data_3T3O
#
_model_server_result.job_id            6-mnjFquoj4Qj8OWRrQE6A 
_model_server_result.datetime_utc      '2025-01-02 21:38:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t3o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    3T3O 
#
_exptl.entry_id    3T3O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3T3O 
_cell.length_a            99.35 
_cell.length_b            117.94 
_cell.length_c            229.39 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T3O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' OMC 1 B OMC 901 1_555 B P OMU 2 B OMU 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale2 B O3' OMU 2 B OMU 902 1_555 B P OMG 3 B OMG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? 
covale ? covale3 B O3' OMG 3 B OMG 903 1_555 B P OMG 4 B OMG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? 
covale ? covale4 B O3' OMG 4 B OMG 904 1_555 B P U 5 B U 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? 
metalc ? metalc1 A OD2 ASP 87 A ASP 79 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc2 A NE2 HIS 88 A HIS 80 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc3 A OD2 ASP 180 A ASP 172 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc4 A NE2 HIS 406 A HIS 398 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     3T3O 
_atom_sites.fract_transf_matrix[1][1]    0.010065 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 600 600 ZN ZN . 
D 4 GOL A 1 701 701 GOL GOL . 
E 5 HOH A 1 555 555 HOH HOH . 
E 5 HOH A 2 556 556 HOH HOH . 
E 5 HOH A 3 557 557 HOH HOH . 
E 5 HOH A 4 558 558 HOH HOH . 
E 5 HOH A 5 559 559 HOH HOH . 
E 5 HOH A 6 560 560 HOH HOH . 
E 5 HOH A 7 561 561 HOH HOH . 
E 5 HOH A 8 562 562 HOH HOH . 
E 5 HOH A 9 563 563 HOH HOH . 
E 5 HOH A 10 564 564 HOH HOH . 
E 5 HOH A 11 565 565 HOH HOH . 
E 5 HOH A 12 566 566 HOH HOH . 
E 5 HOH A 13 567 567 HOH HOH . 
E 5 HOH A 14 568 568 HOH HOH . 
E 5 HOH A 15 569 569 HOH HOH . 
E 5 HOH A 16 570 570 HOH HOH . 
E 5 HOH A 17 571 571 HOH HOH . 
E 5 HOH A 18 572 572 HOH HOH . 
E 5 HOH A 19 573 573 HOH HOH . 
E 5 HOH A 20 574 574 HOH HOH . 
E 5 HOH A 21 575 575 HOH HOH . 
E 5 HOH A 22 576 576 HOH HOH . 
E 5 HOH A 23 577 577 HOH HOH . 
E 5 HOH A 24 578 578 HOH HOH . 
E 5 HOH A 25 579 579 HOH HOH . 
E 5 HOH A 26 580 580 HOH HOH . 
E 5 HOH A 27 581 581 HOH HOH . 
E 5 HOH A 28 582 582 HOH HOH . 
E 5 HOH A 29 583 583 HOH HOH . 
E 5 HOH A 30 584 584 HOH HOH . 
E 5 HOH A 31 585 585 HOH HOH . 
E 5 HOH A 32 586 586 HOH HOH . 
E 5 HOH A 33 587 587 HOH HOH . 
E 5 HOH A 34 588 588 HOH HOH . 
E 5 HOH A 35 589 589 HOH HOH . 
E 5 HOH A 36 590 590 HOH HOH . 
E 5 HOH A 37 591 591 HOH HOH . 
E 5 HOH A 38 592 592 HOH HOH . 
E 5 HOH A 39 593 593 HOH HOH . 
E 5 HOH A 40 594 594 HOH HOH . 
E 5 HOH A 41 595 595 HOH HOH . 
E 5 HOH A 42 596 596 HOH HOH . 
E 5 HOH A 43 597 597 HOH HOH . 
E 5 HOH A 44 598 598 HOH HOH . 
E 5 HOH A 45 599 599 HOH HOH . 
E 5 HOH A 46 601 601 HOH HOH . 
E 5 HOH A 47 602 602 HOH HOH . 
E 5 HOH A 48 603 603 HOH HOH . 
E 5 HOH A 49 604 604 HOH HOH . 
E 5 HOH A 50 605 605 HOH HOH . 
E 5 HOH A 51 606 606 HOH HOH . 
E 5 HOH A 52 607 607 HOH HOH . 
E 5 HOH A 53 608 608 HOH HOH . 
E 5 HOH A 54 609 609 HOH HOH . 
E 5 HOH A 55 610 610 HOH HOH . 
E 5 HOH A 56 611 611 HOH HOH . 
E 5 HOH A 57 612 612 HOH HOH . 
E 5 HOH A 58 613 613 HOH HOH . 
E 5 HOH A 59 614 614 HOH HOH . 
E 5 HOH A 60 615 615 HOH HOH . 
E 5 HOH A 61 616 616 HOH HOH . 
E 5 HOH A 62 617 617 HOH HOH . 
E 5 HOH A 63 618 618 HOH HOH . 
E 5 HOH A 64 619 619 HOH HOH . 
E 5 HOH A 65 620 620 HOH HOH . 
E 5 HOH A 66 621 621 HOH HOH . 
E 5 HOH A 67 622 622 HOH HOH . 
E 5 HOH A 68 623 623 HOH HOH . 
E 5 HOH A 69 624 624 HOH HOH . 
E 5 HOH A 70 625 625 HOH HOH . 
E 5 HOH A 71 626 626 HOH HOH . 
E 5 HOH A 72 627 627 HOH HOH . 
E 5 HOH A 73 628 628 HOH HOH . 
E 5 HOH A 74 629 629 HOH HOH . 
E 5 HOH A 75 630 630 HOH HOH . 
E 5 HOH A 76 631 631 HOH HOH . 
E 5 HOH A 77 633 633 HOH HOH . 
E 5 HOH A 78 634 634 HOH HOH . 
E 5 HOH A 79 635 635 HOH HOH . 
E 5 HOH A 80 636 636 HOH HOH . 
E 5 HOH A 81 637 637 HOH HOH . 
E 5 HOH A 82 638 638 HOH HOH . 
E 5 HOH A 83 639 639 HOH HOH . 
E 5 HOH A 84 640 640 HOH HOH . 
E 5 HOH A 85 641 641 HOH HOH . 
E 5 HOH A 86 642 642 HOH HOH . 
E 5 HOH A 87 643 643 HOH HOH . 
E 5 HOH A 88 644 644 HOH HOH . 
E 5 HOH A 89 645 645 HOH HOH . 
E 5 HOH A 90 646 646 HOH HOH . 
E 5 HOH A 91 647 647 HOH HOH . 
E 5 HOH A 92 648 648 HOH HOH . 
E 5 HOH A 93 649 649 HOH HOH . 
E 5 HOH A 94 650 650 HOH HOH . 
E 5 HOH A 95 651 651 HOH HOH . 
E 5 HOH A 96 653 653 HOH HOH . 
F 5 HOH B 1 652 652 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 34.723 -17.223 32.676 1 78.75 ? C1 GOL 701 A 1 
HETATM 2 O O1 GOL . . . D 4 34.678 -17.994 31.472 1 77.89 ? O1 GOL 701 A 1 
HETATM 3 C C2 GOL . . . D 4 33.5 -16.293 32.775 1 78.56 ? C2 GOL 701 A 1 
HETATM 4 O O2 GOL . . . D 4 33.906 -14.95 32.464 1 79.12 ? O2 GOL 701 A 1 
HETATM 5 C C3 GOL . . . D 4 32.921 -16.356 34.204 1 78.69 ? C3 GOL 701 A 1 
HETATM 6 O O3 GOL . . . D 4 31.88 -15.386 34.383 1 78.51 ? O3 GOL 701 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           382 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           6 
#