data_3T45 # _model_server_result.job_id 4FrinD-qSTxbQOLn8QLAFA _model_server_result.datetime_utc '2024-11-21 14:06:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":301}' # _entry.id 3T45 # _exptl.entry_id 3T45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.08 _cell.angle_gamma 90 _cell.entry_id 3T45 _cell.length_a 61.452 _cell.length_b 106.139 _cell.length_c 124.845 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 210 A LYS 216 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale2 B NZ LYS 210 B LYS 216 1_555 G C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.285 ? covale ? covale3 C NZ LYS 210 C LYS 216 1_555 O C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 373 n n C1 C6 RET sing 374 n n C1 C16 RET sing 375 n n C1 C17 RET sing 376 n n C2 C3 RET sing 377 n n C2 H21 RET sing 378 n n C2 H22 RET sing 379 n n C3 C4 RET sing 380 n n C3 H31 RET sing 381 n n C3 H32 RET sing 382 n n C4 C5 RET sing 383 n n C4 H41 RET sing 384 n n C4 H42 RET sing 385 n n C5 C6 RET doub 386 n n C5 C18 RET sing 387 n n C6 C7 RET sing 388 n n C7 C8 RET doub 389 e n C7 H7 RET sing 390 n n C8 C9 RET sing 391 n n C8 H8 RET sing 392 n n C9 C10 RET doub 393 e n C9 C19 RET sing 394 n n C10 C11 RET sing 395 n n C10 H10 RET sing 396 n n C11 C12 RET doub 397 e n C11 H11 RET sing 398 n n C12 C13 RET sing 399 n n C12 H12 RET sing 400 n n C13 C14 RET doub 401 e n C13 C20 RET sing 402 n n C14 C15 RET sing 403 n n C14 H14 RET sing 404 n n C15 O1 RET doub 405 n n C15 H15 RET sing 406 n n C16 H161 RET sing 407 n n C16 H162 RET sing 408 n n C16 H163 RET sing 409 n n C17 H171 RET sing 410 n n C17 H172 RET sing 411 n n C17 H173 RET sing 412 n n C18 H181 RET sing 413 n n C18 H182 RET sing 414 n n C18 H183 RET sing 415 n n C19 H191 RET sing 416 n n C19 H192 RET sing 417 n n C19 H193 RET sing 418 n n C20 H201 RET sing 419 n n C20 H202 RET sing 420 n n C20 H203 RET sing 421 n n # _atom_sites.entry_id 3T45 _atom_sites.fract_transf_matrix[1][1] 0.016273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001447 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RET A 1 301 301 RET RET . E 3 LI1 A 1 600 600 LI1 LI1 . F 3 LI1 A 1 608 608 LI1 LI1 . G 2 RET B 1 301 301 RET RET . H 3 LI1 B 1 602 602 LI1 LI1 . I 3 LI1 B 1 603 603 LI1 LI1 . J 3 LI1 B 1 604 604 LI1 LI1 . K 3 LI1 B 1 605 605 LI1 LI1 . L 3 LI1 B 1 615 615 LI1 LI1 . M 3 LI1 B 1 611 611 LI1 LI1 . N 3 LI1 B 1 612 612 LI1 LI1 . O 2 RET C 1 301 301 RET RET . P 3 LI1 C 1 606 606 LI1 LI1 . Q 3 LI1 C 1 613 613 LI1 LI1 . R 4 HOH A 1 401 401 HOH HOH . R 4 HOH A 2 402 402 HOH HOH . R 4 HOH A 3 403 403 HOH HOH . R 4 HOH A 4 406 406 HOH HOH . R 4 HOH A 5 412 412 HOH HOH . R 4 HOH A 6 418 418 HOH HOH . R 4 HOH A 7 430 430 HOH HOH . R 4 HOH A 8 431 431 HOH HOH . R 4 HOH A 9 432 432 HOH HOH . R 4 HOH A 10 501 501 HOH HOH . R 4 HOH A 11 514 514 HOH HOH . S 4 HOH B 1 401 401 HOH HOH . S 4 HOH B 2 402 402 HOH HOH . S 4 HOH B 3 403 403 HOH HOH . S 4 HOH B 4 404 404 HOH HOH . S 4 HOH B 5 406 406 HOH HOH . S 4 HOH B 6 407 407 HOH HOH . S 4 HOH B 7 408 413 HOH HOH . S 4 HOH B 8 411 411 HOH HOH . S 4 HOH B 9 413 413 HOH HOH . S 4 HOH B 10 417 417 HOH HOH . S 4 HOH B 11 418 418 HOH HOH . S 4 HOH B 12 419 419 HOH HOH . S 4 HOH B 13 431 431 HOH HOH . S 4 HOH B 14 514 514 HOH HOH . T 4 HOH C 1 401 401 HOH HOH . T 4 HOH C 2 402 402 HOH HOH . T 4 HOH C 3 404 404 HOH HOH . T 4 HOH C 4 406 406 HOH HOH . T 4 HOH C 5 411 411 HOH HOH . T 4 HOH C 6 412 412 HOH HOH . T 4 HOH C 7 413 413 HOH HOH . T 4 HOH C 8 417 417 HOH HOH . T 4 HOH C 9 418 418 HOH HOH . T 4 HOH C 10 419 419 HOH HOH . T 4 HOH C 11 431 431 HOH HOH . T 4 HOH C 12 432 432 HOH HOH . T 4 HOH C 13 501 501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . O 2 -41.178 -9.476 21.233 1 31.75 ? C1 RET 301 C 1 HETATM 2 C C2 RET . . . O 2 -42.041 -10.054 20.111 1 31.57 ? C2 RET 301 C 1 HETATM 3 C C3 RET . . . O 2 -42.917 -11.224 20.502 1 31 ? C3 RET 301 C 1 HETATM 4 C C4 RET . . . O 2 -43.811 -10.859 21.654 1 31.02 ? C4 RET 301 C 1 HETATM 5 C C5 RET . . . O 2 -42.949 -10.351 22.798 1 33.51 ? C5 RET 301 C 1 HETATM 6 C C6 RET . . . O 2 -41.83 -9.612 22.623 1 32.59 ? C6 RET 301 C 1 HETATM 7 C C7 RET . . . O 2 -41.379 -8.869 23.838 1 32.02 ? C7 RET 301 C 1 HETATM 8 C C8 RET . . . O 2 -40.336 -8.042 23.95 1 33.7 ? C8 RET 301 C 1 HETATM 9 C C9 RET . . . O 2 -40.029 -7.378 25.246 1 36.93 ? C9 RET 301 C 1 HETATM 10 C C10 RET . . . O 2 -38.958 -6.555 25.291 1 38.6 ? C10 RET 301 C 1 HETATM 11 C C11 RET . . . O 2 -38.429 -5.784 26.437 1 36.19 ? C11 RET 301 C 1 HETATM 12 C C12 RET . . . O 2 -37.353 -5.056 26.132 1 36.62 ? C12 RET 301 C 1 HETATM 13 C C13 RET . . . O 2 -36.555 -4.174 27.007 1 36.28 ? C13 RET 301 C 1 HETATM 14 C C14 RET . . . O 2 -35.488 -3.545 26.465 1 35.63 ? C14 RET 301 C 1 HETATM 15 C C15 RET . . . O 2 -34.559 -2.627 27.131 1 34.23 ? C15 RET 301 C 1 HETATM 16 C C16 RET . . . O 2 -39.836 -10.163 21.195 1 31.91 ? C16 RET 301 C 1 HETATM 17 C C17 RET . . . O 2 -41.023 -7.99 20.859 1 31.96 ? C17 RET 301 C 1 HETATM 18 C C18 RET . . . O 2 -43.544 -10.533 24.162 1 34.33 ? C18 RET 301 C 1 HETATM 19 C C19 RET . . . O 2 -40.88 -7.614 26.471 1 36.23 ? C19 RET 301 C 1 HETATM 20 C C20 RET . . . O 2 -36.947 -3.992 28.436 1 36.71 ? C20 RET 301 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #