data_3T4H # _model_server_result.job_id bnS78bsD9BiTdlq71RelqA _model_server_result.datetime_utc '2024-10-12 14:31:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3T4H # _exptl.entry_id 3T4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.64 _cell.angle_beta 75.44 _cell.angle_gamma 66.42 _cell.entry_id 3T4H _cell.length_a 36.661 _cell.length_b 38.83 _cell.length_c 40.274 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 121 B HIS 131 1_555 B FE FE . B FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 A OD1 ASP 123 B ASP 133 1_555 B FE FE . B FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 A NE2 HIS 177 B HIS 187 1_555 B FE FE . B FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc4 D OAI MD5 . B MD5 217 1_555 B FE FE . B FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc5 D OAH MD5 . B MD5 217 1_555 B FE FE . B FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 B FE FE . B FE 300 1_555 E O HOH . B HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 3T4H _atom_sites.fract_transf_matrix[1][1] 0.027277 _atom_sites.fract_transf_matrix[1][2] -0.011903 _atom_sites.fract_transf_matrix[1][3] -0.00561 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028099 _atom_sites.fract_transf_matrix[2][3] -0.003622 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE B 1 300 300 FE FE . C 3 EPE B 1 1 1 EPE EPE . D 4 MD5 B 1 217 1 MD5 MD5 . E 5 HOH B 1 2 2 HOH HOH . E 5 HOH B 2 3 3 HOH HOH . E 5 HOH B 3 4 4 HOH HOH . E 5 HOH B 4 5 5 HOH HOH . E 5 HOH B 5 6 6 HOH HOH . E 5 HOH B 6 7 7 HOH HOH . E 5 HOH B 7 8 8 HOH HOH . E 5 HOH B 8 9 9 HOH HOH . E 5 HOH B 9 10 10 HOH HOH . E 5 HOH B 10 218 218 HOH HOH . E 5 HOH B 11 219 219 HOH HOH . E 5 HOH B 12 220 220 HOH HOH . E 5 HOH B 13 221 221 HOH HOH . E 5 HOH B 14 222 222 HOH HOH . E 5 HOH B 15 223 223 HOH HOH . E 5 HOH B 16 224 224 HOH HOH . E 5 HOH B 17 225 225 HOH HOH . E 5 HOH B 18 226 226 HOH HOH . E 5 HOH B 19 227 1 HOH HOH . E 5 HOH B 20 228 11 HOH HOH . E 5 HOH B 21 229 12 HOH HOH . E 5 HOH B 22 230 13 HOH HOH . E 5 HOH B 23 231 14 HOH HOH . E 5 HOH B 24 232 15 HOH HOH . E 5 HOH B 25 233 16 HOH HOH . E 5 HOH B 26 234 17 HOH HOH . E 5 HOH B 27 235 18 HOH HOH . E 5 HOH B 28 236 19 HOH HOH . E 5 HOH B 29 237 20 HOH HOH . E 5 HOH B 30 238 21 HOH HOH . E 5 HOH B 31 239 22 HOH HOH . E 5 HOH B 32 240 23 HOH HOH . E 5 HOH B 33 241 24 HOH HOH . E 5 HOH B 34 242 25 HOH HOH . E 5 HOH B 35 243 26 HOH HOH . E 5 HOH B 36 244 27 HOH HOH . E 5 HOH B 37 245 28 HOH HOH . E 5 HOH B 38 246 29 HOH HOH . E 5 HOH B 39 247 32 HOH HOH . E 5 HOH B 40 248 33 HOH HOH . E 5 HOH B 41 249 34 HOH HOH . E 5 HOH B 42 250 35 HOH HOH . E 5 HOH B 43 251 36 HOH HOH . E 5 HOH B 44 252 37 HOH HOH . E 5 HOH B 45 253 38 HOH HOH . E 5 HOH B 46 254 39 HOH HOH . E 5 HOH B 47 255 40 HOH HOH . E 5 HOH B 48 256 41 HOH HOH . E 5 HOH B 49 257 43 HOH HOH . E 5 HOH B 50 258 44 HOH HOH . E 5 HOH B 51 259 45 HOH HOH . E 5 HOH B 52 260 46 HOH HOH . E 5 HOH B 53 261 47 HOH HOH . E 5 HOH B 54 262 48 HOH HOH . E 5 HOH B 55 263 49 HOH HOH . E 5 HOH B 56 264 50 HOH HOH . E 5 HOH B 57 265 51 HOH HOH . E 5 HOH B 58 266 52 HOH HOH . E 5 HOH B 59 267 53 HOH HOH . E 5 HOH B 60 268 54 HOH HOH . E 5 HOH B 61 269 55 HOH HOH . E 5 HOH B 62 270 56 HOH HOH . E 5 HOH B 63 271 57 HOH HOH . E 5 HOH B 64 272 58 HOH HOH . E 5 HOH B 65 273 59 HOH HOH . E 5 HOH B 66 274 60 HOH HOH . E 5 HOH B 67 275 61 HOH HOH . E 5 HOH B 68 276 62 HOH HOH . E 5 HOH B 69 277 63 HOH HOH . E 5 HOH B 70 278 64 HOH HOH . E 5 HOH B 71 279 65 HOH HOH . E 5 HOH B 72 280 66 HOH HOH . E 5 HOH B 73 281 67 HOH HOH . E 5 HOH B 74 282 68 HOH HOH . E 5 HOH B 75 283 69 HOH HOH . E 5 HOH B 76 284 70 HOH HOH . E 5 HOH B 77 285 71 HOH HOH . E 5 HOH B 78 286 72 HOH HOH . E 5 HOH B 79 287 73 HOH HOH . E 5 HOH B 80 288 74 HOH HOH . E 5 HOH B 81 289 75 HOH HOH . E 5 HOH B 82 290 76 HOH HOH . E 5 HOH B 83 291 77 HOH HOH . E 5 HOH B 84 292 78 HOH HOH . E 5 HOH B 85 293 79 HOH HOH . E 5 HOH B 86 294 80 HOH HOH . E 5 HOH B 87 295 81 HOH HOH . E 5 HOH B 88 296 82 HOH HOH . E 5 HOH B 89 297 83 HOH HOH . E 5 HOH B 90 298 84 HOH HOH . E 5 HOH B 91 299 85 HOH HOH . E 5 HOH B 92 301 86 HOH HOH . E 5 HOH B 93 302 87 HOH HOH . E 5 HOH B 94 303 88 HOH HOH . E 5 HOH B 95 304 89 HOH HOH . E 5 HOH B 96 305 90 HOH HOH . E 5 HOH B 97 306 91 HOH HOH . E 5 HOH B 98 307 92 HOH HOH . E 5 HOH B 99 308 94 HOH HOH . E 5 HOH B 100 309 95 HOH HOH . E 5 HOH B 101 310 96 HOH HOH . E 5 HOH B 102 311 97 HOH HOH . E 5 HOH B 103 312 98 HOH HOH . E 5 HOH B 104 313 99 HOH HOH . E 5 HOH B 105 314 100 HOH HOH . E 5 HOH B 106 315 102 HOH HOH . E 5 HOH B 107 316 103 HOH HOH . E 5 HOH B 108 317 104 HOH HOH . E 5 HOH B 109 318 105 HOH HOH . E 5 HOH B 110 319 106 HOH HOH . E 5 HOH B 111 320 107 HOH HOH . E 5 HOH B 112 321 108 HOH HOH . E 5 HOH B 113 322 110 HOH HOH . E 5 HOH B 114 323 111 HOH HOH . E 5 HOH B 115 324 112 HOH HOH . E 5 HOH B 116 325 113 HOH HOH . E 5 HOH B 117 326 114 HOH HOH . E 5 HOH B 118 327 115 HOH HOH . E 5 HOH B 119 328 116 HOH HOH . E 5 HOH B 120 329 117 HOH HOH . E 5 HOH B 121 330 118 HOH HOH . E 5 HOH B 122 331 119 HOH HOH . E 5 HOH B 123 332 120 HOH HOH . E 5 HOH B 124 333 121 HOH HOH . E 5 HOH B 125 334 123 HOH HOH . E 5 HOH B 126 335 124 HOH HOH . E 5 HOH B 127 336 125 HOH HOH . E 5 HOH B 128 337 127 HOH HOH . E 5 HOH B 129 338 128 HOH HOH . E 5 HOH B 130 339 129 HOH HOH . E 5 HOH B 131 340 130 HOH HOH . E 5 HOH B 132 341 131 HOH HOH . E 5 HOH B 133 342 132 HOH HOH . E 5 HOH B 134 343 133 HOH HOH . E 5 HOH B 135 344 134 HOH HOH . E 5 HOH B 136 345 135 HOH HOH . E 5 HOH B 137 346 139 HOH HOH . E 5 HOH B 138 347 141 HOH HOH . E 5 HOH B 139 348 143 HOH HOH . E 5 HOH B 140 349 146 HOH HOH . E 5 HOH B 141 350 147 HOH HOH . E 5 HOH B 142 351 149 HOH HOH . E 5 HOH B 143 352 150 HOH HOH . E 5 HOH B 144 353 151 HOH HOH . E 5 HOH B 145 354 152 HOH HOH . E 5 HOH B 146 355 155 HOH HOH . E 5 HOH B 147 356 156 HOH HOH . E 5 HOH B 148 357 157 HOH HOH . E 5 HOH B 149 358 159 HOH HOH . E 5 HOH B 150 359 161 HOH HOH . E 5 HOH B 151 360 163 HOH HOH . E 5 HOH B 152 361 164 HOH HOH . E 5 HOH B 153 362 165 HOH HOH . E 5 HOH B 154 363 167 HOH HOH . E 5 HOH B 155 364 168 HOH HOH . E 5 HOH B 156 365 169 HOH HOH . E 5 HOH B 157 366 172 HOH HOH . E 5 HOH B 158 367 173 HOH HOH . E 5 HOH B 159 368 174 HOH HOH . E 5 HOH B 160 369 175 HOH HOH . E 5 HOH B 161 370 176 HOH HOH . E 5 HOH B 162 371 177 HOH HOH . E 5 HOH B 163 372 181 HOH HOH . E 5 HOH B 164 373 183 HOH HOH . E 5 HOH B 165 374 184 HOH HOH . E 5 HOH B 166 375 185 HOH HOH . E 5 HOH B 167 376 186 HOH HOH . E 5 HOH B 168 377 187 HOH HOH . E 5 HOH B 169 378 188 HOH HOH . E 5 HOH B 170 379 190 HOH HOH . E 5 HOH B 171 380 191 HOH HOH . E 5 HOH B 172 381 192 HOH HOH . E 5 HOH B 173 382 193 HOH HOH . E 5 HOH B 174 383 194 HOH HOH . E 5 HOH B 175 384 195 HOH HOH . E 5 HOH B 176 385 196 HOH HOH . E 5 HOH B 177 386 197 HOH HOH . E 5 HOH B 178 387 198 HOH HOH . E 5 HOH B 179 388 199 HOH HOH . E 5 HOH B 180 389 200 HOH HOH . E 5 HOH B 181 390 202 HOH HOH . E 5 HOH B 182 391 203 HOH HOH . E 5 HOH B 183 392 204 HOH HOH . E 5 HOH B 184 393 205 HOH HOH . E 5 HOH B 185 394 207 HOH HOH . E 5 HOH B 186 395 209 HOH HOH . E 5 HOH B 187 396 210 HOH HOH . E 5 HOH B 188 397 211 HOH HOH . E 5 HOH B 189 398 212 HOH HOH . E 5 HOH B 190 399 213 HOH HOH . E 5 HOH B 191 400 214 HOH HOH . E 5 HOH B 192 401 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 -5.938 -5.314 4.57 1 33.78 ? N1 EPE 1 B 1 HETATM 2 C C2 EPE . . . C 3 -5.373 -4.483 5.646 1 34.43 ? C2 EPE 1 B 1 HETATM 3 C C3 EPE . . . C 3 -3.875 -4.767 5.762 1 35.89 ? C3 EPE 1 B 1 HETATM 4 N N4 EPE . . . C 3 -3.189 -4.682 4.482 1 36.9 ? N4 EPE 1 B 1 HETATM 5 C C5 EPE . . . C 3 -3.904 -5.151 3.316 1 35.42 ? C5 EPE 1 B 1 HETATM 6 C C6 EPE . . . C 3 -5.379 -4.792 3.327 1 34.6 ? C6 EPE 1 B 1 HETATM 7 C C7 EPE . . . C 3 -1.743 -4.847 4.414 1 37.8 ? C7 EPE 1 B 1 HETATM 8 C C8 EPE . . . C 3 -1.021 -4.751 5.747 1 40.99 ? C8 EPE 1 B 1 HETATM 9 O O8 EPE . . . C 3 -1.121 -3.447 6.263 1 45.47 ? O8 EPE 1 B 1 HETATM 10 C C9 EPE . . . C 3 -7.421 -5.267 4.52 1 31.07 ? C9 EPE 1 B 1 HETATM 11 C C10 EPE . . . C 3 -7.953 -6.255 3.47 1 28.4 ? C10 EPE 1 B 1 HETATM 12 S S EPE . . . C 3 -9.768 -6.363 3.382 1 31.94 ? S EPE 1 B 1 HETATM 13 O O1S EPE . . . C 3 -10.274 -6.727 4.713 1 32.64 ? O1S EPE 1 B 1 HETATM 14 O O2S EPE . . . C 3 -10.323 -5.064 2.994 1 31.56 ? O2S EPE 1 B 1 HETATM 15 O O3S EPE . . . C 3 -10.197 -7.363 2.403 1 36.02 ? O3S EPE 1 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 15 #