data_3T7Z # _model_server_result.job_id YNSIaF04JTjddrR9qyKwZQ _model_server_result.datetime_utc '2024-11-07 08:52:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":121}' # _entry.id 3T7Z # _exptl.entry_id 3T7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3T7Z _cell.length_a 45.695 _cell.length_b 86.511 _cell.length_c 129.387 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 21 A SER 21 1_555 C NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A OD2 ASP 25 A ASP 25 1_555 C NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc3 A OD1 ASP 25 A ASP 25 1_555 C NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3T7Z _atom_sites.fract_transf_matrix[1][1] 0.021884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 120 1 ACT ACT . C 3 NA A 1 121 1 NA NA . D 4 GOL A 1 1816 1816 GOL GOL . E 5 HOH A 1 122 1 HOH HOH . E 5 HOH A 2 123 2 HOH HOH . E 5 HOH A 3 124 3 HOH HOH . E 5 HOH A 4 125 4 HOH HOH . E 5 HOH A 5 126 5 HOH HOH . E 5 HOH A 6 127 6 HOH HOH . E 5 HOH A 7 128 7 HOH HOH . E 5 HOH A 8 129 8 HOH HOH . E 5 HOH A 9 130 9 HOH HOH . E 5 HOH A 10 131 10 HOH HOH . E 5 HOH A 11 132 11 HOH HOH . E 5 HOH A 12 133 12 HOH HOH . E 5 HOH A 13 134 13 HOH HOH . E 5 HOH A 14 135 14 HOH HOH . E 5 HOH A 15 136 15 HOH HOH . E 5 HOH A 16 137 16 HOH HOH . E 5 HOH A 17 138 17 HOH HOH . E 5 HOH A 18 139 18 HOH HOH . E 5 HOH A 19 140 19 HOH HOH . E 5 HOH A 20 141 20 HOH HOH . E 5 HOH A 21 142 21 HOH HOH . E 5 HOH A 22 143 22 HOH HOH . E 5 HOH A 23 144 23 HOH HOH . E 5 HOH A 24 145 24 HOH HOH . E 5 HOH A 25 146 25 HOH HOH . E 5 HOH A 26 147 26 HOH HOH . E 5 HOH A 27 148 27 HOH HOH . E 5 HOH A 28 149 28 HOH HOH . E 5 HOH A 29 150 29 HOH HOH . E 5 HOH A 30 151 30 HOH HOH . E 5 HOH A 31 152 31 HOH HOH . E 5 HOH A 32 153 32 HOH HOH . E 5 HOH A 33 154 33 HOH HOH . E 5 HOH A 34 155 34 HOH HOH . E 5 HOH A 35 156 35 HOH HOH . E 5 HOH A 36 157 36 HOH HOH . E 5 HOH A 37 158 37 HOH HOH . E 5 HOH A 38 159 38 HOH HOH . E 5 HOH A 39 160 39 HOH HOH . E 5 HOH A 40 161 40 HOH HOH . E 5 HOH A 41 162 41 HOH HOH . E 5 HOH A 42 163 42 HOH HOH . E 5 HOH A 43 164 43 HOH HOH . E 5 HOH A 44 165 44 HOH HOH . E 5 HOH A 45 166 45 HOH HOH . E 5 HOH A 46 167 46 HOH HOH . E 5 HOH A 47 168 47 HOH HOH . E 5 HOH A 48 169 48 HOH HOH . E 5 HOH A 49 170 49 HOH HOH . E 5 HOH A 50 171 50 HOH HOH . E 5 HOH A 51 172 51 HOH HOH . E 5 HOH A 52 173 53 HOH HOH . E 5 HOH A 53 174 55 HOH HOH . E 5 HOH A 54 175 56 HOH HOH . E 5 HOH A 55 176 57 HOH HOH . E 5 HOH A 56 177 60 HOH HOH . E 5 HOH A 57 178 61 HOH HOH . E 5 HOH A 58 179 62 HOH HOH . E 5 HOH A 59 180 63 HOH HOH . E 5 HOH A 60 181 64 HOH HOH . E 5 HOH A 61 182 65 HOH HOH . E 5 HOH A 62 183 66 HOH HOH . E 5 HOH A 63 184 67 HOH HOH . E 5 HOH A 64 185 70 HOH HOH . E 5 HOH A 65 186 71 HOH HOH . E 5 HOH A 66 187 72 HOH HOH . E 5 HOH A 67 188 73 HOH HOH . E 5 HOH A 68 189 74 HOH HOH . E 5 HOH A 69 190 75 HOH HOH . E 5 HOH A 70 191 76 HOH HOH . E 5 HOH A 71 192 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -7.573 _atom_site.Cartn_y -3.945 _atom_site.Cartn_z -29.805 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 121 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #