data_3T3R # _model_server_result.job_id hgbk5l-0OFqYu6l3zSzXAw _model_server_result.datetime_utc '2024-11-24 04:12:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 3T3R # _exptl.entry_id 3T3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.257 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,4R)-3-ethyl-4-[(1-methyl-1H-imidazol-5-yl)methyl]dihydrofuran-2(3H)-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.1 _cell.angle_gamma 90 _cell.entry_id 3T3R _cell.length_a 70.336 _cell.length_b 158.005 _cell.length_c 104.453 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 439 1_555 E FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 E FE HEM . A HEM 500 1_555 F N3 9PL . A 9PL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 B SG CYS 417 B CYS 439 1_555 G FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 G FE HEM . B HEM 500 1_555 H N3 9PL . B 9PL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 C SG CYS 417 C CYS 439 1_555 I FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc6 I FE HEM . C HEM 500 1_555 J N3 9PL . C 9PL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc7 D SG CYS 417 D CYS 439 1_555 K FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc8 K FE HEM . D HEM 500 1_555 L N3 9PL . D 9PL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C11 H16 N2 O2' _chem_comp.formula_weight 208.257 _chem_comp.id 9PL _chem_comp.mon_nstd_flag . _chem_comp.name (3S,4R)-3-ethyl-4-[(1-methyl-1H-imidazol-5-yl)methyl]dihydrofuran-2(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PILOCARPINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 N1 9PL sing 1 n y N1 C2 9PL sing 2 n y N1 C6 9PL sing 3 n n N3 C2 9PL doub 4 n y C2 H2 9PL sing 5 n n C4 N3 9PL sing 6 n y C4 C5 9PL doub 7 n y C4 H4 9PL sing 8 n n C7 C5 9PL sing 9 n n C6 H6 9PL sing 10 n n C6 H6A 9PL sing 11 n n C6 H6B 9PL sing 12 n n C8 C7 9PL sing 13 n n C7 H7 9PL sing 14 n n C7 H7A 9PL sing 15 n n C12 C8 9PL sing 16 n n C9 C8 9PL sing 17 n n C8 H8 9PL sing 18 n n O10 C9 9PL sing 19 n n C9 H9 9PL sing 20 n n C9 H9A 9PL sing 21 n n C11 O10 9PL sing 22 n n O15 C11 9PL doub 23 n n C11 C12 9PL sing 24 n n C13 C12 9PL sing 25 n n C12 H12 9PL sing 26 n n C14 C13 9PL sing 27 n n C13 H13 9PL sing 28 n n C13 H13A 9PL sing 29 n n C14 H14 9PL sing 30 n n C14 H14A 9PL sing 31 n n C14 H14B 9PL sing 32 n n # _atom_sites.entry_id 3T3R _atom_sites.fract_transf_matrix[1][1] 0.014217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000521 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 500 500 HEM HEM . F 3 9PL A 1 501 501 9PL 9PL . G 2 HEM B 1 500 500 HEM HEM . H 3 9PL B 1 501 501 9PL 9PL . I 2 HEM C 1 500 500 HEM HEM . J 3 9PL C 1 501 501 9PL 9PL . K 2 HEM D 1 500 500 HEM HEM . L 3 9PL D 1 501 501 9PL 9PL . M 4 HOH A 1 1 1 HOH HOH . M 4 HOH A 2 12 12 HOH HOH . M 4 HOH A 3 14 14 HOH HOH . M 4 HOH A 4 16 16 HOH HOH . M 4 HOH A 5 20 20 HOH HOH . M 4 HOH A 6 499 499 HOH HOH . M 4 HOH A 7 502 502 HOH HOH . M 4 HOH A 8 503 503 HOH HOH . M 4 HOH A 9 504 504 HOH HOH . M 4 HOH A 10 505 505 HOH HOH . M 4 HOH A 11 506 506 HOH HOH . M 4 HOH A 12 507 507 HOH HOH . M 4 HOH A 13 508 508 HOH HOH . M 4 HOH A 14 509 509 HOH HOH . M 4 HOH A 15 510 510 HOH HOH . M 4 HOH A 16 511 511 HOH HOH . M 4 HOH A 17 512 512 HOH HOH . M 4 HOH A 18 513 513 HOH HOH . M 4 HOH A 19 514 514 HOH HOH . M 4 HOH A 20 515 515 HOH HOH . M 4 HOH A 21 516 516 HOH HOH . M 4 HOH A 22 517 517 HOH HOH . M 4 HOH A 23 518 518 HOH HOH . M 4 HOH A 24 519 519 HOH HOH . M 4 HOH A 25 520 520 HOH HOH . M 4 HOH A 26 521 521 HOH HOH . M 4 HOH A 27 522 522 HOH HOH . M 4 HOH A 28 523 523 HOH HOH . M 4 HOH A 29 524 524 HOH HOH . M 4 HOH A 30 525 525 HOH HOH . M 4 HOH A 31 526 526 HOH HOH . M 4 HOH A 32 527 527 HOH HOH . M 4 HOH A 33 528 528 HOH HOH . M 4 HOH A 34 529 529 HOH HOH . M 4 HOH A 35 530 530 HOH HOH . M 4 HOH A 36 531 531 HOH HOH . M 4 HOH A 37 532 532 HOH HOH . M 4 HOH A 38 533 533 HOH HOH . M 4 HOH A 39 534 534 HOH HOH . M 4 HOH A 40 535 535 HOH HOH . M 4 HOH A 41 536 536 HOH HOH . M 4 HOH A 42 537 537 HOH HOH . M 4 HOH A 43 538 538 HOH HOH . M 4 HOH A 44 539 539 HOH HOH . M 4 HOH A 45 540 540 HOH HOH . M 4 HOH A 46 541 541 HOH HOH . M 4 HOH A 47 542 542 HOH HOH . M 4 HOH A 48 543 543 HOH HOH . M 4 HOH A 49 544 544 HOH HOH . M 4 HOH A 50 545 545 HOH HOH . M 4 HOH A 51 546 546 HOH HOH . M 4 HOH A 52 547 547 HOH HOH . M 4 HOH A 53 548 548 HOH HOH . M 4 HOH A 54 549 549 HOH HOH . M 4 HOH A 55 550 550 HOH HOH . M 4 HOH A 56 551 551 HOH HOH . M 4 HOH A 57 552 552 HOH HOH . N 4 HOH B 1 4 4 HOH HOH . N 4 HOH B 2 11 11 HOH HOH . N 4 HOH B 3 21 21 HOH HOH . N 4 HOH B 4 499 499 HOH HOH . N 4 HOH B 5 502 502 HOH HOH . N 4 HOH B 6 503 503 HOH HOH . N 4 HOH B 7 504 504 HOH HOH . N 4 HOH B 8 505 505 HOH HOH . N 4 HOH B 9 506 506 HOH HOH . N 4 HOH B 10 507 507 HOH HOH . N 4 HOH B 11 508 508 HOH HOH . N 4 HOH B 12 509 509 HOH HOH . N 4 HOH B 13 510 510 HOH HOH . N 4 HOH B 14 511 511 HOH HOH . N 4 HOH B 15 512 512 HOH HOH . N 4 HOH B 16 513 513 HOH HOH . N 4 HOH B 17 514 514 HOH HOH . N 4 HOH B 18 515 515 HOH HOH . N 4 HOH B 19 516 516 HOH HOH . N 4 HOH B 20 517 517 HOH HOH . N 4 HOH B 21 518 518 HOH HOH . N 4 HOH B 22 519 519 HOH HOH . N 4 HOH B 23 520 520 HOH HOH . N 4 HOH B 24 521 521 HOH HOH . N 4 HOH B 25 522 522 HOH HOH . N 4 HOH B 26 523 523 HOH HOH . N 4 HOH B 27 524 524 HOH HOH . N 4 HOH B 28 525 525 HOH HOH . N 4 HOH B 29 526 526 HOH HOH . N 4 HOH B 30 527 527 HOH HOH . N 4 HOH B 31 528 528 HOH HOH . N 4 HOH B 32 529 529 HOH HOH . N 4 HOH B 33 530 530 HOH HOH . N 4 HOH B 34 531 531 HOH HOH . N 4 HOH B 35 532 532 HOH HOH . N 4 HOH B 36 533 533 HOH HOH . N 4 HOH B 37 534 534 HOH HOH . N 4 HOH B 38 535 535 HOH HOH . N 4 HOH B 39 536 536 HOH HOH . N 4 HOH B 40 537 537 HOH HOH . N 4 HOH B 41 538 538 HOH HOH . N 4 HOH B 42 539 539 HOH HOH . N 4 HOH B 43 540 540 HOH HOH . N 4 HOH B 44 541 541 HOH HOH . N 4 HOH B 45 542 542 HOH HOH . N 4 HOH B 46 543 543 HOH HOH . N 4 HOH B 47 544 544 HOH HOH . N 4 HOH B 48 545 545 HOH HOH . N 4 HOH B 49 546 546 HOH HOH . N 4 HOH B 50 547 547 HOH HOH . N 4 HOH B 51 548 548 HOH HOH . N 4 HOH B 52 549 549 HOH HOH . N 4 HOH B 53 550 550 HOH HOH . N 4 HOH B 54 551 551 HOH HOH . N 4 HOH B 55 552 552 HOH HOH . N 4 HOH B 56 553 553 HOH HOH . O 4 HOH C 1 5 5 HOH HOH . O 4 HOH C 2 6 6 HOH HOH . O 4 HOH C 3 8 8 HOH HOH . O 4 HOH C 4 10 10 HOH HOH . O 4 HOH C 5 13 13 HOH HOH . O 4 HOH C 6 17 17 HOH HOH . O 4 HOH C 7 19 19 HOH HOH . O 4 HOH C 8 499 499 HOH HOH . O 4 HOH C 9 502 502 HOH HOH . O 4 HOH C 10 503 503 HOH HOH . O 4 HOH C 11 504 504 HOH HOH . O 4 HOH C 12 505 505 HOH HOH . O 4 HOH C 13 506 506 HOH HOH . O 4 HOH C 14 507 507 HOH HOH . O 4 HOH C 15 508 508 HOH HOH . O 4 HOH C 16 509 509 HOH HOH . O 4 HOH C 17 510 510 HOH HOH . O 4 HOH C 18 511 511 HOH HOH . O 4 HOH C 19 512 512 HOH HOH . O 4 HOH C 20 513 513 HOH HOH . O 4 HOH C 21 514 514 HOH HOH . O 4 HOH C 22 515 515 HOH HOH . O 4 HOH C 23 516 516 HOH HOH . O 4 HOH C 24 517 517 HOH HOH . O 4 HOH C 25 518 518 HOH HOH . O 4 HOH C 26 519 519 HOH HOH . O 4 HOH C 27 520 520 HOH HOH . O 4 HOH C 28 521 521 HOH HOH . O 4 HOH C 29 522 522 HOH HOH . O 4 HOH C 30 523 523 HOH HOH . O 4 HOH C 31 524 524 HOH HOH . O 4 HOH C 32 525 525 HOH HOH . O 4 HOH C 33 526 526 HOH HOH . O 4 HOH C 34 527 527 HOH HOH . O 4 HOH C 35 528 528 HOH HOH . O 4 HOH C 36 529 529 HOH HOH . O 4 HOH C 37 530 530 HOH HOH . O 4 HOH C 38 531 531 HOH HOH . O 4 HOH C 39 532 532 HOH HOH . O 4 HOH C 40 533 533 HOH HOH . O 4 HOH C 41 534 534 HOH HOH . O 4 HOH C 42 535 535 HOH HOH . O 4 HOH C 43 536 536 HOH HOH . O 4 HOH C 44 537 537 HOH HOH . O 4 HOH C 45 538 538 HOH HOH . O 4 HOH C 46 539 539 HOH HOH . O 4 HOH C 47 540 540 HOH HOH . O 4 HOH C 48 541 541 HOH HOH . O 4 HOH C 49 542 542 HOH HOH . O 4 HOH C 50 543 543 HOH HOH . O 4 HOH C 51 544 544 HOH HOH . O 4 HOH C 52 545 545 HOH HOH . O 4 HOH C 53 546 546 HOH HOH . O 4 HOH C 54 547 547 HOH HOH . O 4 HOH C 55 548 548 HOH HOH . O 4 HOH C 56 549 549 HOH HOH . O 4 HOH C 57 550 550 HOH HOH . O 4 HOH C 58 551 551 HOH HOH . O 4 HOH C 59 552 552 HOH HOH . O 4 HOH C 60 553 553 HOH HOH . O 4 HOH C 61 554 554 HOH HOH . O 4 HOH C 62 555 555 HOH HOH . O 4 HOH C 63 556 556 HOH HOH . O 4 HOH C 64 557 557 HOH HOH . O 4 HOH C 65 558 558 HOH HOH . O 4 HOH C 66 559 559 HOH HOH . P 4 HOH D 1 7 7 HOH HOH . P 4 HOH D 2 9 9 HOH HOH . P 4 HOH D 3 18 18 HOH HOH . P 4 HOH D 4 22 22 HOH HOH . P 4 HOH D 5 499 499 HOH HOH . P 4 HOH D 6 502 502 HOH HOH . P 4 HOH D 7 503 503 HOH HOH . P 4 HOH D 8 504 504 HOH HOH . P 4 HOH D 9 505 505 HOH HOH . P 4 HOH D 10 506 506 HOH HOH . P 4 HOH D 11 507 507 HOH HOH . P 4 HOH D 12 508 508 HOH HOH . P 4 HOH D 13 509 509 HOH HOH . P 4 HOH D 14 510 510 HOH HOH . P 4 HOH D 15 511 511 HOH HOH . P 4 HOH D 16 512 512 HOH HOH . P 4 HOH D 17 513 513 HOH HOH . P 4 HOH D 18 514 514 HOH HOH . P 4 HOH D 19 515 515 HOH HOH . P 4 HOH D 20 516 516 HOH HOH . P 4 HOH D 21 517 517 HOH HOH . P 4 HOH D 22 518 518 HOH HOH . P 4 HOH D 23 519 519 HOH HOH . P 4 HOH D 24 520 520 HOH HOH . P 4 HOH D 25 521 521 HOH HOH . P 4 HOH D 26 522 522 HOH HOH . P 4 HOH D 27 523 523 HOH HOH . P 4 HOH D 28 524 524 HOH HOH . P 4 HOH D 29 525 525 HOH HOH . P 4 HOH D 30 526 526 HOH HOH . P 4 HOH D 31 527 527 HOH HOH . P 4 HOH D 32 528 528 HOH HOH . P 4 HOH D 33 529 529 HOH HOH . P 4 HOH D 34 530 530 HOH HOH . P 4 HOH D 35 531 531 HOH HOH . P 4 HOH D 36 532 532 HOH HOH . P 4 HOH D 37 533 533 HOH HOH . P 4 HOH D 38 534 534 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 9PL . . . L 3 14.031 69.926 1.372 1 32.91 ? N1 9PL 501 D 1 HETATM 2 C C2 9PL . . . L 3 14.547 69.011 0.547 1 32.02 ? C2 9PL 501 D 1 HETATM 3 N N3 9PL . . . L 3 14.905 67.929 1.252 1 31.21 ? N3 9PL 501 D 1 HETATM 4 C C4 9PL . . . L 3 14.623 68.162 2.545 1 32.3 ? C4 9PL 501 D 1 HETATM 5 C C5 9PL . . . L 3 14.068 69.424 2.624 1 33.09 ? C5 9PL 501 D 1 HETATM 6 C C6 9PL . . . L 3 13.526 71.252 0.928 1 32.16 ? C6 9PL 501 D 1 HETATM 7 C C7 9PL . . . L 3 13.596 70.056 3.916 1 32.97 ? C7 9PL 501 D 1 HETATM 8 C C8 9PL . . . L 3 12.071 70.055 3.961 1 33.26 ? C8 9PL 501 D 1 HETATM 9 C C9 9PL . . . L 3 11.451 68.657 3.855 1 33.55 ? C9 9PL 501 D 1 HETATM 10 O O10 9PL . . . L 3 10.184 68.802 4.499 1 34.28 ? O10 9PL 501 D 1 HETATM 11 C C11 9PL . . . L 3 10.076 70.096 5.124 1 33.69 ? C11 9PL 501 D 1 HETATM 12 C C12 9PL . . . L 3 11.369 70.83 5.087 1 34.27 ? C12 9PL 501 D 1 HETATM 13 C C13 9PL . . . L 3 11.984 70.68 6.469 1 33.95 ? C13 9PL 501 D 1 HETATM 14 C C14 9PL . . . L 3 12.964 71.791 6.765 1 34.09 ? C14 9PL 501 D 1 HETATM 15 O O15 9PL . . . L 3 9.04 70.515 5.595 1 34.05 ? O15 9PL 501 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #