data_3T3S # _model_server_result.job_id jhBrfXJvcfi74zIpu-uiYw _model_server_result.datetime_utc '2024-11-24 01:12:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":500}' # _entry.id 3T3S # _exptl.entry_id 3T3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 101.01 _cell.angle_beta 101.72 _cell.angle_gamma 93.59 _cell.entry_id 3T3S _cell.length_a 71.501 _cell.length_b 119.862 _cell.length_c 154.871 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J,W 1 1 B,K,L,X 2 1 C,M,N,Y 3 1 D,O,P,Z 4 1 E,Q,R,AA 5 1 F,S,T 6 1 G,U,BA 7 1 H,V,CA 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 J N3 9PL . A 9PL 1 1_555 I FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc2 A SG CYS 417 A CYS 439 1_555 I FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc3 L N3 9PL . B 9PL 1 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc4 B SG CYS 417 B CYS 439 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 N N3 9PL . C 9PL 1 1_555 M FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc6 C SG CYS 417 C CYS 439 1_555 M FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 P N3 9PL . D 9PL 1 1_555 O FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc8 D SG CYS 417 D CYS 439 1_555 O FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc9 R N3 9PL . E 9PL 1 1_555 Q FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc10 E SG CYS 417 E CYS 439 1_555 Q FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc11 T N3 9PL . F 9PL 1 1_555 S FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc12 F SG CYS 417 F CYS 439 1_555 S FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc13 G SG CYS 417 G CYS 439 1_555 U FE HEM . G HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc14 H SG CYS 417 H CYS 439 1_555 V FE HEM . H HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 161 n n CHA C4D HEM doub 162 n n CHA HHA HEM sing 163 n n CHB C4A HEM sing 164 n n CHB C1B HEM doub 165 n n CHB HHB HEM sing 166 n n CHC C4B HEM sing 167 n n CHC C1C HEM doub 168 n n CHC HHC HEM sing 169 n n CHD C4C HEM doub 170 n n CHD C1D HEM sing 171 n n CHD HHD HEM sing 172 n n C1A C2A HEM doub 173 n y C1A NA HEM sing 174 n y C2A C3A HEM sing 175 n y C2A CAA HEM sing 176 n n C3A C4A HEM doub 177 n y C3A CMA HEM sing 178 n n C4A NA HEM sing 179 n y CMA HMA HEM sing 180 n n CMA HMAA HEM sing 181 n n CMA HMAB HEM sing 182 n n CAA CBA HEM sing 183 n n CAA HAA HEM sing 184 n n CAA HAAA HEM sing 185 n n CBA CGA HEM sing 186 n n CBA HBA HEM sing 187 n n CBA HBAA HEM sing 188 n n CGA O1A HEM doub 189 n n CGA O2A HEM sing 190 n n C1B C2B HEM sing 191 n n C1B NB HEM sing 192 n n C2B C3B HEM doub 193 n n C2B CMB HEM sing 194 n n C3B C4B HEM sing 195 n n C3B CAB HEM sing 196 n n C4B NB HEM doub 197 n n CMB HMB HEM sing 198 n n CMB HMBA HEM sing 199 n n CMB HMBB HEM sing 200 n n CAB CBB HEM doub 201 n n CAB HAB HEM sing 202 n n CBB HBB HEM sing 203 n n CBB HBBA HEM sing 204 n n C1C C2C HEM sing 205 n y C1C NC HEM sing 206 n y C2C C3C HEM doub 207 n y C2C CMC HEM sing 208 n n C3C C4C HEM sing 209 n y C3C CAC HEM sing 210 n n C4C NC HEM sing 211 n y CMC HMC HEM sing 212 n n CMC HMCA HEM sing 213 n n CMC HMCB HEM sing 214 n n CAC CBC HEM doub 215 n n CAC HAC HEM sing 216 n n CBC HBC HEM sing 217 n n CBC HBCA HEM sing 218 n n C1D C2D HEM sing 219 n n C1D ND HEM doub 220 n n C2D C3D HEM doub 221 n n C2D CMD HEM sing 222 n n C3D C4D HEM sing 223 n n C3D CAD HEM sing 224 n n C4D ND HEM sing 225 n n CMD HMD HEM sing 226 n n CMD HMDA HEM sing 227 n n CMD HMDB HEM sing 228 n n CAD CBD HEM sing 229 n n CAD HAD HEM sing 230 n n CAD HADA HEM sing 231 n n CBD CGD HEM sing 232 n n CBD HBD HEM sing 233 n n CBD HBDA HEM sing 234 n n CGD O1D HEM doub 235 n n CGD O2D HEM sing 236 n n O2A H2A HEM sing 237 n n O2D H2D HEM sing 238 n n FE NA HEM sing 239 n n FE NB HEM sing 240 n n FE NC HEM sing 241 n n FE ND HEM sing 242 n n # _atom_sites.entry_id 3T3S _atom_sites.fract_transf_matrix[1][1] 0.013986 _atom_sites.fract_transf_matrix[1][2] 0.000877 _atom_sites.fract_transf_matrix[1][3] 0.003154 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008359 _atom_sites.fract_transf_matrix[2][3] 0.001782 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HEM A 1 500 500 HEM HEM . J 3 9PL A 1 1 1 9PL 9PL . K 2 HEM B 1 500 500 HEM HEM . L 3 9PL B 1 1 1 9PL 9PL . M 2 HEM C 1 500 500 HEM HEM . N 3 9PL C 1 1 1 9PL 9PL . O 2 HEM D 1 500 500 HEM HEM . P 3 9PL D 1 1 1 9PL 9PL . Q 2 HEM E 1 500 500 HEM HEM . R 3 9PL E 1 1 1 9PL 9PL . S 2 HEM F 1 500 500 HEM HEM . T 3 9PL F 1 1 1 9PL 9PL . U 2 HEM G 1 500 500 HEM HEM . V 2 HEM H 1 500 500 HEM HEM . W 4 HOH A 1 2 2 HOH HOH . W 4 HOH A 2 3 3 HOH HOH . W 4 HOH A 3 7 7 HOH HOH . W 4 HOH A 4 10 10 HOH HOH . W 4 HOH A 5 20 20 HOH HOH . X 4 HOH B 1 4 4 HOH HOH . X 4 HOH B 2 11 11 HOH HOH . X 4 HOH B 3 19 19 HOH HOH . X 4 HOH B 4 499 26 HOH HOH . X 4 HOH B 5 501 29 HOH HOH . Y 4 HOH C 1 12 12 HOH HOH . Y 4 HOH C 2 15 15 HOH HOH . Y 4 HOH C 3 22 22 HOH HOH . Y 4 HOH C 4 499 31 HOH HOH . Z 4 HOH D 1 8 8 HOH HOH . Z 4 HOH D 2 13 13 HOH HOH . Z 4 HOH D 3 499 27 HOH HOH . Z 4 HOH D 4 501 28 HOH HOH . Z 4 HOH D 5 502 33 HOH HOH . AA 4 HOH E 1 5 5 HOH HOH . AA 4 HOH E 2 9 9 HOH HOH . AA 4 HOH E 3 17 17 HOH HOH . AA 4 HOH E 4 18 18 HOH HOH . AA 4 HOH E 5 21 21 HOH HOH . AA 4 HOH E 6 499 23 HOH HOH . AA 4 HOH E 7 501 24 HOH HOH . AA 4 HOH E 8 502 30 HOH HOH . BA 4 HOH G 1 1 1 HOH HOH . CA 4 HOH H 1 14 14 HOH HOH . CA 4 HOH H 2 16 16 HOH HOH . CA 4 HOH H 3 499 25 HOH HOH . CA 4 HOH H 4 501 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . O 2 30.552 -59.811 -61.417 1 40.32 ? CHA HEM 500 D 1 HETATM 2 C CHB HEM . . . O 2 31.331 -64.504 -62.108 1 39.65 ? CHB HEM 500 D 1 HETATM 3 C CHC HEM . . . O 2 29.702 -65.724 -57.717 1 37.25 ? CHC HEM 500 D 1 HETATM 4 C CHD HEM . . . O 2 28.458 -61.077 -57.174 1 37.97 ? CHD HEM 500 D 1 HETATM 5 C C1A HEM . . . O 2 30.925 -60.989 -62.021 1 39.45 ? C1A HEM 500 D 1 HETATM 6 C C2A HEM . . . O 2 31.498 -61.199 -63.352 1 38.32 ? C2A HEM 500 D 1 HETATM 7 C C3A HEM . . . O 2 31.695 -62.507 -63.512 1 38.48 ? C3A HEM 500 D 1 HETATM 8 C C4A HEM . . . O 2 31.272 -63.16 -62.309 1 38.78 ? C4A HEM 500 D 1 HETATM 9 C CMA HEM . . . O 2 32.277 -63.201 -64.763 1 39.29 ? CMA HEM 500 D 1 HETATM 10 C CAA HEM . . . O 2 31.832 -60.18 -64.453 1 35.92 ? CAA HEM 500 D 1 HETATM 11 C CBA HEM . . . O 2 31.785 -58.787 -63.868 1 36.84 ? CBA HEM 500 D 1 HETATM 12 C CGA HEM . . . O 2 32.586 -57.88 -64.756 1 38.16 ? CGA HEM 500 D 1 HETATM 13 O O1A HEM . . . O 2 33.658 -58.297 -65.3 1 37.34 ? O1A HEM 500 D 1 HETATM 14 O O2A HEM . . . O 2 32.107 -56.725 -64.905 1 39.27 ? O2A HEM 500 D 1 HETATM 15 C C1B HEM . . . O 2 30.933 -65.236 -61.011 1 39.1 ? C1B HEM 500 D 1 HETATM 16 C C2B HEM . . . O 2 30.952 -66.683 -60.972 1 35.89 ? C2B HEM 500 D 1 HETATM 17 C C3B HEM . . . O 2 30.509 -67.039 -59.754 1 36.82 ? C3B HEM 500 D 1 HETATM 18 C C4B HEM . . . O 2 30.166 -65.823 -59.004 1 39.16 ? C4B HEM 500 D 1 HETATM 19 C CMB HEM . . . O 2 31.421 -67.58 -62.142 1 34.59 ? CMB HEM 500 D 1 HETATM 20 C CAB HEM . . . O 2 30.336 -68.459 -59.185 1 31.24 ? CAB HEM 500 D 1 HETATM 21 C CBB HEM . . . O 2 31.047 -69.467 -59.714 1 28.21 ? CBB HEM 500 D 1 HETATM 22 C C1C HEM . . . O 2 29.28 -64.54 -57.179 1 38.3 ? C1C HEM 500 D 1 HETATM 23 C C2C HEM . . . O 2 28.84 -64.359 -55.813 1 37.75 ? C2C HEM 500 D 1 HETATM 24 C C3C HEM . . . O 2 28.507 -63.078 -55.666 1 37.22 ? C3C HEM 500 D 1 HETATM 25 C C4C HEM . . . O 2 28.714 -62.406 -56.938 1 38.1 ? C4C HEM 500 D 1 HETATM 26 C CMC HEM . . . O 2 28.742 -65.46 -54.713 1 37.53 ? CMC HEM 500 D 1 HETATM 27 C CAC HEM . . . O 2 27.908 -62.446 -54.371 1 36.42 ? CAC HEM 500 D 1 HETATM 28 C CBC HEM . . . O 2 28.611 -61.909 -53.372 1 36.3 ? CBC HEM 500 D 1 HETATM 29 C C1D HEM . . . O 2 28.91 -60.304 -58.214 1 39.08 ? C1D HEM 500 D 1 HETATM 30 C C2D HEM . . . O 2 28.781 -58.878 -58.3 1 38.93 ? C2D HEM 500 D 1 HETATM 31 C C3D HEM . . . O 2 29.434 -58.461 -59.61 1 40.4 ? C3D HEM 500 D 1 HETATM 32 C C4D HEM . . . O 2 29.894 -59.704 -60.203 1 40.61 ? C4D HEM 500 D 1 HETATM 33 C CMD HEM . . . O 2 28.115 -57.955 -57.269 1 39.2 ? CMD HEM 500 D 1 HETATM 34 C CAD HEM . . . O 2 29.517 -57.013 -60.18 1 41.45 ? CAD HEM 500 D 1 HETATM 35 C CBD HEM . . . O 2 30.736 -56.166 -59.741 1 42.23 ? CBD HEM 500 D 1 HETATM 36 C CGD HEM . . . O 2 30.696 -54.796 -60.403 1 42.6 ? CGD HEM 500 D 1 HETATM 37 O O1D HEM . . . O 2 31.357 -53.836 -59.908 1 44.16 ? O1D HEM 500 D 1 HETATM 38 O O2D HEM . . . O 2 30.018 -54.63 -61.45 1 42.56 ? O2D HEM 500 D 1 HETATM 39 N NA HEM . . . O 2 30.825 -62.22 -61.405 1 39.55 ? NA HEM 500 D 1 HETATM 40 N NB HEM . . . O 2 30.453 -64.726 -59.799 1 40.52 ? NB HEM 500 D 1 HETATM 41 N NC HEM . . . O 2 29.23 -63.321 -57.848 1 39.5 ? NC HEM 500 D 1 HETATM 42 N ND HEM . . . O 2 29.596 -60.761 -59.337 1 40.28 ? ND HEM 500 D 1 HETATM 43 FE FE HEM . . . O 2 30.003 -62.76 -59.703 1 39.85 ? FE HEM 500 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #