data_3T3Y
#
_model_server_result.job_id            -kwCvzBhGC5eY5_mVfnT2w 
_model_server_result.datetime_utc      '2024-11-15 12:39:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t3y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    3T3Y 
#
_exptl.entry_id    3T3Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              196.16 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(3-hydroxypyridin-2-yl)carbonyl]glycine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         71.25 
_cell.angle_beta          72.21 
_cell.angle_gamma         66.7 
_cell.entry_id            3T3Y 
_cell.length_a            36.813 
_cell.length_b            38.594 
_cell.length_c            40.487 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T3Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O HOH . A HOH 1 1_555 B FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc2 A NE2 HIS 121 A HIS 131 1_555 B FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc3 A OD1 ASP 123 A ASP 133 1_555 B FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc4 A NE2 HIS 177 A HIS 187 1_555 B FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc5 B FE FE . A FE 300 1_555 C N2 MD6 . A MD6 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc6 B FE FE . A FE 300 1_555 C O3 MD6 . A MD6 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
#
_chem_comp.formula           'C8 H8 N2 O4' 
_chem_comp.formula_weight    196.16 
_chem_comp.id                MD6 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              N-[(3-hydroxypyridin-2-yl)carbonyl]glycine 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C MD6 doub 218 n n 
OXT C MD6 sing 219 n n 
C CA MD6 sing 220 n n 
CA N MD6 sing 221 n n 
N C3 MD6 sing 222 n n 
N H2 MD6 sing 223 n n 
CA HA2 MD6 sing 224 n n 
CA HA3 MD6 sing 225 n n 
C4 N2 MD6 doub 226 n y 
N2 C5 MD6 sing 227 n y 
OXT HXT MD6 sing 228 n n 
C3 O3 MD6 doub 229 n n 
C3 C4 MD6 sing 230 n n 
C8 C4 MD6 sing 231 n y 
O4 C8 MD6 sing 232 n n 
O4 HO4 MD6 sing 233 n n 
C6 C5 MD6 doub 234 n y 
C5 H5 MD6 sing 235 n n 
C7 C6 MD6 sing 236 n y 
C6 H6 MD6 sing 237 n n 
C8 C7 MD6 doub 238 n y 
C7 H7 MD6 sing 239 n n 
#
_atom_sites.entry_id                     3T3Y 
_atom_sites.fract_transf_matrix[1][1]    0.027164 
_atom_sites.fract_transf_matrix[1][2]    -0.011701 
_atom_sites.fract_transf_matrix[1][3]    -0.006197 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028212 
_atom_sites.fract_transf_matrix[2][3]    -0.006649 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02665 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 300 300 FE FE . 
C 3 MD6 A 1 401 401 MD6 MD6 . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 2 2 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 6 6 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 10 10 HOH HOH . 
D 4 HOH A 10 217 11 HOH HOH . 
D 4 HOH A 11 218 12 HOH HOH . 
D 4 HOH A 12 219 13 HOH HOH . 
D 4 HOH A 13 220 14 HOH HOH . 
D 4 HOH A 14 221 15 HOH HOH . 
D 4 HOH A 15 222 16 HOH HOH . 
D 4 HOH A 16 223 17 HOH HOH . 
D 4 HOH A 17 224 18 HOH HOH . 
D 4 HOH A 18 225 19 HOH HOH . 
D 4 HOH A 19 226 20 HOH HOH . 
D 4 HOH A 20 227 21 HOH HOH . 
D 4 HOH A 21 228 22 HOH HOH . 
D 4 HOH A 22 229 23 HOH HOH . 
D 4 HOH A 23 230 24 HOH HOH . 
D 4 HOH A 24 231 25 HOH HOH . 
D 4 HOH A 25 232 26 HOH HOH . 
D 4 HOH A 26 233 27 HOH HOH . 
D 4 HOH A 27 234 28 HOH HOH . 
D 4 HOH A 28 235 29 HOH HOH . 
D 4 HOH A 29 236 31 HOH HOH . 
D 4 HOH A 30 237 33 HOH HOH . 
D 4 HOH A 31 238 34 HOH HOH . 
D 4 HOH A 32 239 39 HOH HOH . 
D 4 HOH A 33 240 41 HOH HOH . 
D 4 HOH A 34 241 42 HOH HOH . 
D 4 HOH A 35 242 44 HOH HOH . 
D 4 HOH A 36 243 47 HOH HOH . 
D 4 HOH A 37 244 48 HOH HOH . 
D 4 HOH A 38 245 51 HOH HOH . 
D 4 HOH A 39 246 52 HOH HOH . 
D 4 HOH A 40 247 53 HOH HOH . 
D 4 HOH A 41 248 54 HOH HOH . 
D 4 HOH A 42 249 55 HOH HOH . 
D 4 HOH A 43 250 56 HOH HOH . 
D 4 HOH A 44 251 57 HOH HOH . 
D 4 HOH A 45 252 58 HOH HOH . 
D 4 HOH A 46 253 60 HOH HOH . 
D 4 HOH A 47 254 61 HOH HOH . 
D 4 HOH A 48 255 62 HOH HOH . 
D 4 HOH A 49 256 63 HOH HOH . 
D 4 HOH A 50 257 65 HOH HOH . 
D 4 HOH A 51 258 66 HOH HOH . 
D 4 HOH A 52 259 67 HOH HOH . 
D 4 HOH A 53 260 68 HOH HOH . 
D 4 HOH A 54 261 69 HOH HOH . 
D 4 HOH A 55 262 71 HOH HOH . 
D 4 HOH A 56 263 72 HOH HOH . 
D 4 HOH A 57 264 77 HOH HOH . 
D 4 HOH A 58 265 79 HOH HOH . 
D 4 HOH A 59 266 80 HOH HOH . 
D 4 HOH A 60 267 83 HOH HOH . 
D 4 HOH A 61 268 85 HOH HOH . 
D 4 HOH A 62 269 86 HOH HOH . 
D 4 HOH A 63 270 87 HOH HOH . 
D 4 HOH A 64 271 89 HOH HOH . 
D 4 HOH A 65 272 90 HOH HOH . 
D 4 HOH A 66 273 92 HOH HOH . 
D 4 HOH A 67 274 96 HOH HOH . 
D 4 HOH A 68 275 97 HOH HOH . 
D 4 HOH A 69 276 99 HOH HOH . 
D 4 HOH A 70 277 100 HOH HOH . 
D 4 HOH A 71 278 102 HOH HOH . 
D 4 HOH A 72 279 103 HOH HOH . 
D 4 HOH A 73 280 107 HOH HOH . 
D 4 HOH A 74 281 110 HOH HOH . 
D 4 HOH A 75 282 111 HOH HOH . 
D 4 HOH A 76 283 112 HOH HOH . 
D 4 HOH A 77 284 113 HOH HOH . 
D 4 HOH A 78 285 114 HOH HOH . 
D 4 HOH A 79 286 115 HOH HOH . 
D 4 HOH A 80 287 120 HOH HOH . 
D 4 HOH A 81 288 124 HOH HOH . 
D 4 HOH A 82 289 125 HOH HOH . 
D 4 HOH A 83 290 126 HOH HOH . 
D 4 HOH A 84 291 127 HOH HOH . 
D 4 HOH A 85 292 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C MD6 . . . C 3 -4.555 2.015 -1.034 1 25.72 ? C MD6 401 A 1 
HETATM 2 N N MD6 . . . C 3 -3.351 2.333 1.015 1 31.18 ? N MD6 401 A 1 
HETATM 3 O O MD6 . . . C 3 -4.346 3.29 -1.302 1 26.48 ? O MD6 401 A 1 
HETATM 4 C CA MD6 . . . C 3 -4.254 1.501 0.352 1 27.76 ? CA MD6 401 A 1 
HETATM 5 N N2 MD6 . . . C 3 -1.596 2.428 4.261 1 34.45 ? N2 MD6 401 A 1 
HETATM 6 O OXT MD6 . . . C 3 -4.961 1.246 -1.895 1 25.28 ? OXT MD6 401 A 1 
HETATM 7 C C3 MD6 . . . C 3 -2.992 2.036 2.355 1 31.54 ? C3 MD6 401 A 1 
HETATM 8 O O3 MD6 . . . C 3 -3.466 1.041 2.888 1 31.03 ? O3 MD6 401 A 1 
HETATM 9 C C4 MD6 . . . C 3 -2.039 2.883 3.084 1 33.23 ? C4 MD6 401 A 1 
HETATM 10 O O4 MD6 . . . C 3 -2.136 4.509 1.348 1 33.05 ? O4 MD6 401 A 1 
HETATM 11 C C5 MD6 . . . C 3 -0.713 3.139 4.965 1 35.34 ? C5 MD6 401 A 1 
HETATM 12 C C6 MD6 . . . C 3 -0.272 4.359 4.489 1 35.32 ? C6 MD6 401 A 1 
HETATM 13 C C7 MD6 . . . C 3 -0.74 4.856 3.264 1 34.6 ? C7 MD6 401 A 1 
HETATM 14 C C8 MD6 . . . C 3 -1.643 4.09 2.544 1 32.62 ? C8 MD6 401 A 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#