data_3T38
#
_model_server_result.job_id            hOKlXjSEGGhQpPxWl7rCRA 
_model_server_result.datetime_utc      '2024-11-05 00:34:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t38 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3236}' 
#
_entry.id    3T38 
#
_exptl.entry_id    3T38 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              152.235 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.5 
_cell.angle_gamma         90 
_cell.entry_id            3T38 
_cell.length_a            41.8 
_cell.length_b            75.5 
_cell.length_c            58.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T38 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 159 A THR 159 1_555 A N MSE 160 A MSE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C MSE 160 A MSE 160 1_555 A N GLY 161 A GLY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C PRO 167 A PRO 167 1_555 A N MSE 168 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale4 A C MSE 168 A MSE 168 1_555 A N TYR 169 A TYR 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale5 B C THR 159 B THR 159 1_555 B N MSE 160 B MSE 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale6 B C MSE 160 B MSE 160 1_555 B N GLY 161 B GLY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale7 B C PRO 167 B PRO 167 1_555 B N MSE 168 B MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 B C MSE 168 B MSE 168 1_555 B N TYR 169 B TYR 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C4 H8 O2 S2' 
_chem_comp.formula_weight    152.235 
_chem_comp.id                D1D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3T38 
_atom_sites.fract_transf_matrix[1][1]    0.023923 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004434 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013245 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 D1D A 1 3236 3236 D1D D1D . 
D 3 HOH A 1 214 3 HOH HOH . 
D 3 HOH A 2 215 4 HOH HOH . 
D 3 HOH A 3 216 5 HOH HOH . 
D 3 HOH A 4 217 6 HOH HOH . 
D 3 HOH A 5 218 7 HOH HOH . 
D 3 HOH A 6 219 9 HOH HOH . 
D 3 HOH A 7 220 13 HOH HOH . 
D 3 HOH A 8 221 14 HOH HOH . 
D 3 HOH A 9 222 15 HOH HOH . 
D 3 HOH A 10 223 18 HOH HOH . 
D 3 HOH A 11 224 19 HOH HOH . 
D 3 HOH A 12 225 21 HOH HOH . 
D 3 HOH A 13 226 24 HOH HOH . 
D 3 HOH A 14 227 26 HOH HOH . 
D 3 HOH A 15 228 30 HOH HOH . 
D 3 HOH A 16 229 33 HOH HOH . 
D 3 HOH A 17 230 34 HOH HOH . 
D 3 HOH A 18 231 35 HOH HOH . 
D 3 HOH A 19 232 36 HOH HOH . 
D 3 HOH A 20 233 39 HOH HOH . 
D 3 HOH A 21 234 40 HOH HOH . 
D 3 HOH A 22 235 42 HOH HOH . 
D 3 HOH A 23 236 43 HOH HOH . 
D 3 HOH A 24 237 46 HOH HOH . 
D 3 HOH A 25 238 47 HOH HOH . 
D 3 HOH A 26 239 48 HOH HOH . 
D 3 HOH A 27 240 50 HOH HOH . 
D 3 HOH A 28 241 51 HOH HOH . 
D 3 HOH A 29 242 53 HOH HOH . 
D 3 HOH A 30 243 55 HOH HOH . 
D 3 HOH A 31 244 58 HOH HOH . 
D 3 HOH A 32 245 60 HOH HOH . 
D 3 HOH A 33 246 62 HOH HOH . 
D 3 HOH A 34 247 65 HOH HOH . 
D 3 HOH A 35 248 68 HOH HOH . 
D 3 HOH A 36 249 69 HOH HOH . 
E 3 HOH B 1 214 1 HOH HOH . 
E 3 HOH B 2 215 2 HOH HOH . 
E 3 HOH B 3 216 8 HOH HOH . 
E 3 HOH B 4 217 10 HOH HOH . 
E 3 HOH B 5 218 11 HOH HOH . 
E 3 HOH B 6 219 12 HOH HOH . 
E 3 HOH B 7 220 16 HOH HOH . 
E 3 HOH B 8 221 17 HOH HOH . 
E 3 HOH B 9 222 20 HOH HOH . 
E 3 HOH B 10 223 22 HOH HOH . 
E 3 HOH B 11 224 23 HOH HOH . 
E 3 HOH B 12 225 25 HOH HOH . 
E 3 HOH B 13 226 27 HOH HOH . 
E 3 HOH B 14 227 28 HOH HOH . 
E 3 HOH B 15 228 29 HOH HOH . 
E 3 HOH B 16 229 31 HOH HOH . 
E 3 HOH B 17 230 32 HOH HOH . 
E 3 HOH B 18 231 37 HOH HOH . 
E 3 HOH B 19 232 38 HOH HOH . 
E 3 HOH B 20 233 41 HOH HOH . 
E 3 HOH B 21 234 44 HOH HOH . 
E 3 HOH B 22 235 45 HOH HOH . 
E 3 HOH B 23 236 49 HOH HOH . 
E 3 HOH B 24 237 52 HOH HOH . 
E 3 HOH B 25 238 54 HOH HOH . 
E 3 HOH B 26 239 56 HOH HOH . 
E 3 HOH B 27 240 57 HOH HOH . 
E 3 HOH B 28 241 59 HOH HOH . 
E 3 HOH B 29 242 61 HOH HOH . 
E 3 HOH B 30 243 63 HOH HOH . 
E 3 HOH B 31 244 64 HOH HOH . 
E 3 HOH B 32 245 66 HOH HOH . 
E 3 HOH B 33 246 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 D1D . . . C 2 23.89 23.473 24.616 1 47.27 ? S1 D1D 3236 A 1 
HETATM 2 C C1 D1D . . . C 2 23.109 21.915 24.082 1 35.66 ? C1 D1D 3236 A 1 
HETATM 3 C C2 D1D . . . C 2 23.218 20.939 25.196 1 33.04 ? C2 D1D 3236 A 1 
HETATM 4 O O2 D1D . . . C 2 22.842 19.715 24.706 1 31.8 ? O2 D1D 3236 A 1 
HETATM 5 C C3 D1D . . . C 2 24.683 20.674 25.451 1 39.32 ? C3 D1D 3236 A 1 
HETATM 6 O O3 D1D . . . C 2 24.685 19.367 25.784 1 33.13 ? O3 D1D 3236 A 1 
HETATM 7 C C4 D1D . . . C 2 25.345 21.409 26.585 1 42.42 ? C4 D1D 3236 A 1 
HETATM 8 S S4 D1D . . . C 2 25.667 23.113 26.024 1 53.29 ? S4 D1D 3236 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#