data_3T4G # _model_server_result.job_id euTegNCiV26brhpHUF0foA _model_server_result.datetime_utc '2025-02-27 02:44:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":15}' # _entry.id 3T4G # _exptl.entry_id 3T4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T4G _cell.length_a 44.39 _cell.length_b 44.39 _cell.length_c 44.39 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,C,D 2 1,2,3,4 A,C,D 3 1,3 A,B,C,D,E,F,G 4 1,3 B,E,F,G 5 1,5,3,6 B,E,F,G 6 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 44.39 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 44.39 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 44.39 44.39 0 6 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 44.39 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ORN 1 A ORN 0 1_555 A N ALA 2 A ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A NE ORN 1 A ORN 0 1_555 A C LYS 14 A LYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C VAL 8 A VAL 7 1_555 A NE ORN 9 A ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C ORN 9 A ORN 8 1_555 A N LYS 10 A LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale5 A C PHE 11 A PHE 10 1_555 A N HAO 12 A HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 A C HAO 12 A HAO 11 1_555 A N 4BF 13 A 4BF 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C 4BF 13 A 4BF 12 1_555 A N LYS 14 A LYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C ORN 1 B ORN 0 1_555 B N ALA 2 B ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 B NE ORN 1 B ORN 0 1_555 B C LYS 14 B LYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale10 B C VAL 8 B VAL 7 1_555 B NE ORN 9 B ORN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 B C ORN 9 B ORN 8 1_555 B N LYS 10 B LYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale12 B C PHE 11 B PHE 10 1_555 B N HAO 12 B HAO 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale13 B C HAO 12 B HAO 11 1_555 B N 4BF 13 B 4BF 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale14 B C 4BF 13 B 4BF 12 1_555 B N LYS 14 B LYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 159 n n C1 H11 MPD sing 160 n n C1 H12 MPD sing 161 n n C1 H13 MPD sing 162 n n C2 O2 MPD sing 163 n n C2 CM MPD sing 164 n n C2 C3 MPD sing 165 n n O2 HO2 MPD sing 166 n n CM HM1 MPD sing 167 n n CM HM2 MPD sing 168 n n CM HM3 MPD sing 169 n n C3 C4 MPD sing 170 n n C3 H31 MPD sing 171 n n C3 H32 MPD sing 172 n n C4 O4 MPD sing 173 n n C4 C5 MPD sing 174 n n C4 H4 MPD sing 175 n n O4 HO4 MPD sing 176 n n C5 H51 MPD sing 177 n n C5 H52 MPD sing 178 n n C5 H53 MPD sing 179 n n # _atom_sites.entry_id 3T4G _atom_sites.fract_transf_matrix[1][1] 0.022528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 14 1 MPD MPD . D 2 MPD A 1 15 1 MPD MPD . E 2 MPD B 1 14 1 MPD MPD . F 2 MPD B 1 15 1 MPD MPD . G 2 MPD B 1 16 1 MPD MPD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 2 12.804 24.655 -12.118 1 25.96 ? C1 MPD 15 B 1 HETATM 2 C C2 MPD . . . F 2 13.055 26.118 -12.44 1 38.92 ? C2 MPD 15 B 1 HETATM 3 O O2 MPD . . . F 2 13.855 26.684 -11.37 1 34.4 ? O2 MPD 15 B 1 HETATM 4 C CM MPD . . . F 2 13.834 26.21 -13.738 1 42.24 ? CM MPD 15 B 1 HETATM 5 C C3 MPD . . . F 2 11.789 26.957 -12.542 1 40.86 ? C3 MPD 15 B 1 HETATM 6 C C4 MPD . . . F 2 12.023 28.464 -12.636 1 45.39 ? C4 MPD 15 B 1 HETATM 7 O O4 MPD . . . F 2 11.139 29.057 -13.549 1 47.55 ? O4 MPD 15 B 1 HETATM 8 C C5 MPD . . . F 2 11.84 29.183 -11.304 1 50.19 ? C5 MPD 15 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 8 #