data_3T2G # _model_server_result.job_id s9D-5svgg2kjArxf2mCLDw _model_server_result.datetime_utc '2024-11-06 01:57:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":410}' # _entry.id 3T2G # _exptl.entry_id 3T2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.058 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-DIHYDROXYACETONEPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T2G _cell.length_a 112.43 _cell.length_b 112.43 _cell.length_c 151.52 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -112.43 112.43 0 3 'crystal symmetry operation' 3_565 -y,x+1,z 0 -1 0 1 0 0 0 0 1 0 112.43 0 4 'crystal symmetry operation' 4_455 y-1,-x,z 0 1 0 -1 0 0 0 0 1 -112.43 0 0 5 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -112.43 0 0 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 112.43 0 7 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -112.43 112.43 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 11 A ASP 11 1_555 C MG MG . A MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A OD1 ASP 52 A ASP 52 1_555 B MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A OD2 ASP 52 A ASP 52 1_555 C MG MG . A MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 A OD2 ASP 53 A ASP 53 1_555 B MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc5 A OD1 ASP 53 A ASP 53 1_555 B MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc6 A OE1 GLN 95 A GLN 95 1_555 C MG MG . A MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc7 A OD1 ASP 132 A ASP 132 1_555 B MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc8 A OD2 ASP 234 A ASP 234 1_555 B MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc9 B MG MG . A MG 408 1_555 D O2P 13P . A 13P 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc10 C MG MG . A MG 409 1_555 D O3P 13P . A 13P 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? # _chem_comp.formula 'C3 H7 O6 P' _chem_comp.formula_weight 170.058 _chem_comp.id 13P _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-DIHYDROXYACETONEPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 13P doub 1 n n P O2P 13P sing 2 n n P O3P 13P sing 3 n n P O1 13P sing 4 n n O2P HOP2 13P sing 5 n n O3P HOP3 13P sing 6 n n O1 C1 13P sing 7 n n C1 C2 13P sing 8 n n C1 H11 13P sing 9 n n C1 H12 13P sing 10 n n C2 O2 13P doub 11 n n C2 C3 13P sing 12 n n C3 O3 13P sing 13 n n C3 H31 13P sing 14 n n C3 H32 13P sing 15 n n O3 HO3 13P sing 16 n n # _atom_sites.entry_id 3T2G _atom_sites.fract_transf_matrix[1][1] 0.008894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 408 401 MG MG . C 2 MG A 1 409 402 MG MG . D 3 13P A 1 410 1 13P 13P . E 3 13P A 1 411 2 13P 13P . F 4 HOH A 1 412 1 HOH HOH . F 4 HOH A 2 413 2 HOH HOH . F 4 HOH A 3 414 3 HOH HOH . F 4 HOH A 4 415 4 HOH HOH . F 4 HOH A 5 416 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 13P . . . D 3 -60.462 28.773 19.208 1 74.74 ? P 13P 410 A 1 HETATM 2 O O1P 13P . . . D 3 -59.515 27.892 18.419 1 74.91 ? O1P 13P 410 A 1 HETATM 3 O O2P 13P . . . D 3 -59.89 30.145 19.482 1 74.92 ? O2P 13P 410 A 1 HETATM 4 O O3P 13P . . . D 3 -61.143 28.135 20.408 1 72.46 ? O3P 13P 410 A 1 HETATM 5 O O1 13P . . . D 3 -61.642 29.054 18.137 1 73.46 ? O1 13P 410 A 1 HETATM 6 C C1 13P . . . D 3 -62.494 27.988 17.694 1 70.49 ? C1 13P 410 A 1 HETATM 7 C C2 13P . . . D 3 -63.294 28.417 16.496 1 67.13 ? C2 13P 410 A 1 HETATM 8 O O2 13P . . . D 3 -63.239 27.764 15.477 0.4 66.97 ? O2 13P 410 A 1 HETATM 9 C C3 13P . . . D 3 -64.146 29.653 16.604 1 65.93 ? C3 13P 410 A 1 HETATM 10 O O3 13P . . . D 3 -64.652 30.053 15.331 1 64.7 ? O3 13P 410 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #