data_3T2A # _model_server_result.job_id -uFbZKwUQQKFtDkMpj_8fA _model_server_result.datetime_utc '2024-11-08 13:46:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":31}' # _entry.id 3T2A # _exptl.entry_id 3T2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trimethylamine oxide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T2A _cell.length_a 79.098 _cell.length_b 79.098 _cell.length_c 79.098 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 79.098 39.549 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C3 H9 N O' _chem_comp.formula_weight 75.11 _chem_comp.id TMO _chem_comp.mon_nstd_flag . _chem_comp.name 'trimethylamine oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAC TMO sing 272 n n CAA HAA TMO sing 273 n n CAA HAAA TMO sing 274 n n CAA HAAB TMO sing 275 n n NAC CAD TMO sing 276 n n NAC CAB TMO sing 277 n n NAC OAE TMO sing 278 n n CAD HAD TMO sing 279 n n CAD HADA TMO sing 280 n n CAD HADB TMO sing 281 n n CAB HAB TMO sing 282 n n CAB HABA TMO sing 283 n n CAB HABB TMO sing 284 n n # _atom_sites.entry_id 3T2A _atom_sites.fract_transf_matrix[1][1] 0.012643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TMO B 1 31 1 TMO TMO . D 4 HOH A 1 22 22 HOH HOH . D 4 HOH A 2 23 23 HOH HOH . D 4 HOH A 3 24 24 HOH HOH . D 4 HOH A 4 25 4 HOH HOH . D 4 HOH A 5 26 9 HOH HOH . D 4 HOH A 6 27 10 HOH HOH . D 4 HOH A 7 29 29 HOH HOH . D 4 HOH A 8 30 30 HOH HOH . D 4 HOH A 9 31 31 HOH HOH . D 4 HOH A 10 41 41 HOH HOH . D 4 HOH A 11 54 54 HOH HOH . D 4 HOH A 12 62 62 HOH HOH . E 4 HOH B 1 32 32 HOH HOH . E 4 HOH B 2 33 33 HOH HOH . E 4 HOH B 3 34 34 HOH HOH . E 4 HOH B 4 35 35 HOH HOH . E 4 HOH B 5 36 36 HOH HOH . E 4 HOH B 6 37 37 HOH HOH . E 4 HOH B 7 38 38 HOH HOH . E 4 HOH B 8 39 39 HOH HOH . E 4 HOH B 9 40 31 HOH HOH . E 4 HOH B 10 41 1 HOH HOH . E 4 HOH B 11 42 2 HOH HOH . E 4 HOH B 12 43 43 HOH HOH . E 4 HOH B 13 44 3 HOH HOH . E 4 HOH B 14 45 45 HOH HOH . E 4 HOH B 15 46 46 HOH HOH . E 4 HOH B 16 47 5 HOH HOH . E 4 HOH B 17 48 48 HOH HOH . E 4 HOH B 18 49 6 HOH HOH . E 4 HOH B 19 50 50 HOH HOH . E 4 HOH B 20 51 7 HOH HOH . E 4 HOH B 21 52 8 HOH HOH . E 4 HOH B 22 57 57 HOH HOH . E 4 HOH B 23 63 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA TMO . . . C 3 25.94 27.344 27.684 0.33 58.85 ? CAA TMO 31 B 1 HETATM 2 N NAC TMO . . . C 3 26.759 26.681 26.652 0.33 59.59 ? NAC TMO 31 B 1 HETATM 3 C CAD TMO . . . C 3 27.533 27.698 25.919 0.33 58.78 ? CAD TMO 31 B 1 HETATM 4 C CAB TMO . . . C 3 27.681 25.73 27.296 0.33 58.72 ? CAB TMO 31 B 1 HETATM 5 O OAE TMO . . . C 3 25.882 25.953 25.701 0.33 59.16 ? OAE TMO 31 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #