data_3T45
#
_model_server_result.job_id            FNdaJtPutupdK_VJfJHoUQ 
_model_server_result.datetime_utc      '2024-11-21 14:34:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t45 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    3T45 
#
_exptl.entry_id    3T45 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.08 
_cell.angle_gamma         90 
_cell.entry_id            3T45 
_cell.length_a            61.452 
_cell.length_b            106.139 
_cell.length_c            124.845 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T45 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 210 A LYS 216 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale2 B NZ LYS 210 B LYS 216 1_555 G C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.285 ? 
covale ? covale3 C NZ LYS 210 C LYS 216 1_555 O C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 373 n n 
C1 C6 RET sing 374 n n 
C1 C16 RET sing 375 n n 
C1 C17 RET sing 376 n n 
C2 C3 RET sing 377 n n 
C2 H21 RET sing 378 n n 
C2 H22 RET sing 379 n n 
C3 C4 RET sing 380 n n 
C3 H31 RET sing 381 n n 
C3 H32 RET sing 382 n n 
C4 C5 RET sing 383 n n 
C4 H41 RET sing 384 n n 
C4 H42 RET sing 385 n n 
C5 C6 RET doub 386 n n 
C5 C18 RET sing 387 n n 
C6 C7 RET sing 388 n n 
C7 C8 RET doub 389 e n 
C7 H7 RET sing 390 n n 
C8 C9 RET sing 391 n n 
C8 H8 RET sing 392 n n 
C9 C10 RET doub 393 e n 
C9 C19 RET sing 394 n n 
C10 C11 RET sing 395 n n 
C10 H10 RET sing 396 n n 
C11 C12 RET doub 397 e n 
C11 H11 RET sing 398 n n 
C12 C13 RET sing 399 n n 
C12 H12 RET sing 400 n n 
C13 C14 RET doub 401 e n 
C13 C20 RET sing 402 n n 
C14 C15 RET sing 403 n n 
C14 H14 RET sing 404 n n 
C15 O1 RET doub 405 n n 
C15 H15 RET sing 406 n n 
C16 H161 RET sing 407 n n 
C16 H162 RET sing 408 n n 
C16 H163 RET sing 409 n n 
C17 H171 RET sing 410 n n 
C17 H172 RET sing 411 n n 
C17 H173 RET sing 412 n n 
C18 H181 RET sing 413 n n 
C18 H182 RET sing 414 n n 
C18 H183 RET sing 415 n n 
C19 H191 RET sing 416 n n 
C19 H192 RET sing 417 n n 
C19 H193 RET sing 418 n n 
C20 H201 RET sing 419 n n 
C20 H202 RET sing 420 n n 
C20 H203 RET sing 421 n n 
#
_atom_sites.entry_id                     3T45 
_atom_sites.fract_transf_matrix[1][1]    0.016273 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001447 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009422 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008042 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 RET A 1 301 301 RET RET . 
E 3 LI1 A 1 600 600 LI1 LI1 . 
F 3 LI1 A 1 608 608 LI1 LI1 . 
G 2 RET B 1 301 301 RET RET . 
H 3 LI1 B 1 602 602 LI1 LI1 . 
I 3 LI1 B 1 603 603 LI1 LI1 . 
J 3 LI1 B 1 604 604 LI1 LI1 . 
K 3 LI1 B 1 605 605 LI1 LI1 . 
L 3 LI1 B 1 615 615 LI1 LI1 . 
M 3 LI1 B 1 611 611 LI1 LI1 . 
N 3 LI1 B 1 612 612 LI1 LI1 . 
O 2 RET C 1 301 301 RET RET . 
P 3 LI1 C 1 606 606 LI1 LI1 . 
Q 3 LI1 C 1 613 613 LI1 LI1 . 
R 4 HOH A 1 401 401 HOH HOH . 
R 4 HOH A 2 402 402 HOH HOH . 
R 4 HOH A 3 403 403 HOH HOH . 
R 4 HOH A 4 406 406 HOH HOH . 
R 4 HOH A 5 412 412 HOH HOH . 
R 4 HOH A 6 418 418 HOH HOH . 
R 4 HOH A 7 430 430 HOH HOH . 
R 4 HOH A 8 431 431 HOH HOH . 
R 4 HOH A 9 432 432 HOH HOH . 
R 4 HOH A 10 501 501 HOH HOH . 
R 4 HOH A 11 514 514 HOH HOH . 
S 4 HOH B 1 401 401 HOH HOH . 
S 4 HOH B 2 402 402 HOH HOH . 
S 4 HOH B 3 403 403 HOH HOH . 
S 4 HOH B 4 404 404 HOH HOH . 
S 4 HOH B 5 406 406 HOH HOH . 
S 4 HOH B 6 407 407 HOH HOH . 
S 4 HOH B 7 408 413 HOH HOH . 
S 4 HOH B 8 411 411 HOH HOH . 
S 4 HOH B 9 413 413 HOH HOH . 
S 4 HOH B 10 417 417 HOH HOH . 
S 4 HOH B 11 418 418 HOH HOH . 
S 4 HOH B 12 419 419 HOH HOH . 
S 4 HOH B 13 431 431 HOH HOH . 
S 4 HOH B 14 514 514 HOH HOH . 
T 4 HOH C 1 401 401 HOH HOH . 
T 4 HOH C 2 402 402 HOH HOH . 
T 4 HOH C 3 404 404 HOH HOH . 
T 4 HOH C 4 406 406 HOH HOH . 
T 4 HOH C 5 411 411 HOH HOH . 
T 4 HOH C 6 412 412 HOH HOH . 
T 4 HOH C 7 413 413 HOH HOH . 
T 4 HOH C 8 417 417 HOH HOH . 
T 4 HOH C 9 418 418 HOH HOH . 
T 4 HOH C 10 419 419 HOH HOH . 
T 4 HOH C 11 431 431 HOH HOH . 
T 4 HOH C 12 432 432 HOH HOH . 
T 4 HOH C 13 501 501 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . G 2 -23.331 -35.53 21.204 1 31.4 ? C1 RET 301 B 1 
HETATM 2 C C2 RET . . . G 2 -22.401 -36.005 20.087 1 29.61 ? C2 RET 301 B 1 
HETATM 3 C C3 RET . . . G 2 -20.939 -36.032 20.45 1 30.61 ? C3 RET 301 B 1 
HETATM 4 C C4 RET . . . G 2 -20.691 -36.899 21.673 1 31.87 ? C4 RET 301 B 1 
HETATM 5 C C5 RET . . . G 2 -21.644 -36.563 22.806 1 31.87 ? C5 RET 301 B 1 
HETATM 6 C C6 RET . . . G 2 -22.871 -35.999 22.615 1 31.69 ? C6 RET 301 B 1 
HETATM 7 C C7 RET . . . G 2 -23.751 -35.978 23.817 1 29.99 ? C7 RET 301 B 1 
HETATM 8 C C8 RET . . . G 2 -24.995 -35.51 23.949 1 30.9 ? C8 RET 301 B 1 
HETATM 9 C C9 RET . . . G 2 -25.732 -35.576 25.251 1 34.31 ? C9 RET 301 B 1 
HETATM 10 C C10 RET . . . G 2 -26.987 -35.075 25.272 1 35.34 ? C10 RET 301 B 1 
HETATM 11 C C11 RET . . . G 2 -27.917 -35.007 26.416 1 33.59 ? C11 RET 301 B 1 
HETATM 12 C C12 RET . . . G 2 -29.068 -34.462 26.065 1 32.71 ? C12 RET 301 B 1 
HETATM 13 C C13 RET . . . G 2 -30.245 -34.214 26.902 1 32.01 ? C13 RET 301 B 1 
HETATM 14 C C14 RET . . . G 2 -31.289 -33.63 26.299 1 29.38 ? C14 RET 301 B 1 
HETATM 15 C C15 RET . . . G 2 -32.528 -33.301 26.951 1 27.55 ? C15 RET 301 B 1 
HETATM 16 C C16 RET . . . G 2 -23.449 -34.014 21.174 1 31.36 ? C16 RET 301 B 1 
HETATM 17 C C17 RET . . . G 2 -24.654 -36.231 20.788 1 30.67 ? C17 RET 301 B 1 
HETATM 18 C C18 RET . . . G 2 -21.169 -37.01 24.148 1 31.24 ? C18 RET 301 B 1 
HETATM 19 C C19 RET . . . G 2 -25.132 -36.168 26.521 1 33.71 ? C19 RET 301 B 1 
HETATM 20 C C20 RET . . . G 2 -30.22 -34.617 28.347 1 33.54 ? C20 RET 301 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#