data_3T8A
#
_model_server_result.job_id            '_T5y3zaGxEXvzF52uBq48w' 
_model_server_result.datetime_utc      '2024-10-14 16:19:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t8a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":600}' 
#
_entry.id    3T8A 
#
_exptl.entry_id    3T8A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              954.663 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'o-succinylbenzoyl-N-coenzyme A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3T8A 
_cell.length_a            87.133 
_cell.length_b            87.133 
_cell.length_c            414.84 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T8A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 43.5665 75.459392 -69.14 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C32 H45 N8 O20 P3' 
_chem_comp.formula_weight    954.663 
_chem_comp.id                S0N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'o-succinylbenzoyl-N-coenzyme A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 C01 S0N sing 277 n n 
C01 H01 S0N sing 278 n n 
C01 H01A S0N sing 279 n n 
C01 H01B S0N sing 280 n n 
C04 C02 S0N sing 281 n n 
C36 C02 S0N sing 282 n n 
C02 C03 S0N sing 283 n n 
C03 H03 S0N sing 284 n n 
C03 H03A S0N sing 285 n n 
C03 H03B S0N sing 286 n n 
O05 C04 S0N sing 287 n n 
C04 H04 S0N sing 288 n n 
C04 H04A S0N sing 289 n n 
P06 O05 S0N sing 290 n n 
O08 P06 S0N doub 291 n n 
O07 P06 S0N sing 292 n n 
O09 P06 S0N sing 293 n n 
O07 HO07 S0N sing 294 n n 
P10 O09 S0N sing 295 n n 
O11 P10 S0N doub 296 n n 
P10 O13 S0N sing 297 n n 
P10 O12 S0N sing 298 n n 
O12 HO12 S0N sing 299 n n 
C14 O13 S0N sing 300 n n 
C14 C15 S0N sing 301 n n 
C14 H14 S0N sing 302 n n 
C14 H14A S0N sing 303 n n 
C15 C30 S0N sing 304 n n 
C15 O16 S0N sing 305 n n 
C15 H15 S0N sing 306 n n 
O16 C17 S0N sing 307 n n 
C28 C17 S0N sing 308 n n 
C17 N18 S0N sing 309 n n 
C17 H17 S0N sing 310 n n 
N18 C19 S0N sing 311 n y 
N18 C27 S0N sing 312 n y 
C19 N20 S0N doub 313 n y 
C19 H19 S0N sing 314 n n 
N20 C21 S0N sing 315 n y 
C27 C21 S0N doub 316 n y 
C21 C22 S0N sing 317 n y 
C22 N24 S0N doub 318 n y 
C22 N23 S0N sing 319 n n 
N23 HN23 S0N sing 320 n n 
N23 HN2A S0N sing 321 n n 
C25 N24 S0N sing 322 n y 
N26 C25 S0N doub 323 n y 
C25 H25 S0N sing 324 n n 
C27 N26 S0N sing 325 n y 
C30 C28 S0N sing 326 n n 
C28 O29 S0N sing 327 n n 
C28 H28 S0N sing 328 n n 
O29 HO29 S0N sing 329 n n 
O31 C30 S0N sing 330 n n 
C30 H30 S0N sing 331 n n 
P32 O31 S0N sing 332 n n 
O35 P32 S0N doub 333 n n 
O33 P32 S0N sing 334 n n 
P32 O34 S0N sing 335 n n 
O33 HO33 S0N sing 336 n n 
O34 HO34 S0N sing 337 n n 
O37 C36 S0N sing 338 n n 
C36 C38 S0N sing 339 n n 
C36 H36 S0N sing 340 n n 
O37 HO37 S0N sing 341 n n 
C38 N40 S0N sing 342 n n 
C38 O39 S0N doub 343 n n 
N40 C41 S0N sing 344 n n 
N40 HN40 S0N sing 345 n n 
C41 C42 S0N sing 346 n n 
C41 H41 S0N sing 347 n n 
C41 H41A S0N sing 348 n n 
C42 C43 S0N sing 349 n n 
C42 H42 S0N sing 350 n n 
C42 H42A S0N sing 351 n n 
C43 O44 S0N doub 352 n n 
C43 N45 S0N sing 353 n n 
N45 C46 S0N sing 354 n n 
N45 HN45 S0N sing 355 n n 
C46 C47 S0N sing 356 n n 
C46 H46 S0N sing 357 n n 
C46 H46A S0N sing 358 n n 
C47 N48 S0N sing 359 n n 
C47 H47 S0N sing 360 n n 
C47 H47A S0N sing 361 n n 
N48 C49 S0N sing 362 n n 
N48 HN48 S0N sing 363 n n 
O50 C49 S0N doub 364 n n 
C49 C51 S0N sing 365 n n 
C51 C52 S0N sing 366 n n 
C51 H51 S0N sing 367 n n 
C51 H51A S0N sing 368 n n 
C52 C53 S0N sing 369 n n 
C52 H52 S0N sing 370 n n 
C52 H52A S0N sing 371 n n 
C53 O54 S0N doub 372 n n 
C53 C55 S0N sing 373 n n 
C60 C55 S0N doub 374 n y 
C55 C56 S0N sing 375 n y 
C56 C57 S0N doub 376 n y 
C56 H56 S0N sing 377 n n 
C58 C57 S0N sing 378 n y 
C57 H57 S0N sing 379 n n 
C59 C58 S0N doub 380 n y 
C58 H58 S0N sing 381 n n 
C60 C59 S0N sing 382 n y 
C59 H59 S0N sing 383 n n 
C61 C60 S0N sing 384 n n 
O62 C61 S0N doub 385 n n 
O63 C61 S0N sing 386 n n 
O63 HO63 S0N sing 387 n n 
#
_atom_sites.entry_id                     3T8A 
_atom_sites.fract_transf_matrix[1][1]    0.011477 
_atom_sites.fract_transf_matrix[1][2]    0.006626 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013252 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002411 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 S0N B 1 500 500 S0N S0N . 
E 2 S0N C 1 600 600 S0N S0N . 
F 3 HOH A 1 315 10 HOH HOH . 
F 3 HOH A 2 316 12 HOH HOH . 
F 3 HOH A 3 317 13 HOH HOH . 
F 3 HOH A 4 318 15 HOH HOH . 
F 3 HOH A 5 319 17 HOH HOH . 
F 3 HOH A 6 320 27 HOH HOH . 
F 3 HOH A 7 321 28 HOH HOH . 
F 3 HOH A 8 322 29 HOH HOH . 
F 3 HOH A 9 323 35 HOH HOH . 
F 3 HOH A 10 324 44 HOH HOH . 
F 3 HOH A 11 325 50 HOH HOH . 
F 3 HOH A 12 326 54 HOH HOH . 
F 3 HOH A 13 327 63 HOH HOH . 
F 3 HOH A 14 328 70 HOH HOH . 
F 3 HOH A 15 329 75 HOH HOH . 
F 3 HOH A 16 330 89 HOH HOH . 
F 3 HOH A 17 331 92 HOH HOH . 
F 3 HOH A 18 332 94 HOH HOH . 
F 3 HOH A 19 333 97 HOH HOH . 
F 3 HOH A 20 334 98 HOH HOH . 
F 3 HOH A 21 335 99 HOH HOH . 
F 3 HOH A 22 336 102 HOH HOH . 
F 3 HOH A 23 337 105 HOH HOH . 
F 3 HOH A 24 338 110 HOH HOH . 
F 3 HOH A 25 339 113 HOH HOH . 
F 3 HOH A 26 340 116 HOH HOH . 
F 3 HOH A 27 341 120 HOH HOH . 
F 3 HOH A 28 342 124 HOH HOH . 
F 3 HOH A 29 343 141 HOH HOH . 
F 3 HOH A 30 344 146 HOH HOH . 
F 3 HOH A 31 345 152 HOH HOH . 
F 3 HOH A 32 346 188 HOH HOH . 
F 3 HOH A 33 347 192 HOH HOH . 
F 3 HOH A 34 348 209 HOH HOH . 
F 3 HOH A 35 349 211 HOH HOH . 
F 3 HOH A 36 350 232 HOH HOH . 
F 3 HOH A 37 351 256 HOH HOH . 
F 3 HOH A 38 352 279 HOH HOH . 
G 3 HOH B 1 315 1 HOH HOH . 
G 3 HOH B 2 316 2 HOH HOH . 
G 3 HOH B 3 317 5 HOH HOH . 
G 3 HOH B 4 318 7 HOH HOH . 
G 3 HOH B 5 319 8 HOH HOH . 
G 3 HOH B 6 320 9 HOH HOH . 
G 3 HOH B 7 321 14 HOH HOH . 
G 3 HOH B 8 322 18 HOH HOH . 
G 3 HOH B 9 323 21 HOH HOH . 
G 3 HOH B 10 324 22 HOH HOH . 
G 3 HOH B 11 325 24 HOH HOH . 
G 3 HOH B 12 326 26 HOH HOH . 
G 3 HOH B 13 327 30 HOH HOH . 
G 3 HOH B 14 328 33 HOH HOH . 
G 3 HOH B 15 329 36 HOH HOH . 
G 3 HOH B 16 330 37 HOH HOH . 
G 3 HOH B 17 331 38 HOH HOH . 
G 3 HOH B 18 332 39 HOH HOH . 
G 3 HOH B 19 333 40 HOH HOH . 
G 3 HOH B 20 334 41 HOH HOH . 
G 3 HOH B 21 335 47 HOH HOH . 
G 3 HOH B 22 336 48 HOH HOH . 
G 3 HOH B 23 337 57 HOH HOH . 
G 3 HOH B 24 338 58 HOH HOH . 
G 3 HOH B 25 339 64 HOH HOH . 
G 3 HOH B 26 340 71 HOH HOH . 
G 3 HOH B 27 341 78 HOH HOH . 
G 3 HOH B 28 342 82 HOH HOH . 
G 3 HOH B 29 343 90 HOH HOH . 
G 3 HOH B 30 344 96 HOH HOH . 
G 3 HOH B 31 345 109 HOH HOH . 
G 3 HOH B 32 346 130 HOH HOH . 
G 3 HOH B 33 347 144 HOH HOH . 
G 3 HOH B 34 348 148 HOH HOH . 
G 3 HOH B 35 349 156 HOH HOH . 
G 3 HOH B 36 350 158 HOH HOH . 
G 3 HOH B 37 351 170 HOH HOH . 
G 3 HOH B 38 352 182 HOH HOH . 
G 3 HOH B 39 353 184 HOH HOH . 
G 3 HOH B 40 354 189 HOH HOH . 
G 3 HOH B 41 355 218 HOH HOH . 
G 3 HOH B 42 356 310 HOH HOH . 
H 3 HOH C 1 315 6 HOH HOH . 
H 3 HOH C 2 316 11 HOH HOH . 
H 3 HOH C 3 317 16 HOH HOH . 
H 3 HOH C 4 318 19 HOH HOH . 
H 3 HOH C 5 319 23 HOH HOH . 
H 3 HOH C 6 320 25 HOH HOH . 
H 3 HOH C 7 321 31 HOH HOH . 
H 3 HOH C 8 322 43 HOH HOH . 
H 3 HOH C 9 323 49 HOH HOH . 
H 3 HOH C 10 324 53 HOH HOH . 
H 3 HOH C 11 325 61 HOH HOH . 
H 3 HOH C 12 326 62 HOH HOH . 
H 3 HOH C 13 327 66 HOH HOH . 
H 3 HOH C 14 328 76 HOH HOH . 
H 3 HOH C 15 329 84 HOH HOH . 
H 3 HOH C 16 330 87 HOH HOH . 
H 3 HOH C 17 331 88 HOH HOH . 
H 3 HOH C 18 332 101 HOH HOH . 
H 3 HOH C 19 333 106 HOH HOH . 
H 3 HOH C 20 334 127 HOH HOH . 
H 3 HOH C 21 335 128 HOH HOH . 
H 3 HOH C 22 336 129 HOH HOH . 
H 3 HOH C 23 337 161 HOH HOH . 
H 3 HOH C 24 338 187 HOH HOH . 
H 3 HOH C 25 339 200 HOH HOH . 
H 3 HOH C 26 340 204 HOH HOH . 
H 3 HOH C 27 341 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 S0N . . . E 2 8.985 10.117 -52.821 1 54.27 ? C01 S0N 600 C 1 
HETATM 2 C C02 S0N . . . E 2 9.505 8.89 -52.06 1 60.32 ? C02 S0N 600 C 1 
HETATM 3 C C03 S0N . . . E 2 11.005 8.925 -51.716 1 52.32 ? C03 S0N 600 C 1 
HETATM 4 C C04 S0N . . . E 2 9.34 7.669 -53.007 1 65.42 ? C04 S0N 600 C 1 
HETATM 5 O O05 S0N . . . E 2 8.142 7.795 -53.761 0.79 71.76 ? O05 S0N 600 C 1 
HETATM 6 P P06 S0N . . . E 2 7.773 6.713 -54.915 0.49 79.41 ? P06 S0N 600 C 1 
HETATM 7 O O07 S0N . . . E 2 8.899 6.646 -55.999 0.85 69.12 ? O07 S0N 600 C 1 
HETATM 8 O O08 S0N . . . E 2 6.428 7.147 -55.598 0.87 78.39 ? O08 S0N 600 C 1 
HETATM 9 O O09 S0N . . . E 2 7.601 5.247 -54.229 0.97 74.53 ? O09 S0N 600 C 1 
HETATM 10 P P10 S0N . . . E 2 6.237 4.881 -53.445 0.69 79.55 ? P10 S0N 600 C 1 
HETATM 11 O O11 S0N . . . E 2 5.276 4.092 -54.382 0.71 83.15 ? O11 S0N 600 C 1 
HETATM 12 O O12 S0N . . . E 2 5.56 6.202 -52.948 0.86 79.3 ? O12 S0N 600 C 1 
HETATM 13 O O13 S0N . . . E 2 6.578 3.967 -52.195 0.84 77.28 ? O13 S0N 600 C 1 
HETATM 14 C C14 S0N . . . E 2 7.483 2.854 -52.325 0.78 76.67 ? C14 S0N 600 C 1 
HETATM 15 C C15 S0N . . . E 2 7.333 1.714 -51.255 0.65 74.33 ? C15 S0N 600 C 1 
HETATM 16 O O16 S0N . . . E 2 8.261 2.008 -50.137 0.41 72.82 ? O16 S0N 600 C 1 
HETATM 17 C C17 S0N . . . E 2 7.476 2.446 -48.963 0.54 72.05 ? C17 S0N 600 C 1 
HETATM 18 N N18 S0N . . . E 2 8.121 3.722 -48.539 0.65 70.15 ? N18 S0N 600 C 1 
HETATM 19 C C19 S0N . . . E 2 8.664 4.678 -49.332 0.85 68.42 ? C19 S0N 600 C 1 
HETATM 20 N N20 S0N . . . E 2 9.129 5.709 -48.502 1 61.57 ? N20 S0N 600 C 1 
HETATM 21 C C21 S0N . . . E 2 8.849 5.358 -47.181 0.57 65.78 ? C21 S0N 600 C 1 
HETATM 22 C C22 S0N . . . E 2 9.09 6.015 -45.935 0.5 64.74 ? C22 S0N 600 C 1 
HETATM 23 N N23 S0N . . . E 2 9.753 7.318 -45.889 0.64 60.96 ? N23 S0N 600 C 1 
HETATM 24 N N24 S0N . . . E 2 8.698 5.421 -44.774 0.6 64.82 ? N24 S0N 600 C 1 
HETATM 25 C C25 S0N . . . E 2 8.079 4.211 -44.797 0.54 66.26 ? C25 S0N 600 C 1 
HETATM 26 N N26 S0N . . . E 2 7.839 3.553 -46.036 0.84 65.13 ? N26 S0N 600 C 1 
HETATM 27 C C27 S0N . . . E 2 8.232 4.146 -47.194 1 64.49 ? C27 S0N 600 C 1 
HETATM 28 C C28 S0N . . . E 2 5.996 2.42 -49.32 0.39 78.39 ? C28 S0N 600 C 1 
HETATM 29 O O29 S0N . . . E 2 5.22 1.702 -48.288 0.66 79.08 ? O29 S0N 600 C 1 
HETATM 30 C C30 S0N . . . E 2 5.896 1.698 -50.672 0.59 76.58 ? C30 S0N 600 C 1 
HETATM 31 O O31 S0N . . . E 2 5.364 0.359 -50.476 0.89 75.57 ? O31 S0N 600 C 1 
HETATM 32 P P32 S0N . . . E 2 3.943 -0.044 -51.158 0.6 82.07 ? P32 S0N 600 C 1 
HETATM 33 O O33 S0N . . . E 2 2.735 0.537 -50.352 0.96 81.92 ? O33 S0N 600 C 1 
HETATM 34 O O34 S0N . . . E 2 3.856 -1.598 -51.183 0.82 83.6 ? O34 S0N 600 C 1 
HETATM 35 O O35 S0N . . . E 2 3.892 0.505 -52.618 0.64 84.92 ? O35 S0N 600 C 1 
HETATM 36 C C36 S0N . . . E 2 8.565 8.805 -50.832 1 57.68 ? C36 S0N 600 C 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           36 
#