data_3T3I # _model_server_result.job_id DNzaSvnb5KhWtez8QoXT0w _model_server_result.datetime_utc '2024-10-19 05:25:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":843}' # _entry.id 3T3I # _exptl.entry_id 3T3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(beta-D-glucopyranosyl)-5-(trifluoromethyl)pyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T3I _cell.length_a 128.759 _cell.length_b 128.759 _cell.length_c 116.557 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.557 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 679 A MET 679 1_555 A N LLP 680 A LLP 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C LLP 680 A LLP 680 1_555 A N PHE 681 A PHE 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C11 H13 F3 N2 O7' _chem_comp.formula_weight 342.225 _chem_comp.id GPW _chem_comp.mon_nstd_flag . _chem_comp.name 1-(beta-D-glucopyranosyl)-5-(trifluoromethyl)pyrimidine-2,4(1H,3H)-dione _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 1-(beta-D-glucosyl)-5-(trifluoromethyl)pyrimidine-2,4(1H,3H)-dione;1-(D-glucosyl)-5-(trifluoromethyl)pyrimidine-2,4(1H,3H)-dione;1-(glucosyl)-5-(trifluoromethyl)pyrimidine-2,4(1H,3H)-dione # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C7 GPW sing 129 n n N1 C2A GPW sing 130 n n N1 C6A GPW sing 131 n n N1 C1 GPW sing 132 n n C2A O2A GPW doub 133 n n C2A N3 GPW sing 134 n n F2 C7 GPW sing 135 n n F3 C7 GPW sing 136 n n N3 C4A GPW sing 137 n n C4A O4A GPW doub 138 n n C4A C5A GPW sing 139 n n C5A C6A GPW doub 140 n n C5A C7 GPW sing 141 n n C1 C2 GPW sing 142 n n C1 O5 GPW sing 143 n n C2 O2 GPW sing 144 n n C2 C3 GPW sing 145 n n C3 O3 GPW sing 146 n n C3 C4 GPW sing 147 n n C4 O4 GPW sing 148 n n C4 C5 GPW sing 149 n n C5 O5 GPW sing 150 n n C5 C6 GPW sing 151 n n C6 O6 GPW sing 152 n n N3 HN3 GPW sing 153 n n C6A H6 GPW sing 154 n n C1 H1 GPW sing 155 n n C2 H2 GPW sing 156 n n O2 HO2 GPW sing 157 n n C3 H3 GPW sing 158 n n O3 HO3 GPW sing 159 n n C4 H4 GPW sing 160 n n O4 HO4 GPW sing 161 n n C5 H5 GPW sing 162 n n C6 H61 GPW sing 163 n n C6 H62 GPW sing 164 n n O6 HO6 GPW sing 165 n n # _atom_sites.entry_id 3T3I _atom_sites.fract_transf_matrix[1][1] 0.007766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GPW A 1 843 1 GPW DRG . C 3 HOH A 1 844 1 HOH HOH . C 3 HOH A 2 845 2 HOH HOH . C 3 HOH A 3 846 3 HOH HOH . C 3 HOH A 4 847 4 HOH HOH . C 3 HOH A 5 848 5 HOH HOH . C 3 HOH A 6 849 6 HOH HOH . C 3 HOH A 7 850 7 HOH HOH . C 3 HOH A 8 851 8 HOH HOH . C 3 HOH A 9 852 9 HOH HOH . C 3 HOH A 10 853 10 HOH HOH . C 3 HOH A 11 854 11 HOH HOH . C 3 HOH A 12 855 12 HOH HOH . C 3 HOH A 13 856 13 HOH HOH . C 3 HOH A 14 857 14 HOH HOH . C 3 HOH A 15 858 15 HOH HOH . C 3 HOH A 16 859 16 HOH HOH . C 3 HOH A 17 860 17 HOH HOH . C 3 HOH A 18 861 18 HOH HOH . C 3 HOH A 19 862 19 HOH HOH . C 3 HOH A 20 863 20 HOH HOH . C 3 HOH A 21 864 21 HOH HOH . C 3 HOH A 22 865 22 HOH HOH . C 3 HOH A 23 866 23 HOH HOH . C 3 HOH A 24 867 24 HOH HOH . C 3 HOH A 25 868 25 HOH HOH . C 3 HOH A 26 869 26 HOH HOH . C 3 HOH A 27 870 27 HOH HOH . C 3 HOH A 28 871 28 HOH HOH . C 3 HOH A 29 872 29 HOH HOH . C 3 HOH A 30 873 30 HOH HOH . C 3 HOH A 31 874 31 HOH HOH . C 3 HOH A 32 875 32 HOH HOH . C 3 HOH A 33 876 33 HOH HOH . C 3 HOH A 34 877 34 HOH HOH . C 3 HOH A 35 878 35 HOH HOH . C 3 HOH A 36 879 36 HOH HOH . C 3 HOH A 37 880 37 HOH HOH . C 3 HOH A 38 881 38 HOH HOH . C 3 HOH A 39 882 39 HOH HOH . C 3 HOH A 40 883 40 HOH HOH . C 3 HOH A 41 884 41 HOH HOH . C 3 HOH A 42 885 42 HOH HOH . C 3 HOH A 43 886 43 HOH HOH . C 3 HOH A 44 887 44 HOH HOH . C 3 HOH A 45 888 45 HOH HOH . C 3 HOH A 46 889 46 HOH HOH . C 3 HOH A 47 890 47 HOH HOH . C 3 HOH A 48 891 48 HOH HOH . C 3 HOH A 49 892 49 HOH HOH . C 3 HOH A 50 893 50 HOH HOH . C 3 HOH A 51 894 51 HOH HOH . C 3 HOH A 52 895 52 HOH HOH . C 3 HOH A 53 896 53 HOH HOH . C 3 HOH A 54 897 54 HOH HOH . C 3 HOH A 55 898 55 HOH HOH . C 3 HOH A 56 899 56 HOH HOH . C 3 HOH A 57 900 57 HOH HOH . C 3 HOH A 58 901 58 HOH HOH . C 3 HOH A 59 902 59 HOH HOH . C 3 HOH A 60 903 60 HOH HOH . C 3 HOH A 61 904 61 HOH HOH . C 3 HOH A 62 905 62 HOH HOH . C 3 HOH A 63 906 63 HOH HOH . C 3 HOH A 64 907 64 HOH HOH . C 3 HOH A 65 908 65 HOH HOH . C 3 HOH A 66 909 66 HOH HOH . C 3 HOH A 67 910 67 HOH HOH . C 3 HOH A 68 911 68 HOH HOH . C 3 HOH A 69 912 69 HOH HOH . C 3 HOH A 70 913 70 HOH HOH . C 3 HOH A 71 914 71 HOH HOH . C 3 HOH A 72 915 72 HOH HOH . C 3 HOH A 73 916 73 HOH HOH . C 3 HOH A 74 917 74 HOH HOH . C 3 HOH A 75 918 75 HOH HOH . C 3 HOH A 76 919 76 HOH HOH . C 3 HOH A 77 920 77 HOH HOH . C 3 HOH A 78 921 78 HOH HOH . C 3 HOH A 79 922 79 HOH HOH . C 3 HOH A 80 923 80 HOH HOH . C 3 HOH A 81 924 81 HOH HOH . C 3 HOH A 82 925 82 HOH HOH . C 3 HOH A 83 926 83 HOH HOH . C 3 HOH A 84 927 84 HOH HOH . C 3 HOH A 85 928 85 HOH HOH . C 3 HOH A 86 929 86 HOH HOH . C 3 HOH A 87 930 87 HOH HOH . C 3 HOH A 88 931 88 HOH HOH . C 3 HOH A 89 932 89 HOH HOH . C 3 HOH A 90 933 90 HOH HOH . C 3 HOH A 91 934 91 HOH HOH . C 3 HOH A 92 935 92 HOH HOH . C 3 HOH A 93 936 93 HOH HOH . C 3 HOH A 94 937 94 HOH HOH . C 3 HOH A 95 938 95 HOH HOH . C 3 HOH A 96 939 96 HOH HOH . C 3 HOH A 97 940 97 HOH HOH . C 3 HOH A 98 941 98 HOH HOH . C 3 HOH A 99 942 99 HOH HOH . C 3 HOH A 100 943 100 HOH HOH . C 3 HOH A 101 944 101 HOH HOH . C 3 HOH A 102 945 102 HOH HOH . C 3 HOH A 103 946 103 HOH HOH . C 3 HOH A 104 947 104 HOH HOH . C 3 HOH A 105 948 105 HOH HOH . C 3 HOH A 106 949 106 HOH HOH . C 3 HOH A 107 950 107 HOH HOH . C 3 HOH A 108 951 108 HOH HOH . C 3 HOH A 109 952 109 HOH HOH . C 3 HOH A 110 953 110 HOH HOH . C 3 HOH A 111 954 111 HOH HOH . C 3 HOH A 112 955 112 HOH HOH . C 3 HOH A 113 956 113 HOH HOH . C 3 HOH A 114 957 114 HOH HOH . C 3 HOH A 115 958 115 HOH HOH . C 3 HOH A 116 959 116 HOH HOH . C 3 HOH A 117 960 117 HOH HOH . C 3 HOH A 118 961 118 HOH HOH . C 3 HOH A 119 962 119 HOH HOH . C 3 HOH A 120 963 120 HOH HOH . C 3 HOH A 121 964 121 HOH HOH . C 3 HOH A 122 965 122 HOH HOH . C 3 HOH A 123 966 123 HOH HOH . C 3 HOH A 124 967 124 HOH HOH . C 3 HOH A 125 968 125 HOH HOH . C 3 HOH A 126 969 126 HOH HOH . C 3 HOH A 127 970 127 HOH HOH . C 3 HOH A 128 971 128 HOH HOH . C 3 HOH A 129 972 129 HOH HOH . C 3 HOH A 130 973 130 HOH HOH . C 3 HOH A 131 974 131 HOH HOH . C 3 HOH A 132 975 132 HOH HOH . C 3 HOH A 133 976 133 HOH HOH . C 3 HOH A 134 977 134 HOH HOH . C 3 HOH A 135 978 135 HOH HOH . C 3 HOH A 136 979 136 HOH HOH . C 3 HOH A 137 980 137 HOH HOH . C 3 HOH A 138 981 138 HOH HOH . C 3 HOH A 139 982 139 HOH HOH . C 3 HOH A 140 983 140 HOH HOH . C 3 HOH A 141 984 141 HOH HOH . C 3 HOH A 142 985 142 HOH HOH . C 3 HOH A 143 986 143 HOH HOH . C 3 HOH A 144 987 144 HOH HOH . C 3 HOH A 145 988 145 HOH HOH . C 3 HOH A 146 989 146 HOH HOH . C 3 HOH A 147 990 147 HOH HOH . C 3 HOH A 148 991 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 GPW . . . B 2 38.463 25.08 29.908 1 25.92 ? F1 GPW 843 A 1 HETATM 2 N N1 GPW . . . B 2 34.136 23.576 29.084 1 26.79 ? N1 GPW 843 A 1 HETATM 3 C C2A GPW . . . B 2 33.432 24.421 29.976 1 27.49 ? C2A GPW 843 A 1 HETATM 4 F F2 GPW . . . B 2 38.088 23.676 31.496 1 30.54 ? F2 GPW 843 A 1 HETATM 5 O O2A GPW . . . B 2 32.203 24.515 29.88 1 30.1 ? O2A GPW 843 A 1 HETATM 6 F F3 GPW . . . B 2 38.147 22.995 29.523 1 28.5 ? F3 GPW 843 A 1 HETATM 7 N N3 GPW . . . B 2 34.126 25.169 30.952 1 26.92 ? N3 GPW 843 A 1 HETATM 8 C C4A GPW . . . B 2 35.535 25.047 31.026 1 28.68 ? C4A GPW 843 A 1 HETATM 9 O O4A GPW . . . B 2 36.146 25.691 31.873 1 28.4 ? O4A GPW 843 A 1 HETATM 10 C C5A GPW . . . B 2 36.237 24.202 30.139 1 28.99 ? C5A GPW 843 A 1 HETATM 11 C C6A GPW . . . B 2 35.532 23.471 29.169 1 27.14 ? C6A GPW 843 A 1 HETATM 12 C C7 GPW . . . B 2 37.774 24.021 30.248 1 28.07 ? C7 GPW 843 A 1 HETATM 13 C C1 GPW . . . B 2 33.359 22.826 28.045 1 25.87 ? C1 GPW 843 A 1 HETATM 14 C C2 GPW . . . B 2 33.812 23.072 26.567 1 25.12 ? C2 GPW 843 A 1 HETATM 15 O O2 GPW . . . B 2 34.013 24.484 26.324 1 24.1 ? O2 GPW 843 A 1 HETATM 16 C C3 GPW . . . B 2 32.776 22.431 25.595 1 23.96 ? C3 GPW 843 A 1 HETATM 17 O O3 GPW . . . B 2 33.163 22.504 24.209 1 20.7 ? O3 GPW 843 A 1 HETATM 18 C C4 GPW . . . B 2 32.527 20.955 25.973 1 25.18 ? C4 GPW 843 A 1 HETATM 19 O O4 GPW . . . B 2 31.375 20.492 25.24 1 26.85 ? O4 GPW 843 A 1 HETATM 20 C C5 GPW . . . B 2 32.329 20.752 27.513 1 23.37 ? C5 GPW 843 A 1 HETATM 21 O O5 GPW . . . B 2 33.317 21.415 28.31 1 23.81 ? O5 GPW 843 A 1 HETATM 22 C C6 GPW . . . B 2 32.449 19.346 28.063 1 20.29 ? C6 GPW 843 A 1 HETATM 23 O O6 GPW . . . B 2 33.086 18.45 27.162 1 21.65 ? O6 GPW 843 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #