data_3T5O # _model_server_result.job_id aDKvHvzyLIcM9p3VWV97tw _model_server_result.datetime_utc '2025-09-08 11:09:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1008}' # _entry.id 3T5O # _exptl.entry_id 3T5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T5O _cell.length_a 146.81 _cell.length_b 180.15 _cell.length_c 60.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 BGC FUC C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1001 NAG 2 n B NAG 2 B 2 NAG A 1002 NAG 3 n C FUC 1 C 1 FUC A 1005 FUC 3 n C BGC 2 C 2 BGC A 1006 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 1 1_555 A SG CYS 40 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 3 A CYS 3 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 14 A CYS 14 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 18 A CYS 18 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 A SG CYS 61 A CYS 61 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 72 A CYS 72 1_555 A SG CYS 106 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 A SG CYS 75 A CYS 75 1_555 A SG CYS 112 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 A SG CYS 119 A CYS 119 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 A SG CYS 125 A CYS 125 1_555 A SG CYS 143 A CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 A SG CYS 137 A CYS 137 1_555 A SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 A SG CYS 159 A CYS 159 1_555 A SG CYS 197 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf12 A SG CYS 378 A CYS 378 1_555 A SG CYS 399 A CYS 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf13 A SG CYS 478 A CYS 478 1_555 A SG CYS 602 A CYS 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf14 A SG CYS 500 A CYS 500 1_555 A SG CYS 549 A CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf15 A SG CYS 502 A CYS 502 1_555 A SG CYS 518 A CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 A SG CYS 505 A CYS 505 1_555 A SG CYS 520 A CYS 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf17 A SG CYS 522 A CYS 522 1_555 A SG CYS 531 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf18 A SG CYS 556 A CYS 556 1_555 A SG CYS 590 A CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf19 A SG CYS 568 A CYS 568 1_555 A SG CYS 580 A CYS 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 A SG CYS 623 A CYS 623 1_555 A SG CYS 665 A CYS 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 A SG CYS 651 A CYS 651 1_555 A SG CYS 678 A CYS 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf22 A SG CYS 683 A CYS 683 1_555 A SG CYS 725 A CYS 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf23 A SG CYS 711 A CYS 711 1_555 A SG CYS 740 A CYS 740 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf24 A SG CYS 752 A CYS 752 1_555 A SG CYS 763 A CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? disulf ? disulf25 A SG CYS 765 A CYS 765 1_555 A SG CYS 802 A CYS 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf26 A SG CYS 772 A CYS 772 1_555 A SG CYS 795 A CYS 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf27 A SG CYS 780 A CYS 780 1_555 A SG CYS 816 A CYS 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf28 A SG CYS 841 A CYS 841 1_555 A SG CYS 852 A CYS 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf29 A SG CYS 846 A CYS 846 1_555 A SG CYS 859 A CYS 859 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf30 A SG CYS 861 A CYS 861 1_555 A SG CYS 898 A CYS 898 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf31 A SG CYS 867 A CYS 867 1_555 A SG CYS 891 A CYS 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf32 A SG CYS 876 A CYS 876 1_555 A SG CYS 911 A CYS 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A CD1 TRP 8 A TRP 8 1_555 G C1 MAN . A MAN 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A CD1 TRP 11 A TRP 11 1_555 F C1 MAN . A MAN 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A OG1 THR 17 A THR 17 1_555 C C1 FUC . C FUC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 303 A ASN 303 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale5 A OG1 THR 371 A THR 371 1_555 E C1 FUL . A FUL 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale6 A CD1 TRP 547 A TRP 547 1_555 I C1 MAN . A MAN 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale7 A CD1 TRP 550 A TRP 550 1_555 H C1 MAN . A MAN 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 C O3 FUC . C FUC 1 1_555 C C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A O LEU 135 A LEU 135 1_555 D CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc2 A OD1 ASN 138 A ASN 138 1_555 D CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 A O GLU 140 A GLU 140 1_555 D CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc4 A OD2 ASP 142 A ASP 142 1_555 D CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc5 A OD1 ASP 148 A ASP 148 1_555 D CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 A OE1 GLU 149 A GLU 149 1_555 D CD CD . A CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 286 n n C1 O1 MAN sing 287 n n C1 O5 MAN sing 288 n n C1 H1 MAN sing 289 n n C2 C3 MAN sing 290 n n C2 O2 MAN sing 291 n n C2 H2 MAN sing 292 n n C3 C4 MAN sing 293 n n C3 O3 MAN sing 294 n n C3 H3 MAN sing 295 n n C4 C5 MAN sing 296 n n C4 O4 MAN sing 297 n n C4 H4 MAN sing 298 n n C5 C6 MAN sing 299 n n C5 O5 MAN sing 300 n n C5 H5 MAN sing 301 n n C6 O6 MAN sing 302 n n C6 H61 MAN sing 303 n n C6 H62 MAN sing 304 n n O1 HO1 MAN sing 305 n n O2 HO2 MAN sing 306 n n O3 HO3 MAN sing 307 n n O4 HO4 MAN sing 308 n n O6 HO6 MAN sing 309 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3T5O _atom_sites.fract_transf_matrix[1][1] 0.006812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CD A 1 1001 1000 CD CD . E 5 FUL A 1 1004 1003 FUL FUL . F 6 MAN A 1 1007 1007 MAN MAN . G 6 MAN A 1 1008 1008 MAN MAN . H 6 MAN A 1 1009 1009 MAN MAN . I 6 MAN A 1 1010 1010 MAN MAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . G 6 18.737 -2.324 19.931 1 72.58 ? C1 MAN 1008 A 1 HETATM 2 C C2 MAN . . . G 6 19.902 -3.044 20.573 1 75.55 ? C2 MAN 1008 A 1 HETATM 3 C C3 MAN . . . G 6 21.012 -3.001 19.564 1 79.06 ? C3 MAN 1008 A 1 HETATM 4 C C4 MAN . . . G 6 20.463 -3.417 18.239 1 58.74 ? C4 MAN 1008 A 1 HETATM 5 C C5 MAN . . . G 6 19.566 -2.333 17.733 1 64.17 ? C5 MAN 1008 A 1 HETATM 6 C C6 MAN . . . G 6 18.358 -2.897 17.015 1 71.9 ? C6 MAN 1008 A 1 HETATM 7 O O2 MAN . . . G 6 19.613 -4.401 20.824 1 78.56 ? O2 MAN 1008 A 1 HETATM 8 O O3 MAN . . . G 6 21.961 -3.958 19.926 1 107.58 ? O3 MAN 1008 A 1 HETATM 9 O O4 MAN . . . G 6 21.565 -3.338 17.402 1 81.98 ? O4 MAN 1008 A 1 HETATM 10 O O5 MAN . . . G 6 19.187 -1.563 18.833 1 70.93 ? O5 MAN 1008 A 1 HETATM 11 O O6 MAN . . . G 6 18.23 -2.277 15.758 1 68.14 ? O6 MAN 1008 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #