data_3T3V
#
_model_server_result.job_id            fHZdWWhPNX-WCH_4IP12hg 
_model_server_result.datetime_utc      '2024-10-19 00:46:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t3v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    3T3V 
#
_exptl.entry_id    3T3V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              333.387 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(6-methoxynaphthalen-2-yl)-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.47 
_cell.angle_gamma         90 
_cell.entry_id            3T3V 
_cell.length_a            47.973 
_cell.length_b            71.934 
_cell.length_c            66.621 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T3V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H19 N5 O' 
_chem_comp.formula_weight    333.387 
_chem_comp.id                BK4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(6-methoxynaphthalen-2-yl)-1-(propan-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     RM-1-87 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C6 BK4 doub 70 n y 
C2 N1 BK4 sing 71 n y 
C2 H2 BK4 sing 72 n n 
N3 C2 BK4 doub 73 n y 
N3 C4 BK4 sing 74 n y 
C4 C5 BK4 doub 75 n y 
C5 C6 BK4 sing 76 n y 
C5 CAS BK4 sing 77 n y 
C6 NAD BK4 sing 78 n n 
CAA OAO BK4 sing 79 n n 
CAA HAA BK4 sing 80 n n 
CAA HAAA BK4 sing 81 n n 
CAA HAAB BK4 sing 82 n n 
CAB HAB BK4 sing 83 n n 
CAB HABA BK4 sing 84 n n 
CAB HABB BK4 sing 85 n n 
CAC CAX BK4 sing 86 n n 
CAC HAC BK4 sing 87 n n 
CAC HACA BK4 sing 88 n n 
CAC HACB BK4 sing 89 n n 
NAD HNAD BK4 sing 90 n n 
NAD HNAA BK4 sing 91 n n 
CAF HAF BK4 sing 92 n n 
CAG CAI BK4 doub 93 n y 
CAG CAQ BK4 sing 94 n y 
CAG HAG BK4 sing 95 n n 
CAH CAF BK4 doub 96 n y 
CAH HAH BK4 sing 97 n n 
CAI CAT BK4 sing 98 n y 
CAI HAI BK4 sing 99 n n 
CAJ CAP BK4 doub 100 n y 
CAJ HAJ BK4 sing 101 n n 
CAK CAU BK4 sing 102 n y 
CAK HAK BK4 sing 103 n n 
NAN CAS BK4 doub 104 n y 
CAP CAF BK4 sing 105 n y 
CAP OAO BK4 sing 106 n n 
CAQ CAK BK4 doub 107 n y 
CAS CAQ BK4 sing 108 n n 
CAT CAJ BK4 sing 109 n y 
CAT CAU BK4 doub 110 n y 
CAU CAH BK4 sing 111 n y 
CAX CAB BK4 sing 112 n n 
CAX NAY BK4 sing 113 n n 
CAX HAX BK4 sing 114 n n 
NAY C4 BK4 sing 115 n y 
NAY NAN BK4 sing 116 n y 
#
_atom_sites.entry_id                     3T3V 
_atom_sites.fract_transf_matrix[1][1]    0.020845 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004991 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015435 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BK4 A 1 701 701 BK4 BK4 . 
C 3 EDO A 1 711 711 EDO EDO . 
D 4 HOH A 1 801 801 HOH HOH . 
D 4 HOH A 2 802 802 HOH HOH . 
D 4 HOH A 3 803 803 HOH HOH . 
D 4 HOH A 4 804 804 HOH HOH . 
D 4 HOH A 5 805 805 HOH HOH . 
D 4 HOH A 6 806 806 HOH HOH . 
D 4 HOH A 7 807 807 HOH HOH . 
D 4 HOH A 8 808 808 HOH HOH . 
D 4 HOH A 9 809 809 HOH HOH . 
D 4 HOH A 10 810 810 HOH HOH . 
D 4 HOH A 11 811 811 HOH HOH . 
D 4 HOH A 12 812 812 HOH HOH . 
D 4 HOH A 13 813 813 HOH HOH . 
D 4 HOH A 14 814 814 HOH HOH . 
D 4 HOH A 15 815 815 HOH HOH . 
D 4 HOH A 16 816 816 HOH HOH . 
D 4 HOH A 17 817 817 HOH HOH . 
D 4 HOH A 18 818 818 HOH HOH . 
D 4 HOH A 19 819 819 HOH HOH . 
D 4 HOH A 20 820 820 HOH HOH . 
D 4 HOH A 21 821 821 HOH HOH . 
D 4 HOH A 22 822 822 HOH HOH . 
D 4 HOH A 23 823 823 HOH HOH . 
D 4 HOH A 24 824 824 HOH HOH . 
D 4 HOH A 25 825 825 HOH HOH . 
D 4 HOH A 26 826 826 HOH HOH . 
D 4 HOH A 27 827 827 HOH HOH . 
D 4 HOH A 28 828 828 HOH HOH . 
D 4 HOH A 29 829 829 HOH HOH . 
D 4 HOH A 30 830 830 HOH HOH . 
D 4 HOH A 31 831 831 HOH HOH . 
D 4 HOH A 32 832 832 HOH HOH . 
D 4 HOH A 33 833 833 HOH HOH . 
D 4 HOH A 34 834 834 HOH HOH . 
D 4 HOH A 35 835 835 HOH HOH . 
D 4 HOH A 36 836 836 HOH HOH . 
D 4 HOH A 37 837 837 HOH HOH . 
D 4 HOH A 38 838 838 HOH HOH . 
D 4 HOH A 39 839 839 HOH HOH . 
D 4 HOH A 40 840 840 HOH HOH . 
D 4 HOH A 41 841 841 HOH HOH . 
D 4 HOH A 42 842 842 HOH HOH . 
D 4 HOH A 43 843 843 HOH HOH . 
D 4 HOH A 44 844 844 HOH HOH . 
D 4 HOH A 45 845 845 HOH HOH . 
D 4 HOH A 46 846 846 HOH HOH . 
D 4 HOH A 47 847 847 HOH HOH . 
D 4 HOH A 48 848 848 HOH HOH . 
D 4 HOH A 49 849 849 HOH HOH . 
D 4 HOH A 50 850 850 HOH HOH . 
D 4 HOH A 51 851 851 HOH HOH . 
D 4 HOH A 52 852 852 HOH HOH . 
D 4 HOH A 53 853 853 HOH HOH . 
D 4 HOH A 54 854 854 HOH HOH . 
D 4 HOH A 55 855 855 HOH HOH . 
D 4 HOH A 56 856 856 HOH HOH . 
D 4 HOH A 57 857 857 HOH HOH . 
D 4 HOH A 58 858 858 HOH HOH . 
D 4 HOH A 59 859 859 HOH HOH . 
D 4 HOH A 60 860 860 HOH HOH . 
D 4 HOH A 61 861 861 HOH HOH . 
D 4 HOH A 62 862 862 HOH HOH . 
D 4 HOH A 63 863 863 HOH HOH . 
D 4 HOH A 64 864 864 HOH HOH . 
D 4 HOH A 65 865 865 HOH HOH . 
D 4 HOH A 66 866 866 HOH HOH . 
D 4 HOH A 67 867 867 HOH HOH . 
D 4 HOH A 68 868 868 HOH HOH . 
D 4 HOH A 69 869 869 HOH HOH . 
D 4 HOH A 70 870 870 HOH HOH . 
D 4 HOH A 71 871 871 HOH HOH . 
D 4 HOH A 72 872 872 HOH HOH . 
D 4 HOH A 73 873 873 HOH HOH . 
D 4 HOH A 74 874 874 HOH HOH . 
D 4 HOH A 75 875 875 HOH HOH . 
D 4 HOH A 76 876 876 HOH HOH . 
D 4 HOH A 77 877 877 HOH HOH . 
D 4 HOH A 78 878 878 HOH HOH . 
D 4 HOH A 79 879 879 HOH HOH . 
D 4 HOH A 80 880 880 HOH HOH . 
D 4 HOH A 81 881 881 HOH HOH . 
D 4 HOH A 82 882 882 HOH HOH . 
D 4 HOH A 83 883 883 HOH HOH . 
D 4 HOH A 84 884 884 HOH HOH . 
D 4 HOH A 85 885 885 HOH HOH . 
D 4 HOH A 86 886 886 HOH HOH . 
D 4 HOH A 87 887 887 HOH HOH . 
D 4 HOH A 88 888 888 HOH HOH . 
D 4 HOH A 89 889 889 HOH HOH . 
D 4 HOH A 90 890 890 HOH HOH . 
D 4 HOH A 91 891 891 HOH HOH . 
D 4 HOH A 92 892 892 HOH HOH . 
D 4 HOH A 93 893 893 HOH HOH . 
D 4 HOH A 94 894 894 HOH HOH . 
D 4 HOH A 95 895 895 HOH HOH . 
D 4 HOH A 96 896 896 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 BK4 . . . B 2 16.686 11.623 62.7 1 28.15 ? N1 BK4 701 A 1 
HETATM 2 C C2 BK4 . . . B 2 17.885 12.117 62.369 1 30.96 ? C2 BK4 701 A 1 
HETATM 3 N N3 BK4 . . . B 2 18.017 13.435 62.237 1 30.81 ? N3 BK4 701 A 1 
HETATM 4 C C4 BK4 . . . B 2 16.971 14.27 62.446 1 30.89 ? C4 BK4 701 A 1 
HETATM 5 C C5 BK4 . . . B 2 15.724 13.778 62.807 1 28.6 ? C5 BK4 701 A 1 
HETATM 6 C C6 BK4 . . . B 2 15.597 12.392 62.925 1 28.16 ? C6 BK4 701 A 1 
HETATM 7 C CAA BK4 . . . B 2 6.855 14.748 64.684 1 29.28 ? CAA BK4 701 A 1 
HETATM 8 C CAB BK4 . . . B 2 17.885 17.865 62.701 1 31.23 ? CAB BK4 701 A 1 
HETATM 9 C CAC BK4 . . . B 2 18.04 16.646 60.513 1 34.75 ? CAC BK4 701 A 1 
HETATM 10 N NAD BK4 . . . B 2 14.459 11.796 63.255 1 27.19 ? NAD BK4 701 A 1 
HETATM 11 C CAF BK4 . . . B 2 9.948 13.54 66.159 1 26.16 ? CAF BK4 701 A 1 
HETATM 12 C CAG BK4 . . . B 2 12.677 15.635 62.524 1 24.79 ? CAG BK4 701 A 1 
HETATM 13 C CAH BK4 . . . B 2 11.29 13.547 65.839 1 24.44 ? CAH BK4 701 A 1 
HETATM 14 C CAI BK4 . . . B 2 11.318 15.66 62.848 1 24.19 ? CAI BK4 701 A 1 
HETATM 15 C CAJ BK4 . . . B 2 9.492 14.973 64.282 1 24.7 ? CAJ BK4 701 A 1 
HETATM 16 C CAK BK4 . . . B 2 13.113 14.208 64.413 1 22.64 ? CAK BK4 701 A 1 
HETATM 17 N NAN BK4 . . . B 2 15.694 15.97 62.659 1 28.57 ? NAN BK4 701 A 1 
HETATM 18 O OAO BK4 . . . B 2 7.734 14.236 65.728 1 28.44 ? OAO BK4 701 A 1 
HETATM 19 C CAP BK4 . . . B 2 9.044 14.253 65.379 1 26.5 ? CAP BK4 701 A 1 
HETATM 20 C CAQ BK4 . . . B 2 13.581 14.903 63.296 1 25.29 ? CAQ BK4 701 A 1 
HETATM 21 C CAS BK4 . . . B 2 14.931 14.912 62.947 1 27.29 ? CAS BK4 701 A 1 
HETATM 22 C CAT BK4 . . . B 2 10.848 14.959 63.955 1 25.1 ? CAT BK4 701 A 1 
HETATM 23 C CAU BK4 . . . B 2 11.754 14.235 64.737 1 24.97 ? CAU BK4 701 A 1 
HETATM 24 C CAX BK4 . . . B 2 17.982 16.492 62.038 1 32.38 ? CAX BK4 701 A 1 
HETATM 25 N NAY BK4 . . . B 2 16.849 15.599 62.393 1 30.97 ? NAY BK4 701 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           25 
#