data_3T3S
#
_model_server_result.job_id            '_LWfYprMG4eshmPif0-mjA' 
_model_server_result.datetime_utc      '2024-11-24 00:40:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t3s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":500}' 
#
_entry.id    3T3S 
#
_exptl.entry_id    3T3S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         101.01 
_cell.angle_beta          101.72 
_cell.angle_gamma         93.59 
_cell.entry_id            3T3S 
_cell.length_a            71.501 
_cell.length_b            119.862 
_cell.length_c            154.871 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T3S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J,W 1 1 
B,K,L,X 2 1 
C,M,N,Y 3 1 
D,O,P,Z 4 1 
E,Q,R,AA 5 1 
F,S,T 6 1 
G,U,BA 7 1 
H,V,CA 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 J N3 9PL . A 9PL 1 1_555 I FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc2 A SG CYS 417 A CYS 439 1_555 I FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc3 L N3 9PL . B 9PL 1 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc4 B SG CYS 417 B CYS 439 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc5 N N3 9PL . C 9PL 1 1_555 M FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc6 C SG CYS 417 C CYS 439 1_555 M FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc7 P N3 9PL . D 9PL 1 1_555 O FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc8 D SG CYS 417 D CYS 439 1_555 O FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc9 R N3 9PL . E 9PL 1 1_555 Q FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc10 E SG CYS 417 E CYS 439 1_555 Q FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc11 T N3 9PL . F 9PL 1 1_555 S FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc12 F SG CYS 417 F CYS 439 1_555 S FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc13 G SG CYS 417 G CYS 439 1_555 U FE HEM . G HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc14 H SG CYS 417 H CYS 439 1_555 V FE HEM . H HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 161 n n 
CHA C4D HEM doub 162 n n 
CHA HHA HEM sing 163 n n 
CHB C4A HEM sing 164 n n 
CHB C1B HEM doub 165 n n 
CHB HHB HEM sing 166 n n 
CHC C4B HEM sing 167 n n 
CHC C1C HEM doub 168 n n 
CHC HHC HEM sing 169 n n 
CHD C4C HEM doub 170 n n 
CHD C1D HEM sing 171 n n 
CHD HHD HEM sing 172 n n 
C1A C2A HEM doub 173 n y 
C1A NA HEM sing 174 n y 
C2A C3A HEM sing 175 n y 
C2A CAA HEM sing 176 n n 
C3A C4A HEM doub 177 n y 
C3A CMA HEM sing 178 n n 
C4A NA HEM sing 179 n y 
CMA HMA HEM sing 180 n n 
CMA HMAA HEM sing 181 n n 
CMA HMAB HEM sing 182 n n 
CAA CBA HEM sing 183 n n 
CAA HAA HEM sing 184 n n 
CAA HAAA HEM sing 185 n n 
CBA CGA HEM sing 186 n n 
CBA HBA HEM sing 187 n n 
CBA HBAA HEM sing 188 n n 
CGA O1A HEM doub 189 n n 
CGA O2A HEM sing 190 n n 
C1B C2B HEM sing 191 n n 
C1B NB HEM sing 192 n n 
C2B C3B HEM doub 193 n n 
C2B CMB HEM sing 194 n n 
C3B C4B HEM sing 195 n n 
C3B CAB HEM sing 196 n n 
C4B NB HEM doub 197 n n 
CMB HMB HEM sing 198 n n 
CMB HMBA HEM sing 199 n n 
CMB HMBB HEM sing 200 n n 
CAB CBB HEM doub 201 n n 
CAB HAB HEM sing 202 n n 
CBB HBB HEM sing 203 n n 
CBB HBBA HEM sing 204 n n 
C1C C2C HEM sing 205 n y 
C1C NC HEM sing 206 n y 
C2C C3C HEM doub 207 n y 
C2C CMC HEM sing 208 n n 
C3C C4C HEM sing 209 n y 
C3C CAC HEM sing 210 n n 
C4C NC HEM sing 211 n y 
CMC HMC HEM sing 212 n n 
CMC HMCA HEM sing 213 n n 
CMC HMCB HEM sing 214 n n 
CAC CBC HEM doub 215 n n 
CAC HAC HEM sing 216 n n 
CBC HBC HEM sing 217 n n 
CBC HBCA HEM sing 218 n n 
C1D C2D HEM sing 219 n n 
C1D ND HEM doub 220 n n 
C2D C3D HEM doub 221 n n 
C2D CMD HEM sing 222 n n 
C3D C4D HEM sing 223 n n 
C3D CAD HEM sing 224 n n 
C4D ND HEM sing 225 n n 
CMD HMD HEM sing 226 n n 
CMD HMDA HEM sing 227 n n 
CMD HMDB HEM sing 228 n n 
CAD CBD HEM sing 229 n n 
CAD HAD HEM sing 230 n n 
CAD HADA HEM sing 231 n n 
CBD CGD HEM sing 232 n n 
CBD HBD HEM sing 233 n n 
CBD HBDA HEM sing 234 n n 
CGD O1D HEM doub 235 n n 
CGD O2D HEM sing 236 n n 
O2A H2A HEM sing 237 n n 
O2D H2D HEM sing 238 n n 
FE NA HEM sing 239 n n 
FE NB HEM sing 240 n n 
FE NC HEM sing 241 n n 
FE ND HEM sing 242 n n 
#
_atom_sites.entry_id                     3T3S 
_atom_sites.fract_transf_matrix[1][1]    0.013986 
_atom_sites.fract_transf_matrix[1][2]    0.000877 
_atom_sites.fract_transf_matrix[1][3]    0.003154 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008359 
_atom_sites.fract_transf_matrix[2][3]    0.001782 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006743 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 HEM A 1 500 500 HEM HEM . 
J 3 9PL A 1 1 1 9PL 9PL . 
K 2 HEM B 1 500 500 HEM HEM . 
L 3 9PL B 1 1 1 9PL 9PL . 
M 2 HEM C 1 500 500 HEM HEM . 
N 3 9PL C 1 1 1 9PL 9PL . 
O 2 HEM D 1 500 500 HEM HEM . 
P 3 9PL D 1 1 1 9PL 9PL . 
Q 2 HEM E 1 500 500 HEM HEM . 
R 3 9PL E 1 1 1 9PL 9PL . 
S 2 HEM F 1 500 500 HEM HEM . 
T 3 9PL F 1 1 1 9PL 9PL . 
U 2 HEM G 1 500 500 HEM HEM . 
V 2 HEM H 1 500 500 HEM HEM . 
W 4 HOH A 1 2 2 HOH HOH . 
W 4 HOH A 2 3 3 HOH HOH . 
W 4 HOH A 3 7 7 HOH HOH . 
W 4 HOH A 4 10 10 HOH HOH . 
W 4 HOH A 5 20 20 HOH HOH . 
X 4 HOH B 1 4 4 HOH HOH . 
X 4 HOH B 2 11 11 HOH HOH . 
X 4 HOH B 3 19 19 HOH HOH . 
X 4 HOH B 4 499 26 HOH HOH . 
X 4 HOH B 5 501 29 HOH HOH . 
Y 4 HOH C 1 12 12 HOH HOH . 
Y 4 HOH C 2 15 15 HOH HOH . 
Y 4 HOH C 3 22 22 HOH HOH . 
Y 4 HOH C 4 499 31 HOH HOH . 
Z 4 HOH D 1 8 8 HOH HOH . 
Z 4 HOH D 2 13 13 HOH HOH . 
Z 4 HOH D 3 499 27 HOH HOH . 
Z 4 HOH D 4 501 28 HOH HOH . 
Z 4 HOH D 5 502 33 HOH HOH . 
AA 4 HOH E 1 5 5 HOH HOH . 
AA 4 HOH E 2 9 9 HOH HOH . 
AA 4 HOH E 3 17 17 HOH HOH . 
AA 4 HOH E 4 18 18 HOH HOH . 
AA 4 HOH E 5 21 21 HOH HOH . 
AA 4 HOH E 6 499 23 HOH HOH . 
AA 4 HOH E 7 501 24 HOH HOH . 
AA 4 HOH E 8 502 30 HOH HOH . 
BA 4 HOH G 1 1 1 HOH HOH . 
CA 4 HOH H 1 14 14 HOH HOH . 
CA 4 HOH H 2 16 16 HOH HOH . 
CA 4 HOH H 3 499 25 HOH HOH . 
CA 4 HOH H 4 501 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 2 11.697 -13.679 10.519 1 34.92 ? CHA HEM 500 B 1 
HETATM 2 C CHB HEM . . . K 2 12.555 -18.393 10.401 1 33.37 ? CHB HEM 500 B 1 
HETATM 3 C CHC HEM . . . K 2 10.738 -18.693 14.85 1 34.71 ? CHC HEM 500 B 1 
HETATM 4 C CHD HEM . . . K 2 9.577 -13.937 14.956 1 33.75 ? CHD HEM 500 B 1 
HETATM 5 C C1A HEM . . . K 2 12.082 -14.901 10.083 1 35.22 ? C1A HEM 500 B 1 
HETATM 6 C C2A HEM . . . K 2 12.708 -15.182 8.821 1 34.9 ? C2A HEM 500 B 1 
HETATM 7 C C3A HEM . . . K 2 12.946 -16.518 8.777 1 34.94 ? C3A HEM 500 B 1 
HETATM 8 C C4A HEM . . . K 2 12.494 -17.084 10.024 1 34.63 ? C4A HEM 500 B 1 
HETATM 9 C CMA HEM . . . K 2 13.604 -17.363 7.663 1 35.05 ? CMA HEM 500 B 1 
HETATM 10 C CAA HEM . . . K 2 12.991 -14.101 7.754 1 35.96 ? CAA HEM 500 B 1 
HETATM 11 C CBA HEM . . . K 2 14.234 -13.273 8.047 1 37.79 ? CBA HEM 500 B 1 
HETATM 12 C CGA HEM . . . K 2 14.495 -12.355 6.873 1 38.86 ? CGA HEM 500 B 1 
HETATM 13 O O1A HEM . . . K 2 15.477 -12.576 6.102 1 40.09 ? O1A HEM 500 B 1 
HETATM 14 O O2A HEM . . . K 2 13.696 -11.394 6.705 1 38.4 ? O2A HEM 500 B 1 
HETATM 15 C C1B HEM . . . K 2 12.127 -18.871 11.612 1 34.37 ? C1B HEM 500 B 1 
HETATM 16 C C2B HEM . . . K 2 12.186 -20.261 11.97 1 32.81 ? C2B HEM 500 B 1 
HETATM 17 C C3B HEM . . . K 2 11.684 -20.387 13.209 1 33.1 ? C3B HEM 500 B 1 
HETATM 18 C C4B HEM . . . K 2 11.292 -19.05 13.663 1 33.55 ? C4B HEM 500 B 1 
HETATM 19 C CMB HEM . . . K 2 12.743 -21.362 11.053 1 32.67 ? CMB HEM 500 B 1 
HETATM 20 C CAB HEM . . . K 2 11.54 -21.72 14.005 1 31.61 ? CAB HEM 500 B 1 
HETATM 21 C CBB HEM . . . K 2 12.361 -22.781 13.942 1 29.26 ? CBB HEM 500 B 1 
HETATM 22 C C1C HEM . . . K 2 10.319 -17.428 15.257 1 37.83 ? C1C HEM 500 B 1 
HETATM 23 C C2C HEM . . . K 2 9.859 -17.127 16.586 1 35.66 ? C2C HEM 500 B 1 
HETATM 24 C C3C HEM . . . K 2 9.52 -15.841 16.672 1 35.57 ? C3C HEM 500 B 1 
HETATM 25 C C4C HEM . . . K 2 9.746 -15.239 15.361 1 35.54 ? C4C HEM 500 B 1 
HETATM 26 C CMC HEM . . . K 2 9.784 -18.214 17.674 1 38.46 ? CMC HEM 500 B 1 
HETATM 27 C CAC HEM . . . K 2 8.935 -15.183 17.957 1 37.81 ? CAC HEM 500 B 1 
HETATM 28 C CBC HEM . . . K 2 9.601 -14.404 18.822 1 39.24 ? CBC HEM 500 B 1 
HETATM 29 C C1D HEM . . . K 2 10.012 -13.428 13.737 1 34.92 ? C1D HEM 500 B 1 
HETATM 30 C C2D HEM . . . K 2 9.774 -12.09 13.169 1 33.66 ? C2D HEM 500 B 1 
HETATM 31 C C3D HEM . . . K 2 10.467 -12.071 11.811 1 34.5 ? C3D HEM 500 B 1 
HETATM 32 C C4D HEM . . . K 2 11.021 -13.371 11.659 1 35.25 ? C4D HEM 500 B 1 
HETATM 33 C CMD HEM . . . K 2 9.008 -10.886 13.738 1 31.87 ? CMD HEM 500 B 1 
HETATM 34 C CAD HEM . . . K 2 10.544 -10.946 10.76 1 35.38 ? CAD HEM 500 B 1 
HETATM 35 C CBD HEM . . . K 2 11.952 -10.403 10.673 1 34.51 ? CBD HEM 500 B 1 
HETATM 36 C CGD HEM . . . K 2 11.894 -8.923 10.505 1 33.51 ? CGD HEM 500 B 1 
HETATM 37 O O1D HEM . . . K 2 12.127 -8.265 11.526 1 36.43 ? O1D HEM 500 B 1 
HETATM 38 O O2D HEM . . . K 2 11.618 -8.404 9.405 1 31.74 ? O2D HEM 500 B 1 
HETATM 39 N NA HEM . . . K 2 11.965 -16.072 10.8 1 36.75 ? NA HEM 500 B 1 
HETATM 40 N NB HEM . . . K 2 11.569 -18.145 12.672 1 36.1 ? NB HEM 500 B 1 
HETATM 41 N NC HEM . . . K 2 10.232 -16.239 14.519 1 38.69 ? NC HEM 500 B 1 
HETATM 42 N ND HEM . . . K 2 10.761 -14.154 12.797 1 36.15 ? ND HEM 500 B 1 
HETATM 43 FE FE HEM . . . K 2 11.136 -16.093 12.635 1 36.87 ? FE HEM 500 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#