data_3T85 # _model_server_result.job_id -Gtbbmo38ZfcXPgatdPs_g _model_server_result.datetime_utc '2024-11-22 18:51:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3T85 # _exptl.entry_id 3T85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.308 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 3,4-di-O-acetyl-6-O-sulfamoyl-alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.73 _cell.angle_gamma 90 _cell.entry_id 3T85 _cell.length_a 42.466 _cell.length_b 41.419 _cell.length_c 72.156 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 B ZN ZN . A ZN 261 1_555 C N5F SG7 . A SG7 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C10 H17 N O10 S' _chem_comp.formula_weight 343.308 _chem_comp.id SG7 _chem_comp.mon_nstd_flag n _chem_comp.name 3,4-di-O-acetyl-6-O-sulfamoyl-alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 3,4-di-O-acetyl-6-O-sulfamoyl-alpha-D-mannose;3,4-di-O-acetyl-6-O-sulfamoyl-D-mannose;3,4-di-O-acetyl-6-O-sulfamoyl-mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O5 SG7 sing 290 n n C1 C2 SG7 sing 291 n n C1 O1 SG7 sing 292 n n O5 C5 SG7 sing 293 n n C2 C3 SG7 sing 294 n n C2 O2 SG7 sing 295 n n C3 C4 SG7 sing 296 n n C3 O3 SG7 sing 297 n n C4 C5 SG7 sing 298 n n C4 O4 SG7 sing 299 n n C5 C6 SG7 sing 300 n n O3 C3B SG7 sing 301 n n C3B C3C SG7 sing 302 n n C3B O3D SG7 doub 303 n n O4 C4C SG7 sing 304 n n C4B C4C SG7 sing 305 n n C4C O4D SG7 doub 306 n n C6 O6 SG7 sing 307 n n O6 S5C SG7 sing 308 n n S5C O5D SG7 doub 309 n n S5C O5E SG7 doub 310 n n S5C N5F SG7 sing 311 n n C1 H1 SG7 sing 312 n n C2 H2 SG7 sing 313 n n C3 H3 SG7 sing 314 n n C4 H4 SG7 sing 315 n n C5 H5 SG7 sing 316 n n O1 HO1 SG7 sing 317 n n O2 HO2 SG7 sing 318 n n C3C H3C SG7 sing 319 n n C3C H3CA SG7 sing 320 n n C3C H3CB SG7 sing 321 n n C4B H4B SG7 sing 322 n n C4B H4BA SG7 sing 323 n n C4B H4BB SG7 sing 324 n n C6 H61 SG7 sing 325 n n C6 H62 SG7 sing 326 n n N5F HN5F SG7 sing 327 n n N5F HN5A SG7 sing 328 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SG7 DManp[3Ac,4Ac]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SG7 3-acetyl-4-acetyl-a-D-mannopyranose 'COMMON NAME' GMML 1 # _atom_sites.entry_id 3T85 _atom_sites.fract_transf_matrix[1][1] 0.023548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00619 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 261 261 ZN ZN . C 3 SG7 A 1 300 300 SG7 LIG . D 4 HOH A 1 262 1 HOH HOH . D 4 HOH A 2 263 2 HOH HOH . D 4 HOH A 3 264 3 HOH HOH . D 4 HOH A 4 265 4 HOH HOH . D 4 HOH A 5 266 5 HOH HOH . D 4 HOH A 6 267 6 HOH HOH . D 4 HOH A 7 268 7 HOH HOH . D 4 HOH A 8 269 8 HOH HOH . D 4 HOH A 9 270 9 HOH HOH . D 4 HOH A 10 271 10 HOH HOH . D 4 HOH A 11 272 11 HOH HOH . D 4 HOH A 12 273 12 HOH HOH . D 4 HOH A 13 274 13 HOH HOH . D 4 HOH A 14 275 14 HOH HOH . D 4 HOH A 15 276 15 HOH HOH . D 4 HOH A 16 277 16 HOH HOH . D 4 HOH A 17 278 17 HOH HOH . D 4 HOH A 18 279 18 HOH HOH . D 4 HOH A 19 280 19 HOH HOH . D 4 HOH A 20 281 20 HOH HOH . D 4 HOH A 21 282 21 HOH HOH . D 4 HOH A 22 283 22 HOH HOH . D 4 HOH A 23 284 23 HOH HOH . D 4 HOH A 24 285 24 HOH HOH . D 4 HOH A 25 286 25 HOH HOH . D 4 HOH A 26 287 26 HOH HOH . D 4 HOH A 27 288 27 HOH HOH . D 4 HOH A 28 289 28 HOH HOH . D 4 HOH A 29 290 29 HOH HOH . D 4 HOH A 30 291 30 HOH HOH . D 4 HOH A 31 292 31 HOH HOH . D 4 HOH A 32 293 32 HOH HOH . D 4 HOH A 33 294 33 HOH HOH . D 4 HOH A 34 295 34 HOH HOH . D 4 HOH A 35 296 35 HOH HOH . D 4 HOH A 36 297 36 HOH HOH . D 4 HOH A 37 298 37 HOH HOH . D 4 HOH A 38 299 38 HOH HOH . D 4 HOH A 39 301 39 HOH HOH . D 4 HOH A 40 302 40 HOH HOH . D 4 HOH A 41 303 41 HOH HOH . D 4 HOH A 42 304 42 HOH HOH . D 4 HOH A 43 305 43 HOH HOH . D 4 HOH A 44 306 44 HOH HOH . D 4 HOH A 45 307 45 HOH HOH . D 4 HOH A 46 308 46 HOH HOH . D 4 HOH A 47 309 47 HOH HOH . D 4 HOH A 48 310 48 HOH HOH . D 4 HOH A 49 311 49 HOH HOH . D 4 HOH A 50 312 50 HOH HOH . D 4 HOH A 51 313 51 HOH HOH . D 4 HOH A 52 314 52 HOH HOH . D 4 HOH A 53 315 53 HOH HOH . D 4 HOH A 54 316 54 HOH HOH . D 4 HOH A 55 317 55 HOH HOH . D 4 HOH A 56 318 56 HOH HOH . D 4 HOH A 57 319 57 HOH HOH . D 4 HOH A 58 320 58 HOH HOH . D 4 HOH A 59 321 59 HOH HOH . D 4 HOH A 60 322 60 HOH HOH . D 4 HOH A 61 323 61 HOH HOH . D 4 HOH A 62 324 62 HOH HOH . D 4 HOH A 63 325 63 HOH HOH . D 4 HOH A 64 326 64 HOH HOH . D 4 HOH A 65 327 65 HOH HOH . D 4 HOH A 66 328 66 HOH HOH . D 4 HOH A 67 329 67 HOH HOH . D 4 HOH A 68 330 68 HOH HOH . D 4 HOH A 69 331 69 HOH HOH . D 4 HOH A 70 332 70 HOH HOH . D 4 HOH A 71 333 71 HOH HOH . D 4 HOH A 72 334 72 HOH HOH . D 4 HOH A 73 335 73 HOH HOH . D 4 HOH A 74 336 74 HOH HOH . D 4 HOH A 75 337 75 HOH HOH . D 4 HOH A 76 338 76 HOH HOH . D 4 HOH A 77 339 77 HOH HOH . D 4 HOH A 78 340 78 HOH HOH . D 4 HOH A 79 341 79 HOH HOH . D 4 HOH A 80 342 80 HOH HOH . D 4 HOH A 81 343 81 HOH HOH . D 4 HOH A 82 344 82 HOH HOH . D 4 HOH A 83 345 83 HOH HOH . D 4 HOH A 84 346 84 HOH HOH . D 4 HOH A 85 347 85 HOH HOH . D 4 HOH A 86 348 86 HOH HOH . D 4 HOH A 87 349 87 HOH HOH . D 4 HOH A 88 350 88 HOH HOH . D 4 HOH A 89 351 89 HOH HOH . D 4 HOH A 90 352 90 HOH HOH . D 4 HOH A 91 353 91 HOH HOH . D 4 HOH A 92 354 92 HOH HOH . D 4 HOH A 93 355 93 HOH HOH . D 4 HOH A 94 356 94 HOH HOH . D 4 HOH A 95 357 95 HOH HOH . D 4 HOH A 96 358 96 HOH HOH . D 4 HOH A 97 359 97 HOH HOH . D 4 HOH A 98 360 98 HOH HOH . D 4 HOH A 99 361 99 HOH HOH . D 4 HOH A 100 362 100 HOH HOH . D 4 HOH A 101 363 101 HOH HOH . D 4 HOH A 102 364 102 HOH HOH . D 4 HOH A 103 365 103 HOH HOH . D 4 HOH A 104 366 104 HOH HOH . D 4 HOH A 105 367 105 HOH HOH . D 4 HOH A 106 368 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SG7 . . . C 3 16.91 1.937 11.63 1 14.88 ? C1 SG7 300 A 1 HETATM 2 O O5 SG7 . . . C 3 16.883 2.064 13.07 1 14.89 ? O5 SG7 300 A 1 HETATM 3 C C2 SG7 . . . C 3 16.568 3.185 10.855 1 9.14 ? C2 SG7 300 A 1 HETATM 4 C C3 SG7 . . . C 3 17.04 4.428 11.442 1 17.04 ? C3 SG7 300 A 1 HETATM 5 C C4 SG7 . . . C 3 16.844 4.503 12.87 1 14.57 ? C4 SG7 300 A 1 HETATM 6 C C5 SG7 . . . C 3 17.438 3.284 13.529 1 15.69 ? C5 SG7 300 A 1 HETATM 7 O O1 SG7 . . . C 3 18.125 1.439 11.235 1 12.65 ? O1 SG7 300 A 1 HETATM 8 O O2 SG7 . . . C 3 15.163 3.243 10.754 1 10.92 ? O2 SG7 300 A 1 HETATM 9 O O3 SG7 . . . C 3 16.321 5.511 10.881 1 25.2 ? O3 SG7 300 A 1 HETATM 10 C C3B SG7 . . . C 3 16.915 6.312 10.094 1 26.36 ? C3B SG7 300 A 1 HETATM 11 C C3C SG7 . . . C 3 16.204 7.537 9.578 1 18.39 ? C3C SG7 300 A 1 HETATM 12 O O3D SG7 . . . C 3 18.101 6.084 9.78 1 23.9 ? O3D SG7 300 A 1 HETATM 13 O O4 SG7 . . . C 3 17.515 5.62 13.39 1 17.01 ? O4 SG7 300 A 1 HETATM 14 C C4B SG7 . . . C 3 17.802 7.854 14.291 1 15.8 ? C4B SG7 300 A 1 HETATM 15 C C4C SG7 . . . C 3 16.933 6.694 13.856 1 16.11 ? C4C SG7 300 A 1 HETATM 16 O O4D SG7 . . . C 3 15.694 6.905 13.637 1 18.52 ? O4D SG7 300 A 1 HETATM 17 C C6 SG7 . . . C 3 17.416 2.959 15.009 1 16.2 ? C6 SG7 300 A 1 HETATM 18 O O6 SG7 . . . C 3 16.332 3.516 15.688 1 16.22 ? O6 SG7 300 A 1 HETATM 19 S S5C SG7 . . . C 3 15.42 2.641 16.477 1 8.49 ? S5C SG7 300 A 1 HETATM 20 O O5D SG7 . . . C 3 14.032 3.026 16.79 1 8.64 ? O5D SG7 300 A 1 HETATM 21 O O5E SG7 . . . C 3 15.942 3.163 17.748 1 5.06 ? O5E SG7 300 A 1 HETATM 22 N N5F SG7 . . . C 3 15.814 1.146 16.614 1 4.83 ? N5F SG7 300 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #