data_3T4V
#
_model_server_result.job_id            8I8AMkjqWcL18amyBUYo5w 
_model_server_result.datetime_utc      '2024-11-15 01:39:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t4v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2000}' 
#
_entry.id    3T4V 
#
_exptl.entry_id    3T4V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         76.33 
_cell.angle_beta          74.56 
_cell.angle_gamma         65.28 
_cell.entry_id            3T4V 
_cell.length_a            37.07 
_cell.length_b            39.234 
_cell.length_c            40.261 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T4V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 121 A HIS 131 1_555 B FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc2 A OD1 ASP 123 A ASP 133 1_555 B FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc3 A NE2 HIS 177 A HIS 187 1_555 B FE FE . A FE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc4 B FE FE . A FE 300 1_555 C O04 MD3 . A MD3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc5 B FE FE . A FE 300 1_555 C O03 MD3 . A MD3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3T4V 
_atom_sites.fract_transf_matrix[1][1]    0.026976 
_atom_sites.fract_transf_matrix[1][2]    -0.012418 
_atom_sites.fract_transf_matrix[1][3]    -0.005736 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028059 
_atom_sites.fract_transf_matrix[2][3]    -0.004048 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026035 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 300 300 FE FE . 
C 3 MD3 A 1 401 401 MD3 MD3 . 
D 4 GOL A 1 2000 2000 GOL GOL . 
E 5 HOH A 1 1 1 HOH HOH . 
E 5 HOH A 2 2 2 HOH HOH . 
E 5 HOH A 3 3 3 HOH HOH . 
E 5 HOH A 4 4 4 HOH HOH . 
E 5 HOH A 5 5 5 HOH HOH . 
E 5 HOH A 6 6 6 HOH HOH . 
E 5 HOH A 7 7 7 HOH HOH . 
E 5 HOH A 8 8 8 HOH HOH . 
E 5 HOH A 9 9 9 HOH HOH . 
E 5 HOH A 10 10 10 HOH HOH . 
E 5 HOH A 11 217 11 HOH HOH . 
E 5 HOH A 12 218 12 HOH HOH . 
E 5 HOH A 13 219 219 HOH HOH . 
E 5 HOH A 14 220 220 HOH HOH . 
E 5 HOH A 15 221 221 HOH HOH . 
E 5 HOH A 16 222 222 HOH HOH . 
E 5 HOH A 17 223 13 HOH HOH . 
E 5 HOH A 18 224 224 HOH HOH . 
E 5 HOH A 19 225 14 HOH HOH . 
E 5 HOH A 20 226 226 HOH HOH . 
E 5 HOH A 21 227 227 HOH HOH . 
E 5 HOH A 22 228 228 HOH HOH . 
E 5 HOH A 23 229 229 HOH HOH . 
E 5 HOH A 24 230 230 HOH HOH . 
E 5 HOH A 25 231 15 HOH HOH . 
E 5 HOH A 26 232 232 HOH HOH . 
E 5 HOH A 27 233 233 HOH HOH . 
E 5 HOH A 28 234 234 HOH HOH . 
E 5 HOH A 29 235 235 HOH HOH . 
E 5 HOH A 30 236 236 HOH HOH . 
E 5 HOH A 31 237 237 HOH HOH . 
E 5 HOH A 32 238 16 HOH HOH . 
E 5 HOH A 33 239 239 HOH HOH . 
E 5 HOH A 34 240 240 HOH HOH . 
E 5 HOH A 35 241 241 HOH HOH . 
E 5 HOH A 36 242 242 HOH HOH . 
E 5 HOH A 37 243 243 HOH HOH . 
E 5 HOH A 38 244 244 HOH HOH . 
E 5 HOH A 39 245 17 HOH HOH . 
E 5 HOH A 40 246 18 HOH HOH . 
E 5 HOH A 41 247 247 HOH HOH . 
E 5 HOH A 42 248 248 HOH HOH . 
E 5 HOH A 43 249 249 HOH HOH . 
E 5 HOH A 44 250 19 HOH HOH . 
E 5 HOH A 45 251 251 HOH HOH . 
E 5 HOH A 46 252 20 HOH HOH . 
E 5 HOH A 47 253 253 HOH HOH . 
E 5 HOH A 48 254 21 HOH HOH . 
E 5 HOH A 49 255 255 HOH HOH . 
E 5 HOH A 50 256 22 HOH HOH . 
E 5 HOH A 51 257 257 HOH HOH . 
E 5 HOH A 52 258 23 HOH HOH . 
E 5 HOH A 53 259 24 HOH HOH . 
E 5 HOH A 54 260 260 HOH HOH . 
E 5 HOH A 55 261 261 HOH HOH . 
E 5 HOH A 56 262 262 HOH HOH . 
E 5 HOH A 57 263 25 HOH HOH . 
E 5 HOH A 58 264 26 HOH HOH . 
E 5 HOH A 59 265 265 HOH HOH . 
E 5 HOH A 60 266 266 HOH HOH . 
E 5 HOH A 61 267 267 HOH HOH . 
E 5 HOH A 62 268 268 HOH HOH . 
E 5 HOH A 63 269 27 HOH HOH . 
E 5 HOH A 64 270 28 HOH HOH . 
E 5 HOH A 65 271 271 HOH HOH . 
E 5 HOH A 66 272 29 HOH HOH . 
E 5 HOH A 67 273 30 HOH HOH . 
E 5 HOH A 68 274 274 HOH HOH . 
E 5 HOH A 69 275 275 HOH HOH . 
E 5 HOH A 70 276 31 HOH HOH . 
E 5 HOH A 71 277 32 HOH HOH . 
E 5 HOH A 72 278 278 HOH HOH . 
E 5 HOH A 73 279 279 HOH HOH . 
E 5 HOH A 74 280 280 HOH HOH . 
E 5 HOH A 75 281 281 HOH HOH . 
E 5 HOH A 76 282 282 HOH HOH . 
E 5 HOH A 77 283 33 HOH HOH . 
E 5 HOH A 78 284 34 HOH HOH . 
E 5 HOH A 79 285 35 HOH HOH . 
E 5 HOH A 80 286 36 HOH HOH . 
E 5 HOH A 81 287 37 HOH HOH . 
E 5 HOH A 82 288 38 HOH HOH . 
E 5 HOH A 83 289 39 HOH HOH . 
E 5 HOH A 84 290 40 HOH HOH . 
E 5 HOH A 85 291 41 HOH HOH . 
E 5 HOH A 86 292 42 HOH HOH . 
E 5 HOH A 87 293 43 HOH HOH . 
E 5 HOH A 88 294 44 HOH HOH . 
E 5 HOH A 89 295 45 HOH HOH . 
E 5 HOH A 90 296 46 HOH HOH . 
E 5 HOH A 91 297 47 HOH HOH . 
E 5 HOH A 92 298 48 HOH HOH . 
E 5 HOH A 93 299 49 HOH HOH . 
E 5 HOH A 94 301 50 HOH HOH . 
E 5 HOH A 95 302 51 HOH HOH . 
E 5 HOH A 96 303 52 HOH HOH . 
E 5 HOH A 97 304 53 HOH HOH . 
E 5 HOH A 98 305 54 HOH HOH . 
E 5 HOH A 99 306 55 HOH HOH . 
E 5 HOH A 100 307 56 HOH HOH . 
E 5 HOH A 101 308 57 HOH HOH . 
E 5 HOH A 102 309 58 HOH HOH . 
E 5 HOH A 103 310 59 HOH HOH . 
E 5 HOH A 104 311 60 HOH HOH . 
E 5 HOH A 105 312 61 HOH HOH . 
E 5 HOH A 106 313 62 HOH HOH . 
E 5 HOH A 107 314 63 HOH HOH . 
E 5 HOH A 108 315 64 HOH HOH . 
E 5 HOH A 109 316 65 HOH HOH . 
E 5 HOH A 110 317 66 HOH HOH . 
E 5 HOH A 111 318 67 HOH HOH . 
E 5 HOH A 112 319 68 HOH HOH . 
E 5 HOH A 113 320 69 HOH HOH . 
E 5 HOH A 114 321 70 HOH HOH . 
E 5 HOH A 115 322 71 HOH HOH . 
E 5 HOH A 116 323 72 HOH HOH . 
E 5 HOH A 117 324 73 HOH HOH . 
E 5 HOH A 118 325 74 HOH HOH . 
E 5 HOH A 119 326 75 HOH HOH . 
E 5 HOH A 120 327 76 HOH HOH . 
E 5 HOH A 121 328 77 HOH HOH . 
E 5 HOH A 122 329 79 HOH HOH . 
E 5 HOH A 123 330 80 HOH HOH . 
E 5 HOH A 124 331 81 HOH HOH . 
E 5 HOH A 125 332 82 HOH HOH . 
E 5 HOH A 126 333 83 HOH HOH . 
E 5 HOH A 127 334 84 HOH HOH . 
E 5 HOH A 128 335 85 HOH HOH . 
E 5 HOH A 129 336 86 HOH HOH . 
E 5 HOH A 130 337 87 HOH HOH . 
E 5 HOH A 131 338 88 HOH HOH . 
E 5 HOH A 132 339 89 HOH HOH . 
E 5 HOH A 133 340 90 HOH HOH . 
E 5 HOH A 134 341 91 HOH HOH . 
E 5 HOH A 135 342 92 HOH HOH . 
E 5 HOH A 136 343 93 HOH HOH . 
E 5 HOH A 137 344 94 HOH HOH . 
E 5 HOH A 138 345 95 HOH HOH . 
E 5 HOH A 139 346 96 HOH HOH . 
E 5 HOH A 140 347 97 HOH HOH . 
E 5 HOH A 141 348 98 HOH HOH . 
E 5 HOH A 142 349 100 HOH HOH . 
E 5 HOH A 143 350 101 HOH HOH . 
E 5 HOH A 144 351 102 HOH HOH . 
E 5 HOH A 145 352 103 HOH HOH . 
E 5 HOH A 146 353 104 HOH HOH . 
E 5 HOH A 147 354 105 HOH HOH . 
E 5 HOH A 148 355 106 HOH HOH . 
E 5 HOH A 149 356 107 HOH HOH . 
E 5 HOH A 150 357 108 HOH HOH . 
E 5 HOH A 151 358 109 HOH HOH . 
E 5 HOH A 152 359 110 HOH HOH . 
E 5 HOH A 153 360 111 HOH HOH . 
E 5 HOH A 154 361 112 HOH HOH . 
E 5 HOH A 155 362 113 HOH HOH . 
E 5 HOH A 156 363 114 HOH HOH . 
E 5 HOH A 157 364 115 HOH HOH . 
E 5 HOH A 158 365 116 HOH HOH . 
E 5 HOH A 159 366 117 HOH HOH . 
E 5 HOH A 160 367 118 HOH HOH . 
E 5 HOH A 161 368 119 HOH HOH . 
E 5 HOH A 162 369 120 HOH HOH . 
E 5 HOH A 163 370 121 HOH HOH . 
E 5 HOH A 164 371 122 HOH HOH . 
E 5 HOH A 165 372 123 HOH HOH . 
E 5 HOH A 166 373 124 HOH HOH . 
E 5 HOH A 167 374 125 HOH HOH . 
E 5 HOH A 168 375 126 HOH HOH . 
E 5 HOH A 169 376 127 HOH HOH . 
E 5 HOH A 170 377 128 HOH HOH . 
E 5 HOH A 171 378 129 HOH HOH . 
E 5 HOH A 172 379 130 HOH HOH . 
E 5 HOH A 173 380 132 HOH HOH . 
E 5 HOH A 174 381 133 HOH HOH . 
E 5 HOH A 175 382 134 HOH HOH . 
E 5 HOH A 176 383 137 HOH HOH . 
E 5 HOH A 177 384 138 HOH HOH . 
E 5 HOH A 178 385 139 HOH HOH . 
E 5 HOH A 179 386 141 HOH HOH . 
E 5 HOH A 180 387 142 HOH HOH . 
E 5 HOH A 181 388 143 HOH HOH . 
E 5 HOH A 182 389 144 HOH HOH . 
E 5 HOH A 183 390 145 HOH HOH . 
E 5 HOH A 184 391 148 HOH HOH . 
E 5 HOH A 185 392 150 HOH HOH . 
E 5 HOH A 186 393 153 HOH HOH . 
E 5 HOH A 187 394 155 HOH HOH . 
E 5 HOH A 188 395 156 HOH HOH . 
E 5 HOH A 189 396 158 HOH HOH . 
E 5 HOH A 190 397 161 HOH HOH . 
E 5 HOH A 191 398 162 HOH HOH . 
E 5 HOH A 192 399 164 HOH HOH . 
E 5 HOH A 193 400 170 HOH HOH . 
E 5 HOH A 194 402 171 HOH HOH . 
E 5 HOH A 195 403 172 HOH HOH . 
E 5 HOH A 196 404 173 HOH HOH . 
E 5 HOH A 197 405 175 HOH HOH . 
E 5 HOH A 198 406 177 HOH HOH . 
E 5 HOH A 199 407 178 HOH HOH . 
E 5 HOH A 200 408 179 HOH HOH . 
E 5 HOH A 201 409 180 HOH HOH . 
E 5 HOH A 202 410 181 HOH HOH . 
E 5 HOH A 203 411 184 HOH HOH . 
E 5 HOH A 204 412 185 HOH HOH . 
E 5 HOH A 205 413 188 HOH HOH . 
E 5 HOH A 206 414 192 HOH HOH . 
E 5 HOH A 207 415 204 HOH HOH . 
E 5 HOH A 208 416 209 HOH HOH . 
E 5 HOH A 209 417 210 HOH HOH . 
E 5 HOH A 210 418 212 HOH HOH . 
E 5 HOH A 211 419 213 HOH HOH . 
E 5 HOH A 212 420 215 HOH HOH . 
E 5 HOH A 213 421 216 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -3.163 -5.225 4.317 1 69.52 ? C1 GOL 2000 A 1 
HETATM 2 O O1 GOL . . . D 4 -4.522 -4.858 4.447 1 69.07 ? O1 GOL 2000 A 1 
HETATM 3 C C2 GOL . . . D 4 -2.286 -4.193 5.019 1 69.52 ? C2 GOL 2000 A 1 
HETATM 4 O O2 GOL . . . D 4 -2.92 -3.75 6.195 1 70.42 ? O2 GOL 2000 A 1 
HETATM 5 C C3 GOL . . . D 4 -0.949 -4.8 5.417 1 69.31 ? C3 GOL 2000 A 1 
HETATM 6 O O3 GOL . . . D 4 -0.344 -3.958 6.375 1 69.02 ? O3 GOL 2000 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#