data_3T84 # _model_server_result.job_id TRyHq40K9tSa1hNv3Fkf6g _model_server_result.datetime_utc '2024-11-21 21:19:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3T84 # _exptl.entry_id 3T84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.271 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 4-O-acetyl-6-O-sulfamoyl-alpha-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.7 _cell.angle_gamma 90 _cell.entry_id 3T84 _cell.length_a 42.46 _cell.length_b 41.43 _cell.length_c 72.08 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc4 B ZN ZN . A ZN 261 1_555 C N5F SG6 . A SG6 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc5 B ZN ZN . A ZN 261 1_555 C S5C SG6 . A SG6 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? # _chem_comp.formula 'C8 H15 N O9 S' _chem_comp.formula_weight 301.271 _chem_comp.id SG6 _chem_comp.mon_nstd_flag n _chem_comp.name 4-O-acetyl-6-O-sulfamoyl-alpha-D-galactopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 4-O-acetyl-6-O-sulfamoyl-alpha-D-galactose;4-O-acetyl-6-O-sulfamoyl-D-galactose;4-O-acetyl-6-O-sulfamoyl-galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O5 SG6 sing 290 n n C1 C2 SG6 sing 291 n n C1 O1 SG6 sing 292 n n O5 C5 SG6 sing 293 n n C2 C3 SG6 sing 294 n n C2 O2 SG6 sing 295 n n C3 C4 SG6 sing 296 n n C3 O3 SG6 sing 297 n n C4 C5 SG6 sing 298 n n C4 O4 SG6 sing 299 n n C5 C6 SG6 sing 300 n n O4 C4C SG6 sing 301 n n C4B C4C SG6 sing 302 n n C4C O4D SG6 doub 303 n n C6 O6 SG6 sing 304 n n O6 S5C SG6 sing 305 n n S5C O5D SG6 doub 306 n n S5C O5E SG6 doub 307 n n S5C N5F SG6 sing 308 n n C1 H1 SG6 sing 309 n n C2 H2 SG6 sing 310 n n C3 H3 SG6 sing 311 n n C4 H4 SG6 sing 312 n n C5 H5 SG6 sing 313 n n O1 HO1 SG6 sing 314 n n O2 HO2 SG6 sing 315 n n O3 HO3 SG6 sing 316 n n C4B H4B SG6 sing 317 n n C4B H4BA SG6 sing 318 n n C4B H4BB SG6 sing 319 n n C6 H61 SG6 sing 320 n n C6 H62 SG6 sing 321 n n N5F HN5F SG6 sing 322 n n N5F HN5A SG6 sing 323 n n # _atom_sites.entry_id 3T84 _atom_sites.fract_transf_matrix[1][1] 0.023552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006179 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 261 261 ZN ZN . C 3 SG6 A 1 300 300 SG6 LIG . D 4 HOH A 1 262 1 HOH HOH . D 4 HOH A 2 263 2 HOH HOH . D 4 HOH A 3 264 3 HOH HOH . D 4 HOH A 4 265 4 HOH HOH . D 4 HOH A 5 266 5 HOH HOH . D 4 HOH A 6 267 6 HOH HOH . D 4 HOH A 7 268 7 HOH HOH . D 4 HOH A 8 269 8 HOH HOH . D 4 HOH A 9 270 9 HOH HOH . D 4 HOH A 10 271 10 HOH HOH . D 4 HOH A 11 272 11 HOH HOH . D 4 HOH A 12 273 12 HOH HOH . D 4 HOH A 13 274 13 HOH HOH . D 4 HOH A 14 275 14 HOH HOH . D 4 HOH A 15 276 15 HOH HOH . D 4 HOH A 16 277 16 HOH HOH . D 4 HOH A 17 278 17 HOH HOH . D 4 HOH A 18 279 18 HOH HOH . D 4 HOH A 19 280 19 HOH HOH . D 4 HOH A 20 281 20 HOH HOH . D 4 HOH A 21 282 21 HOH HOH . D 4 HOH A 22 283 22 HOH HOH . D 4 HOH A 23 284 23 HOH HOH . D 4 HOH A 24 285 24 HOH HOH . D 4 HOH A 25 286 25 HOH HOH . D 4 HOH A 26 287 26 HOH HOH . D 4 HOH A 27 288 27 HOH HOH . D 4 HOH A 28 289 28 HOH HOH . D 4 HOH A 29 290 29 HOH HOH . D 4 HOH A 30 291 30 HOH HOH . D 4 HOH A 31 292 31 HOH HOH . D 4 HOH A 32 293 32 HOH HOH . D 4 HOH A 33 294 33 HOH HOH . D 4 HOH A 34 295 34 HOH HOH . D 4 HOH A 35 296 35 HOH HOH . D 4 HOH A 36 297 36 HOH HOH . D 4 HOH A 37 298 37 HOH HOH . D 4 HOH A 38 299 38 HOH HOH . D 4 HOH A 39 301 39 HOH HOH . D 4 HOH A 40 302 40 HOH HOH . D 4 HOH A 41 303 41 HOH HOH . D 4 HOH A 42 304 42 HOH HOH . D 4 HOH A 43 305 43 HOH HOH . D 4 HOH A 44 306 44 HOH HOH . D 4 HOH A 45 307 45 HOH HOH . D 4 HOH A 46 308 46 HOH HOH . D 4 HOH A 47 309 47 HOH HOH . D 4 HOH A 48 310 48 HOH HOH . D 4 HOH A 49 311 49 HOH HOH . D 4 HOH A 50 312 50 HOH HOH . D 4 HOH A 51 313 51 HOH HOH . D 4 HOH A 52 314 52 HOH HOH . D 4 HOH A 53 315 53 HOH HOH . D 4 HOH A 54 316 54 HOH HOH . D 4 HOH A 55 317 55 HOH HOH . D 4 HOH A 56 318 56 HOH HOH . D 4 HOH A 57 319 57 HOH HOH . D 4 HOH A 58 320 58 HOH HOH . D 4 HOH A 59 321 59 HOH HOH . D 4 HOH A 60 322 60 HOH HOH . D 4 HOH A 61 323 61 HOH HOH . D 4 HOH A 62 324 62 HOH HOH . D 4 HOH A 63 325 63 HOH HOH . D 4 HOH A 64 326 64 HOH HOH . D 4 HOH A 65 327 65 HOH HOH . D 4 HOH A 66 328 66 HOH HOH . D 4 HOH A 67 329 67 HOH HOH . D 4 HOH A 68 330 68 HOH HOH . D 4 HOH A 69 331 69 HOH HOH . D 4 HOH A 70 332 70 HOH HOH . D 4 HOH A 71 333 71 HOH HOH . D 4 HOH A 72 334 72 HOH HOH . D 4 HOH A 73 335 73 HOH HOH . D 4 HOH A 74 336 74 HOH HOH . D 4 HOH A 75 337 75 HOH HOH . D 4 HOH A 76 338 76 HOH HOH . D 4 HOH A 77 339 77 HOH HOH . D 4 HOH A 78 340 78 HOH HOH . D 4 HOH A 79 341 79 HOH HOH . D 4 HOH A 80 342 80 HOH HOH . D 4 HOH A 81 343 81 HOH HOH . D 4 HOH A 82 344 82 HOH HOH . D 4 HOH A 83 345 83 HOH HOH . D 4 HOH A 84 346 84 HOH HOH . D 4 HOH A 85 347 85 HOH HOH . D 4 HOH A 86 348 86 HOH HOH . D 4 HOH A 87 349 87 HOH HOH . D 4 HOH A 88 350 88 HOH HOH . D 4 HOH A 89 351 89 HOH HOH . D 4 HOH A 90 352 90 HOH HOH . D 4 HOH A 91 353 91 HOH HOH . D 4 HOH A 92 354 92 HOH HOH . D 4 HOH A 93 355 93 HOH HOH . D 4 HOH A 94 356 94 HOH HOH . D 4 HOH A 95 357 95 HOH HOH . D 4 HOH A 96 358 96 HOH HOH . D 4 HOH A 97 359 97 HOH HOH . D 4 HOH A 98 360 98 HOH HOH . D 4 HOH A 99 361 99 HOH HOH . D 4 HOH A 100 362 100 HOH HOH . D 4 HOH A 101 363 101 HOH HOH . D 4 HOH A 102 364 102 HOH HOH . D 4 HOH A 103 365 103 HOH HOH . D 4 HOH A 104 366 104 HOH HOH . D 4 HOH A 105 367 105 HOH HOH . D 4 HOH A 106 368 106 HOH HOH . D 4 HOH A 107 369 107 HOH HOH . D 4 HOH A 108 370 108 HOH HOH . D 4 HOH A 109 371 109 HOH HOH . D 4 HOH A 110 372 110 HOH HOH . D 4 HOH A 111 373 111 HOH HOH . D 4 HOH A 112 374 112 HOH HOH . D 4 HOH A 113 375 113 HOH HOH . D 4 HOH A 114 376 114 HOH HOH . D 4 HOH A 115 377 115 HOH HOH . D 4 HOH A 116 378 116 HOH HOH . D 4 HOH A 117 379 117 HOH HOH . D 4 HOH A 118 380 118 HOH HOH . D 4 HOH A 119 381 119 HOH HOH . D 4 HOH A 120 382 120 HOH HOH . D 4 HOH A 121 383 121 HOH HOH . D 4 HOH A 122 384 122 HOH HOH . D 4 HOH A 123 385 123 HOH HOH . D 4 HOH A 124 386 124 HOH HOH . D 4 HOH A 125 387 125 HOH HOH . D 4 HOH A 126 388 126 HOH HOH . D 4 HOH A 127 389 127 HOH HOH . D 4 HOH A 128 390 128 HOH HOH . D 4 HOH A 129 391 129 HOH HOH . D 4 HOH A 130 392 130 HOH HOH . D 4 HOH A 131 393 131 HOH HOH . D 4 HOH A 132 394 132 HOH HOH . D 4 HOH A 133 395 133 HOH HOH . D 4 HOH A 134 396 134 HOH HOH . D 4 HOH A 135 397 135 HOH HOH . D 4 HOH A 136 398 136 HOH HOH . D 4 HOH A 137 399 137 HOH HOH . D 4 HOH A 138 400 138 HOH HOH . D 4 HOH A 139 401 139 HOH HOH . D 4 HOH A 140 402 140 HOH HOH . D 4 HOH A 141 403 141 HOH HOH . D 4 HOH A 142 404 142 HOH HOH . D 4 HOH A 143 405 143 HOH HOH . D 4 HOH A 144 406 144 HOH HOH . D 4 HOH A 145 407 145 HOH HOH . D 4 HOH A 146 408 146 HOH HOH . D 4 HOH A 147 409 147 HOH HOH . D 4 HOH A 148 410 148 HOH HOH . D 4 HOH A 149 411 149 HOH HOH . D 4 HOH A 150 412 150 HOH HOH . D 4 HOH A 151 413 151 HOH HOH . D 4 HOH A 152 414 152 HOH HOH . D 4 HOH A 153 415 153 HOH HOH . D 4 HOH A 154 416 154 HOH HOH . D 4 HOH A 155 417 155 HOH HOH . D 4 HOH A 156 418 156 HOH HOH . D 4 HOH A 157 419 157 HOH HOH . D 4 HOH A 158 420 158 HOH HOH . D 4 HOH A 159 421 159 HOH HOH . D 4 HOH A 160 422 160 HOH HOH . D 4 HOH A 161 423 161 HOH HOH . D 4 HOH A 162 424 162 HOH HOH . D 4 HOH A 163 425 163 HOH HOH . D 4 HOH A 164 426 164 HOH HOH . D 4 HOH A 165 427 165 HOH HOH . D 4 HOH A 166 428 166 HOH HOH . D 4 HOH A 167 429 167 HOH HOH . D 4 HOH A 168 430 168 HOH HOH . D 4 HOH A 169 431 169 HOH HOH . D 4 HOH A 170 432 170 HOH HOH . D 4 HOH A 171 433 171 HOH HOH . D 4 HOH A 172 434 172 HOH HOH . D 4 HOH A 173 435 173 HOH HOH . D 4 HOH A 174 436 174 HOH HOH . D 4 HOH A 175 437 175 HOH HOH . D 4 HOH A 176 438 176 HOH HOH . D 4 HOH A 177 439 177 HOH HOH . D 4 HOH A 178 440 178 HOH HOH . D 4 HOH A 179 441 179 HOH HOH . D 4 HOH A 180 442 180 HOH HOH . D 4 HOH A 181 443 181 HOH HOH . D 4 HOH A 182 444 182 HOH HOH . D 4 HOH A 183 445 183 HOH HOH . D 4 HOH A 184 446 184 HOH HOH . D 4 HOH A 185 447 185 HOH HOH . D 4 HOH A 186 448 186 HOH HOH . D 4 HOH A 187 449 187 HOH HOH . D 4 HOH A 188 450 188 HOH HOH . D 4 HOH A 189 451 189 HOH HOH . D 4 HOH A 190 452 190 HOH HOH . D 4 HOH A 191 453 191 HOH HOH . D 4 HOH A 192 454 192 HOH HOH . D 4 HOH A 193 455 193 HOH HOH . D 4 HOH A 194 456 194 HOH HOH . D 4 HOH A 195 457 195 HOH HOH . D 4 HOH A 196 458 196 HOH HOH . D 4 HOH A 197 459 197 HOH HOH . D 4 HOH A 198 460 198 HOH HOH . D 4 HOH A 199 461 199 HOH HOH . D 4 HOH A 200 462 200 HOH HOH . D 4 HOH A 201 463 201 HOH HOH . D 4 HOH A 202 464 202 HOH HOH . D 4 HOH A 203 465 203 HOH HOH . D 4 HOH A 204 466 204 HOH HOH . D 4 HOH A 205 467 205 HOH HOH . D 4 HOH A 206 468 206 HOH HOH . D 4 HOH A 207 469 207 HOH HOH . D 4 HOH A 208 470 208 HOH HOH . D 4 HOH A 209 471 209 HOH HOH . D 4 HOH A 210 472 210 HOH HOH . D 4 HOH A 211 473 211 HOH HOH . D 4 HOH A 212 474 212 HOH HOH . D 4 HOH A 213 475 213 HOH HOH . D 4 HOH A 214 476 214 HOH HOH . D 4 HOH A 215 477 215 HOH HOH . D 4 HOH A 216 478 216 HOH HOH . D 4 HOH A 217 479 217 HOH HOH . D 4 HOH A 218 480 218 HOH HOH . D 4 HOH A 219 481 219 HOH HOH . D 4 HOH A 220 482 220 HOH HOH . D 4 HOH A 221 483 221 HOH HOH . D 4 HOH A 222 484 222 HOH HOH . D 4 HOH A 223 485 223 HOH HOH . D 4 HOH A 224 486 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SG6 . . . C 3 16.828 -0.916 11.737 1 10.93 ? C1 SG6 300 A 1 HETATM 2 O O5 SG6 . . . C 3 16.778 -0.736 13.136 1 9.9 ? O5 SG6 300 A 1 HETATM 3 C C2 SG6 . . . C 3 16.306 0.235 11.009 1 10.82 ? C2 SG6 300 A 1 HETATM 4 C C3 SG6 . . . C 3 16.972 1.49 11.279 1 14.54 ? C3 SG6 300 A 1 HETATM 5 C C4 SG6 . . . C 3 17.029 1.747 12.734 1 15.52 ? C4 SG6 300 A 1 HETATM 6 C C5 SG6 . . . C 3 17.389 0.503 13.548 1 13.03 ? C5 SG6 300 A 1 HETATM 7 O O1 SG6 . . . C 3 18.102 -1.275 11.262 1 9.62 ? O1 SG6 300 A 1 HETATM 8 O O2 SG6 . . . C 3 16.209 -0.049 9.646 1 10.64 ? O2 SG6 300 A 1 HETATM 9 O O3 SG6 . . . C 3 16.518 2.541 10.469 1 14.47 ? O3 SG6 300 A 1 HETATM 10 O O4 SG6 . . . C 3 15.898 2.435 13.223 1 14.1 ? O4 SG6 300 A 1 HETATM 11 C C4B SG6 . . . C 3 14.85 4.077 14.602 1 15.74 ? C4B SG6 300 A 1 HETATM 12 C C4C SG6 . . . C 3 16.051 3.448 13.975 1 24.75 ? C4C SG6 300 A 1 HETATM 13 O O4D SG6 . . . C 3 17.199 3.812 14.364 1 19.16 ? O4D SG6 300 A 1 HETATM 14 C C6 SG6 . . . C 3 17.432 0.612 15.07 1 13.26 ? C6 SG6 300 A 1 HETATM 15 O O6 SG6 . . . C 3 16.223 0.977 15.623 1 13.86 ? O6 SG6 300 A 1 HETATM 16 S S5C SG6 . . . C 3 15.438 0.096 16.513 1 8.56 ? S5C SG6 300 A 1 HETATM 17 O O5D SG6 . . . C 3 14.074 0.418 16.95 1 9.04 ? O5D SG6 300 A 1 HETATM 18 O O5E SG6 . . . C 3 16.057 0.677 17.703 1 7.24 ? O5E SG6 300 A 1 HETATM 19 N N5F SG6 . . . C 3 15.814 -1.429 16.449 1 6.32 ? N5F SG6 300 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #