data_3T3U # _model_server_result.job_id MNEXGcPDe8cyuqzquLzOlQ _model_server_result.datetime_utc '2024-11-15 20:20:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 3T3U # _exptl.entry_id 3T3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.466 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(6-methoxynaphthalen-2-yl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.04 _cell.angle_gamma 90 _cell.entry_id 3T3U _cell.length_a 47.626 _cell.length_b 72.664 _cell.length_c 66.104 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H24 N6 O' _chem_comp.formula_weight 388.466 _chem_comp.id BK6 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(6-methoxynaphthalen-2-yl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RM-1-130 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 BK6 doub 70 n y C2 N1 BK6 sing 71 n y N3 C2 BK6 doub 72 n y N3 C4 BK6 sing 73 n y C4 NBC BK6 sing 74 n y C4 C5 BK6 doub 75 n y C5 C6 BK6 sing 76 n y C5 CAW BK6 sing 77 n y C6 NAB BK6 sing 78 n n CAA OAS BK6 sing 79 n n CAD CAF BK6 doub 80 n y CAD CAU BK6 sing 81 n y CAE CAC BK6 doub 82 n y CAF CAX BK6 sing 83 n y CAH CAT BK6 doub 84 n y CAI CAY BK6 sing 85 n y CAJ CAL BK6 sing 86 n n CAK NAR BK6 sing 87 n n CAK CAM BK6 sing 88 n n CAL CBB BK6 sing 89 n n CAM CBB BK6 sing 90 n n CAN NBC BK6 sing 91 n n NAQ CAW BK6 doub 92 n y NAR CAJ BK6 sing 93 n n CAT CAC BK6 sing 94 n y CAT OAS BK6 sing 95 n n CAU CAI BK6 doub 96 n y CAW CAU BK6 sing 97 n n CAX CAH BK6 sing 98 n y CAX CAY BK6 doub 99 n y CAY CAE BK6 sing 100 n y CBB CAN BK6 sing 101 n n NBC NAQ BK6 sing 102 n y C2 H2 BK6 sing 103 n n CAA HAA BK6 sing 104 n n CAA HAAA BK6 sing 105 n n CAA HAAB BK6 sing 106 n n NAB HNAB BK6 sing 107 n n NAB HNAA BK6 sing 108 n n CAC HAC BK6 sing 109 n n CAD HAD BK6 sing 110 n n CAE HAE BK6 sing 111 n n CAF HAF BK6 sing 112 n n CAH HAH BK6 sing 113 n n CAI HAI BK6 sing 114 n n CAJ HAJ BK6 sing 115 n n CAJ HAJA BK6 sing 116 n n CAK HAK BK6 sing 117 n n CAK HAKA BK6 sing 118 n n CAL HAL BK6 sing 119 n n CAL HALA BK6 sing 120 n n CAM HAM BK6 sing 121 n n CAM HAMA BK6 sing 122 n n CAN HAN BK6 sing 123 n n CAN HANA BK6 sing 124 n n NAR HNAR BK6 sing 125 n n CBB HBB BK6 sing 126 n n # _atom_sites.entry_id 3T3U _atom_sites.fract_transf_matrix[1][1] 0.020997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003341 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BK6 A 1 701 701 BK6 BK6 . C 3 DMS A 1 711 711 DMS DMS . D 4 EDO A 1 712 712 EDO EDO . E 4 EDO A 1 713 713 EDO EDO . F 4 EDO A 1 714 714 EDO EDO . G 5 HOH A 1 801 801 HOH HOH . G 5 HOH A 2 802 802 HOH HOH . G 5 HOH A 3 803 803 HOH HOH . G 5 HOH A 4 804 804 HOH HOH . G 5 HOH A 5 805 805 HOH HOH . G 5 HOH A 6 806 806 HOH HOH . G 5 HOH A 7 807 807 HOH HOH . G 5 HOH A 8 808 808 HOH HOH . G 5 HOH A 9 809 809 HOH HOH . G 5 HOH A 10 810 810 HOH HOH . G 5 HOH A 11 811 811 HOH HOH . G 5 HOH A 12 812 812 HOH HOH . G 5 HOH A 13 813 813 HOH HOH . G 5 HOH A 14 814 814 HOH HOH . G 5 HOH A 15 815 815 HOH HOH . G 5 HOH A 16 816 816 HOH HOH . G 5 HOH A 17 817 817 HOH HOH . G 5 HOH A 18 818 818 HOH HOH . G 5 HOH A 19 819 819 HOH HOH . G 5 HOH A 20 820 820 HOH HOH . G 5 HOH A 21 821 821 HOH HOH . G 5 HOH A 22 822 822 HOH HOH . G 5 HOH A 23 823 823 HOH HOH . G 5 HOH A 24 824 824 HOH HOH . G 5 HOH A 25 825 825 HOH HOH . G 5 HOH A 26 826 826 HOH HOH . G 5 HOH A 27 827 827 HOH HOH . G 5 HOH A 28 828 828 HOH HOH . G 5 HOH A 29 829 829 HOH HOH . G 5 HOH A 30 830 830 HOH HOH . G 5 HOH A 31 831 831 HOH HOH . G 5 HOH A 32 832 832 HOH HOH . G 5 HOH A 33 833 833 HOH HOH . G 5 HOH A 34 834 834 HOH HOH . G 5 HOH A 35 835 835 HOH HOH . G 5 HOH A 36 836 836 HOH HOH . G 5 HOH A 37 837 837 HOH HOH . G 5 HOH A 38 838 838 HOH HOH . G 5 HOH A 39 839 839 HOH HOH . G 5 HOH A 40 840 840 HOH HOH . G 5 HOH A 41 841 841 HOH HOH . G 5 HOH A 42 842 842 HOH HOH . G 5 HOH A 43 843 843 HOH HOH . G 5 HOH A 44 844 844 HOH HOH . G 5 HOH A 45 845 845 HOH HOH . G 5 HOH A 46 846 846 HOH HOH . G 5 HOH A 47 847 847 HOH HOH . G 5 HOH A 48 848 848 HOH HOH . G 5 HOH A 49 849 849 HOH HOH . G 5 HOH A 50 850 850 HOH HOH . G 5 HOH A 51 851 851 HOH HOH . G 5 HOH A 52 852 852 HOH HOH . G 5 HOH A 53 853 853 HOH HOH . G 5 HOH A 54 854 854 HOH HOH . G 5 HOH A 55 855 855 HOH HOH . G 5 HOH A 56 856 856 HOH HOH . G 5 HOH A 57 857 857 HOH HOH . G 5 HOH A 58 858 858 HOH HOH . G 5 HOH A 59 859 859 HOH HOH . G 5 HOH A 60 860 860 HOH HOH . G 5 HOH A 61 861 861 HOH HOH . G 5 HOH A 62 862 862 HOH HOH . G 5 HOH A 63 863 863 HOH HOH . G 5 HOH A 64 864 864 HOH HOH . G 5 HOH A 65 865 865 HOH HOH . G 5 HOH A 66 866 866 HOH HOH . G 5 HOH A 67 867 867 HOH HOH . G 5 HOH A 68 868 868 HOH HOH . G 5 HOH A 69 869 869 HOH HOH . G 5 HOH A 70 870 870 HOH HOH . G 5 HOH A 71 871 871 HOH HOH . G 5 HOH A 72 872 872 HOH HOH . G 5 HOH A 73 873 873 HOH HOH . G 5 HOH A 74 874 874 HOH HOH . G 5 HOH A 75 875 875 HOH HOH . G 5 HOH A 76 876 876 HOH HOH . G 5 HOH A 77 877 877 HOH HOH . G 5 HOH A 78 878 878 HOH HOH . G 5 HOH A 79 879 879 HOH HOH . G 5 HOH A 80 880 880 HOH HOH . G 5 HOH A 81 881 881 HOH HOH . G 5 HOH A 82 882 882 HOH HOH . G 5 HOH A 83 883 883 HOH HOH . G 5 HOH A 84 884 884 HOH HOH . G 5 HOH A 85 885 885 HOH HOH . G 5 HOH A 86 886 886 HOH HOH . G 5 HOH A 87 887 887 HOH HOH . G 5 HOH A 88 888 888 HOH HOH . G 5 HOH A 89 889 889 HOH HOH . G 5 HOH A 90 890 890 HOH HOH . G 5 HOH A 91 891 891 HOH HOH . G 5 HOH A 92 892 892 HOH HOH . G 5 HOH A 93 893 893 HOH HOH . G 5 HOH A 94 894 894 HOH HOH . G 5 HOH A 95 895 895 HOH HOH . G 5 HOH A 96 896 896 HOH HOH . G 5 HOH A 97 897 897 HOH HOH . G 5 HOH A 98 898 898 HOH HOH . G 5 HOH A 99 899 899 HOH HOH . G 5 HOH A 100 900 900 HOH HOH . G 5 HOH A 101 901 901 HOH HOH . G 5 HOH A 102 902 902 HOH HOH . G 5 HOH A 103 903 903 HOH HOH . G 5 HOH A 104 904 904 HOH HOH . G 5 HOH A 105 905 905 HOH HOH . G 5 HOH A 106 906 906 HOH HOH . G 5 HOH A 107 907 907 HOH HOH . G 5 HOH A 108 908 908 HOH HOH . G 5 HOH A 109 909 909 HOH HOH . G 5 HOH A 110 910 910 HOH HOH . G 5 HOH A 111 911 911 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BK6 . . . B 2 21.561 12.482 63.809 1 27.35 ? N1 BK6 701 A 1 HETATM 2 C C2 BK6 . . . B 2 22.725 13.114 63.614 1 30.69 ? C2 BK6 701 A 1 HETATM 3 N N3 BK6 . . . B 2 22.786 14.442 63.58 1 28.49 ? N3 BK6 701 A 1 HETATM 4 C C4 BK6 . . . B 2 21.665 15.173 63.727 1 28.29 ? C4 BK6 701 A 1 HETATM 5 C C5 BK6 . . . B 2 20.433 14.558 63.943 1 28.2 ? C5 BK6 701 A 1 HETATM 6 C C6 BK6 . . . B 2 20.404 13.154 63.987 1 27.44 ? C6 BK6 701 A 1 HETATM 7 C CAA BK6 . . . B 2 11.318 15.312 65.642 1 34.43 ? CAA BK6 701 A 1 HETATM 8 N NAB BK6 . . . B 2 19.278 12.45 64.182 1 27.64 ? NAB BK6 701 A 1 HETATM 9 C CAC BK6 . . . B 2 14.459 14.008 67.067 1 26.12 ? CAC BK6 701 A 1 HETATM 10 C CAD BK6 . . . B 2 17.27 16.319 63.559 1 27.66 ? CAD BK6 701 A 1 HETATM 11 C CAE BK6 . . . B 2 15.816 14.071 66.771 1 24.86 ? CAE BK6 701 A 1 HETATM 12 C CAF BK6 . . . B 2 15.897 16.279 63.846 1 27.76 ? CAF BK6 701 A 1 HETATM 13 C CAH BK6 . . . B 2 14.036 15.485 65.211 1 26.54 ? CAH BK6 701 A 1 HETATM 14 C CAI BK6 . . . B 2 17.667 14.843 65.416 1 27.07 ? CAI BK6 701 A 1 HETATM 15 C CAJ BK6 . . . B 2 24.433 19.018 60.521 1 36.83 ? CAJ BK6 701 A 1 HETATM 16 C CAK BK6 . . . B 2 22.218 18.493 59.724 1 36.6 ? CAK BK6 701 A 1 HETATM 17 C CAL BK6 . . . B 2 24.046 18.743 61.983 1 38.5 ? CAL BK6 701 A 1 HETATM 18 C CAM BK6 . . . B 2 21.805 17.981 61.128 1 39.81 ? CAM BK6 701 A 1 HETATM 19 C CAN BK6 . . . B 2 22.499 17.499 63.542 1 34.33 ? CAN BK6 701 A 1 HETATM 20 N NAQ BK6 . . . B 2 20.248 16.759 63.946 1 30.37 ? NAQ BK6 701 A 1 HETATM 21 N NAR BK6 . . . B 2 23.244 19.549 59.83 1 37.16 ? NAR BK6 701 A 1 HETATM 22 O OAS BK6 . . . B 2 12.227 14.654 66.574 1 32.82 ? OAS BK6 701 A 1 HETATM 23 C CAT BK6 . . . B 2 13.56 14.726 66.279 1 28.4 ? CAT BK6 701 A 1 HETATM 24 C CAU BK6 . . . B 2 18.167 15.572 64.327 1 27.14 ? CAU BK6 701 A 1 HETATM 25 C CAW BK6 . . . B 2 19.536 15.632 64.073 1 28.25 ? CAW BK6 701 A 1 HETATM 26 C CAX BK6 . . . B 2 15.405 15.525 64.921 1 26.93 ? CAX BK6 701 A 1 HETATM 27 C CAY BK6 . . . B 2 16.298 14.811 65.707 1 24.85 ? CAY BK6 701 A 1 HETATM 28 C CBB BK6 . . . B 2 22.987 17.632 62.054 1 35.14 ? CBB BK6 701 A 1 HETATM 29 N NBC BK6 . . . B 2 21.441 16.482 63.734 1 30.4 ? NBC BK6 701 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #