HOH A 8 307 307 HOH HOH . K 5 HOH A 9 308 308 HOH HOH . K 5 HOH A 10 309 309 HOH HOH . K 5 HOH A 11 310 310 HOH HOH . K 5 HOH A 12 311 311 HOH HOH . K 5 HOH A 13 312 312 HOH HOH . K 5 HOH A 14 313 313 HOH HOH . K 5 HOH A 15 314 314 HOH HOH . K 5 HOH A 16 315 315 HOH HOH . K 5 HOH A 17 316 316 HOH HOH . K 5 HOH A 18 317 317 HOH HOH . K 5 HOH A 19 318 318 HOH HOH . K 5 HOH A 20 319 319 HOH HOH . K 5 HOH A 21 320 320 HOH HOH . K 5 HOH A 22 321 321 HOH HOH . K 5 HOH A 23 322 322 HOH HOH . K 5 HOH A 24 323 323 HOH HOH . K 5 HOH A 25 324 324 HOH HOH . K 5 HOH A 26 325 325 HOH HOH . K 5 HOH A 27 326 326 HOH HOH . K 5 HOH A 28 327 327 HOH HOH . K 5 HOH A 29 328 328 HOH HOH . K 5 HOH A 30 329 329 HOH HOH . K 5 HOH A 31 330 330 HOH HOH . K 5 HOH A 32 331 331 HOH HOH . K 5 HOH A 33 332 332 HOH HOH . K 5 HOH A 34 333 333 HOH HOH . K 5 HOH A 35 334 334 HOH HOH . K 5 HOH A 36 335 335 HOH HOH . K 5 HOH A 37 336 336 HOH HOH . K 5 HOH A 38 337 337 HOH HOH . K 5 HOH A 39 338 338 HOH HOH . K 5 HOH A 40 339 339 HOH HOH . K 5 HOH A 41 340 340 HOH HOH . K 5 HOH A 42 341 341 HOH HOH . K 5 HOH A 43 342 342 HOH HOH . K 5 HOH A 44 343 343 HOH HOH . K 5 HOH A 45 344 344 HOH HOH . K 5 HOH A 46 345 345 HOH HOH . K 5 HOH A 47 346 346 HOH HOH . K 5 HOH A 48 347 347 HOH HOH . K 5 HOH A 49 348 348 HOH HOH . K 5 HOH A 50 349 349 HOH HOH . K 5 HOH A 51 350 350 HOH HOH . K 5 HOH A 52 351 351 HOH HOH . K 5 HOH A 53 352 352 HOH HOH . K 5 HOH A 54 353 353 HOH HOH . K 5 HOH A 55 354 354 HOH HOH . K 5 HOH A 56 355 355 HOH HOH . K 5 HOH A 57 356 356 HOH HOH . K 5 HOH A 58 357 357 HOH HOH . K 5 HOH A 59 358 358 HOH HOH . K 5 HOH A 60 359 359 HOH HOH . K 5 HOH A 61 360 360 HOH HOH . K 5 HOH A 62 361 361 HOH HOH . K 5 HOH A 63 362 362 HOH HOH . K 5 HOH A 64 363 363 HOH HOH . K 5 HOH A 65 364 364 HOH HOH . K 5 HOH A 66 365 365 HOH HOH . K 5 HOH A 67 366 366 HOH HOH . K 5 HOH A 68 367 367 HOH HOH . K 5 HOH A 69 368 368 HOH HOH . K 5 HOH A 70 369 369 HOH HOH . K 5 HOH A 71 370 370 HOH HOH . K 5 HOH A 72 371 371 HOH HOH . K 5 HOH A 73 372 372 HOH HOH . K 5 HOH A 74 373 373 HOH HOH . K 5 HOH A 75 374 374 HOH HOH . K 5 HOH A 76 375 375 HOH HOH . K 5 HOH A 77 376 376 HOH HOH . K 5 HOH A 78 377 377 HOH HOH . K 5 HOH A 79 378 378 HOH HOH . K 5 HOH A 80 379 379 HOH HOH . K 5 HOH A 81 380 380 HOH HOH . K 5 HOH A 82 381 381 HOH HOH . K 5 HOH A 83 382 382 HOH HOH . K 5 HOH A 84 383 383 HOH HOH . K 5 HOH A 85 384 384 HOH HOH . K 5 HOH A 86 385 385 HOH HOH . K 5 HOH A 87 386 386 HOH HOH . K 5 HOH A 88 387 387 HOH HOH . K 5 HOH A 89 388 388 HOH HOH . K 5 HOH A 90 389 389 HOH HOH . K 5 HOH A 91 390 390 HOH HOH . K 5 HOH A 92 391 391 HOH HOH . K 5 HOH A 93 392 392 HOH HOH . K 5 HOH A 94 393 393 HOH HOH . K 5 HOH A 95 394 394 HOH HOH . K 5 HOH A 96 395 395 HOH HOH . K 5 HOH A 97 396 396 HOH HOH . K 5 HOH A 98 397 397 HOH HOH . K 5 HOH A 99 398 398 HOH HOH . K 5 HOH A 100 399 399 HOH HOH . K 5 HOH A 101 400 400 HOH HOH . K 5 HOH A 102 401 401 HOH HOH . K 5 HOH A 103 402 402 HOH HOH . K 5 HOH A 104 403 403 HOH HOH . K 5 HOH A 105 404 404 HOH HOH . K 5 HOH A 106 405 405 HOH HOH . K 5 HOH A 107 406 406 HOH HOH . K 5 HOH A 108 407 407 HOH HOH . K 5 HOH A 109 408 408 HOH HOH . K 5 HOH A 110 409 409 HOH HOH . K 5 HOH A 111 410 410 HOH HOH . K 5 HOH A 112 411 411 HOH HOH . K 5 HOH A 113 412 412 HOH HOH . K 5 HOH A 114 413 413 HOH HOH . K 5 HOH A 115 414 414 HOH HOH . K 5 HOH A 116 415 415 HOH HOH . K 5 HOH A 117 416 416 HOH HOH . K 5 HOH A 118 417 417 HOH HOH . K 5 HOH A 119 418 418 HOH HOH . K 5 HOH A 120 419 419 HOH HOH . K 5 HOH A 121 420 420 HOH HOH . K 5 HOH A 122 421 421 HOH HOH . K 5 HOH A 123 422 422 HOH HOH . K 5 HOH A 124 423 423 HOH HOH . K 5 HOH A 125 424 424 HOH HOH . K 5 HOH A 126 425 425 HOH HOH . K 5 HOH A 127 426 426 HOH HOH . K 5 HOH A 128 427 427 HOH HOH . K 5 HOH A 129 428 428 HOH HOH . K 5 HOH A 130 429 429 HOH HOH . K 5 HOH A 131 430 430 HOH HOH . K 5 HOH A 132 431 431 HOH HOH . K 5 HOH A 133 432 432 HOH HOH . K 5 HOH A 134 433 433 HOH HOH . K 5 HOH A 135 434 434 HOH HOH . K 5 HOH A 136 435 435 HOH HOH . K 5 HOH A 137 436 436 HOH HOH . K 5 HOH A 138 437 437 HOH HOH . K 5 HOH A 139 438 438 HOH HOH . K 5 HOH A 140 439 439 HOH HOH . K 5 HOH A 141 440 440 HOH HOH . K 5 HOH A 142 441 441 HOH HOH . K 5 HOH A 143 442 442 HOH HOH . K 5 HOH A 144 443 443 HOH HOH . K 5 HOH A 145 444 444 HOH HOH . K 5 HOH A 146 445 445 HOH HOH . K 5 HOH A 147 446 446 HOH HOH . K 5 HOH A 148 447 447 HOH HOH . K 5 HOH A 149 448 448 HOH HOH . K 5 HOH A 150 449 449 HOH HOH . K 5 HOH A 151 450 450 HOH HOH . K 5 HOH A 152 451 451 HOH HOH . K 5 HOH A 153 452 452 HOH HOH . K 5 HOH A 154 453 453 HOH HOH . K 5 HOH A 155 454 454 HOH HOH . K 5 HOH A 156 455 455 HOH HOH . K 5 HOH A 157 456 456 HOH HOH . K 5 HOH A 158 457 457 HOH HOH . K 5 HOH A 159 458 458 HOH HOH . K 5 HOH A 160 459 459 HOH HOH . K 5 HOH A 161 460 460 HOH HOH . K 5 HOH A 162 461 461 HOH HOH . K 5 HOH A 163 462 462 HOH HOH . K 5 HOH A 164 463 463 HOH HOH . K 5 HOH A 165 464 464 HOH HOH . K 5 HOH A 166 465 465 HOH HOH . K 5 HOH A 167 466 466 HOH HOH . K 5 HOH A 168 467 467 HOH HOH . K 5 HOH A 169 468 468 HOH HOH . K 5 HOH A 170 469 469 HOH HOH . K 5 HOH A 171 470 470 HOH HOH . K 5 HOH A 172 471 471 HOH HOH . K 5 HOH A 173 472 472 HOH HOH . K 5 HOH A 174 473 473 HOH HOH . K 5 HOH A 175 474 474 HOH HOH . K 5 HOH A 176 475 475 HOH HOH . K 5 HOH A 177 476 476 HOH HOH . K 5 HOH A 178 477 477 HOH HOH . K 5 HOH A 179 478 478 HOH HOH . K 5 HOH A 180 479 479 HOH HOH . K 5 HOH A 181 480 480 HOH HOH . K 5 HOH A 182 481 481 HOH HOH . K 5 HOH A 183 482 482 HOH HOH . K 5 HOH A 184 483 483 HOH HOH . K 5 HOH A 185 484 484 HOH HOH . K 5 HOH A 186 485 485 HOH HOH . K 5 HOH A 187 486 486 HOH HOH . K 5 HOH A 188 487 487 HOH HOH . K 5 HOH A 189 488 488 HOH HOH . K 5 HOH A 190 489 489 HOH HOH . K 5 HOH A 191 490 490 HOH HOH . K 5 HOH A 192 491 491 HOH HOH . K 5 HOH A 193 492 492 HOH HOH . K 5 HOH A 194 493 493 HOH HOH . K 5 HOH A 195 494 494 HOH HOH . K 5 HOH A 196 495 495 HOH HOH . K 5 HOH A 197 496 496 HOH HOH . K 5 HOH A 198 497 497 HOH HOH . K 5 HOH A 199 498 498 HOH HOH . K 5 HOH A 200 499 499 HOH HOH . K 5 HOH A 201 500 500 HOH HOH . K 5 HOH A 202 501 501 HOH HOH . K 5 HOH A 203 502 502 HOH HOH . K 5 HOH A 204 503 503 HOH HOH . K 5 HOH A 205 504 504 HOH HOH . K 5 HOH A 206 505 505 HOH HOH . K 5 HOH A 207 506 506 HOH HOH . K 5 HOH A 208 507 507 HOH HOH . K 5 HOH A 209 508 508 HOH HOH . K 5 HOH A 210 509 509 HOH HOH . K 5 HOH A 211 510 510 HOH HOH . K 5 HOH A 212 511 511 HOH HOH . K 5 HOH A 213 512 512 HOH HOH . K 5 HOH A 214 513 513 HOH HOH . K 5 HOH A 215 514 514 HOH HOH . K 5 HOH A 216 515 515 HOH HOH . K 5 HOH A 217 516 516 HOH HOH . K 5 HOH A 218 517 517 HOH HOH . K 5 HOH A 219 518 518 HOH HOH . K 5 HOH A 220 519 519 HOH HOH . K 5 HOH A 221 520 520 HOH HOH . K 5 HOH A 222 521 521 HOH HOH . K 5 HOH A 223 522 522 HOH HOH . K 5 HOH A 224 523 523 HOH HOH . K 5 HOH A 225 524 524 HOH HOH . K 5 HOH A 226 525 525 HOH HOH . K 5 HOH A 227 526 526 HOH HOH . K 5 HOH A 228 527 527 HOH HOH . K 5 HOH A 229 528 528 HOH HOH . K 5 HOH A 230 529 529 HOH HOH . K 5 HOH A 231 530 530 HOH HOH . K 5 HOH A 232 531 531 HOH HOH . K 5 HOH A 233 532 532 HOH HOH . K 5 HOH A 234 533 533 HOH HOH . K 5 HOH A 235 534 534 HOH HOH . K 5 HOH A 236 535 535 HOH HOH . K 5 HOH A 237 536 536 HOH HOH . K 5 HOH A 238 537 537 HOH HOH . K 5 HOH A 239 538 538 HOH HOH . K 5 HOH A 240 539 539 HOH HOH . K 5 HOH A 241 540 540 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA TMO . . . J 4 41.603 28.535 42.737 1 29.84 ? CAA TMO 268 A 1 HETATM 2 N NAC TMO . . . J 4 42.06 27.96 41.462 1 29.14 ? NAC TMO 268 A 1 HETATM 3 C CAD TMO . . . J 4 43.008 26.867 41.749 1 29.05 ? CAD TMO 268 A 1 HETATM 4 C CAB TMO . . . J 4 40.904 27.464 40.706 1 27.51 ? CAB TMO 268 A 1 HETATM 5 O OAE TMO . . . J 4 42.709 29.004 40.662 1 26.96 ? OAE TMO 268 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #