data_3T2Y # _model_server_result.job_id FeShP-A1RrHb37HMRH-o7A _model_server_result.datetime_utc '2025-03-09 00:29:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3T2Y # _exptl.entry_id 3T2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3T2Y _cell.length_a 150.07 _cell.length_b 150.07 _cell.length_c 81.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 160 A CYS 160 1_555 D S H2S . A H2S 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.098 ? covale ? covale2 A SG CYS 160 A CYS 160 1_555 D S H2S . A H2S 504 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.099 ? covale ? covale3 A SG CYS 356 A CYS 356 1_555 E S1 S2H . A S2H 505 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.123 ? covale ? covale4 A SG CYS 356 A CYS 356 1_555 E S1 S2H . A S2H 505 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3T2Y _atom_sites.fract_transf_matrix[1][1] 0.006664 _atom_sites.fract_transf_matrix[1][2] 0.003847 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 LMT A 1 501 501 LMT LMT . D 4 H2S A 1 504 504 H2S H2S . E 5 S2H A 1 505 505 S2H S2H . F 6 HOH A 1 506 506 HOH HOH . F 6 HOH A 2 507 507 HOH HOH . F 6 HOH A 3 508 508 HOH HOH . F 6 HOH A 4 509 509 HOH HOH . F 6 HOH A 5 510 510 HOH HOH . F 6 HOH A 6 511 511 HOH HOH . F 6 HOH A 7 512 512 HOH HOH . F 6 HOH A 8 513 513 HOH HOH . F 6 HOH A 9 514 514 HOH HOH . F 6 HOH A 10 515 515 HOH HOH . F 6 HOH A 11 516 516 HOH HOH . F 6 HOH A 12 517 517 HOH HOH . F 6 HOH A 13 518 518 HOH HOH . F 6 HOH A 14 520 520 HOH HOH . F 6 HOH A 15 521 521 HOH HOH . F 6 HOH A 16 522 522 HOH HOH . F 6 HOH A 17 523 523 HOH HOH . F 6 HOH A 18 524 524 HOH HOH . F 6 HOH A 19 525 525 HOH HOH . F 6 HOH A 20 526 526 HOH HOH . F 6 HOH A 21 527 527 HOH HOH . F 6 HOH A 22 528 528 HOH HOH . F 6 HOH A 23 529 529 HOH HOH . F 6 HOH A 24 530 530 HOH HOH . F 6 HOH A 25 531 531 HOH HOH . F 6 HOH A 26 532 532 HOH HOH . F 6 HOH A 27 533 533 HOH HOH . F 6 HOH A 28 534 534 HOH HOH . F 6 HOH A 29 535 535 HOH HOH . F 6 HOH A 30 536 536 HOH HOH . F 6 HOH A 31 537 537 HOH HOH . F 6 HOH A 32 538 538 HOH HOH . F 6 HOH A 33 539 539 HOH HOH . F 6 HOH A 34 540 540 HOH HOH . F 6 HOH A 35 541 541 HOH HOH . F 6 HOH A 36 542 542 HOH HOH . F 6 HOH A 37 543 543 HOH HOH . F 6 HOH A 38 544 544 HOH HOH . F 6 HOH A 39 545 545 HOH HOH . F 6 HOH A 40 546 546 HOH HOH . F 6 HOH A 41 547 547 HOH HOH . F 6 HOH A 42 548 548 HOH HOH . F 6 HOH A 43 549 549 HOH HOH . F 6 HOH A 44 550 550 HOH HOH . F 6 HOH A 45 551 551 HOH HOH . F 6 HOH A 46 552 552 HOH HOH . F 6 HOH A 47 553 553 HOH HOH . F 6 HOH A 48 554 554 HOH HOH . F 6 HOH A 49 555 555 HOH HOH . F 6 HOH A 50 556 556 HOH HOH . F 6 HOH A 51 557 557 HOH HOH . F 6 HOH A 52 558 558 HOH HOH . F 6 HOH A 53 559 559 HOH HOH . F 6 HOH A 54 560 560 HOH HOH . F 6 HOH A 55 561 561 HOH HOH . F 6 HOH A 56 562 562 HOH HOH . F 6 HOH A 57 563 563 HOH HOH . F 6 HOH A 58 564 564 HOH HOH . F 6 HOH A 59 565 565 HOH HOH . F 6 HOH A 60 566 566 HOH HOH . F 6 HOH A 61 567 567 HOH HOH . F 6 HOH A 62 568 568 HOH HOH . F 6 HOH A 63 569 569 HOH HOH . F 6 HOH A 64 570 570 HOH HOH . F 6 HOH A 65 571 571 HOH HOH . F 6 HOH A 66 572 572 HOH HOH . F 6 HOH A 67 573 573 HOH HOH . F 6 HOH A 68 574 574 HOH HOH . F 6 HOH A 69 575 575 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 40.79 -23.77 8.216 1 45.14 ? PA FAD 500 A 1 HETATM 2 O O1A FAD . . . B 2 42.004 -24.576 8.601 1 44.04 ? O1A FAD 500 A 1 HETATM 3 O O2A FAD . . . B 2 40.757 -22.475 8.985 1 36.89 ? O2A FAD 500 A 1 HETATM 4 O O5B FAD . . . B 2 39.472 -24.621 8.585 1 49.78 ? O5B FAD 500 A 1 HETATM 5 C C5B FAD . . . B 2 39.247 -25.94 8.158 1 38.79 ? C5B FAD 500 A 1 HETATM 6 C C4B FAD . . . B 2 38.435 -26.6 9.258 1 45.62 ? C4B FAD 500 A 1 HETATM 7 O O4B FAD . . . B 2 37.955 -27.853 8.828 1 54.21 ? O4B FAD 500 A 1 HETATM 8 C C3B FAD . . . B 2 39.286 -26.851 10.488 1 42.21 ? C3B FAD 500 A 1 HETATM 9 O O3B FAD . . . B 2 38.524 -26.462 11.604 1 45.94 ? O3B FAD 500 A 1 HETATM 10 C C2B FAD . . . B 2 39.525 -28.346 10.496 1 40.16 ? C2B FAD 500 A 1 HETATM 11 O O2B FAD . . . B 2 39.596 -28.845 11.813 1 42.01 ? O2B FAD 500 A 1 HETATM 12 C C1B FAD . . . B 2 38.271 -28.839 9.795 1 49.24 ? C1B FAD 500 A 1 HETATM 13 N N9A FAD . . . B 2 38.344 -30.189 9.183 1 37.95 ? N9A FAD 500 A 1 HETATM 14 C C8A FAD . . . B 2 39.277 -30.709 8.33 1 37.87 ? C8A FAD 500 A 1 HETATM 15 N N7A FAD . . . B 2 38.928 -31.982 8.017 1 42.98 ? N7A FAD 500 A 1 HETATM 16 C C5A FAD . . . B 2 37.762 -32.273 8.655 1 46.21 ? C5A FAD 500 A 1 HETATM 17 C C6A FAD . . . B 2 36.946 -33.411 8.707 1 43.39 ? C6A FAD 500 A 1 HETATM 18 N N6A FAD . . . B 2 37.298 -34.54 8.096 1 38.08 ? N6A FAD 500 A 1 HETATM 19 N N1A FAD . . . B 2 35.801 -33.395 9.48 1 42.25 ? N1A FAD 500 A 1 HETATM 20 C C2A FAD . . . B 2 35.467 -32.266 10.192 1 40.48 ? C2A FAD 500 A 1 HETATM 21 N N3A FAD . . . B 2 36.27 -31.147 10.14 1 35.2 ? N3A FAD 500 A 1 HETATM 22 C C4A FAD . . . B 2 37.395 -31.152 9.388 1 36.23 ? C4A FAD 500 A 1 HETATM 23 N N1 FAD . . . B 2 45.38 -15.598 5.713 1 44.17 ? N1 FAD 500 A 1 HETATM 24 C C2 FAD . . . B 2 45.177 -14.246 5.887 1 42.49 ? C2 FAD 500 A 1 HETATM 25 O O2 FAD . . . B 2 44.425 -13.658 5.121 1 34.15 ? O2 FAD 500 A 1 HETATM 26 N N3 FAD . . . B 2 46.075 -13.52 6.645 1 54.28 ? N3 FAD 500 A 1 HETATM 27 C C4 FAD . . . B 2 47.14 -14.149 7.257 1 51.88 ? C4 FAD 500 A 1 HETATM 28 O O4 FAD . . . B 2 47.938 -13.5 7.936 1 53.68 ? O4 FAD 500 A 1 HETATM 29 C C4X FAD . . . B 2 47.119 -15.534 7.349 1 50.39 ? C4X FAD 500 A 1 HETATM 30 N N5 FAD . . . B 2 48.048 -16.178 8.133 1 40.93 ? N5 FAD 500 A 1 HETATM 31 C C5X FAD . . . B 2 48.301 -17.508 7.902 1 42.02 ? C5X FAD 500 A 1 HETATM 32 C C6 FAD . . . B 2 49.187 -18.165 8.74 1 31.9 ? C6 FAD 500 A 1 HETATM 33 C C7 FAD . . . B 2 49.392 -19.525 8.592 1 37.49 ? C7 FAD 500 A 1 HETATM 34 C C7M FAD . . . B 2 50.201 -20.236 9.636 1 46.41 ? C7M FAD 500 A 1 HETATM 35 C C8 FAD . . . B 2 48.58 -20.262 7.729 1 39.8 ? C8 FAD 500 A 1 HETATM 36 C C8M FAD . . . B 2 48.482 -21.752 7.909 1 36.37 ? C8M FAD 500 A 1 HETATM 37 C C9 FAD . . . B 2 47.641 -19.611 6.933 1 41.13 ? C9 FAD 500 A 1 HETATM 38 C C9A FAD . . . B 2 47.449 -18.243 7.077 1 46.87 ? C9A FAD 500 A 1 HETATM 39 N N10 FAD . . . B 2 46.398 -17.631 6.428 1 39.59 ? N10 FAD 500 A 1 HETATM 40 C C10 FAD . . . B 2 46.229 -16.27 6.568 1 45.2 ? C10 FAD 500 A 1 HETATM 41 C C1' FAD . . . B 2 45.74 -18.351 5.289 1 49.08 ? C1' FAD 500 A 1 HETATM 42 C C2' FAD . . . B 2 44.302 -18.791 5.59 1 46.37 ? C2' FAD 500 A 1 HETATM 43 O O2' FAD . . . B 2 43.46 -17.673 5.747 1 35.84 ? O2' FAD 500 A 1 HETATM 44 C C3' FAD . . . B 2 44.153 -19.686 6.823 1 50.23 ? C3' FAD 500 A 1 HETATM 45 O O3' FAD . . . B 2 44.825 -20.917 6.641 1 36.77 ? O3' FAD 500 A 1 HETATM 46 C C4' FAD . . . B 2 42.663 -19.928 7.078 1 45.06 ? C4' FAD 500 A 1 HETATM 47 O O4' FAD . . . B 2 42.47 -20.55 8.329 1 31.45 ? O4' FAD 500 A 1 HETATM 48 C C5' FAD . . . B 2 42.031 -20.753 5.961 1 44.7 ? C5' FAD 500 A 1 HETATM 49 O O5' FAD . . . B 2 40.699 -21.031 6.324 1 53.86 ? O5' FAD 500 A 1 HETATM 50 P P FAD . . . B 2 39.89 -22.355 5.861 1 37.86 ? P FAD 500 A 1 HETATM 51 O O1P FAD . . . B 2 38.476 -22.216 6.365 1 25.53 ? O1P FAD 500 A 1 HETATM 52 O O2P FAD . . . B 2 39.915 -22.484 4.35 1 28.84 ? O2P FAD 500 A 1 HETATM 53 O O3P FAD . . . B 2 40.676 -23.576 6.607 1 35.86 ? O3P FAD 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #