data_3T8J # _model_server_result.job_id y1xEVCYCPjd2qcwwKU9spQ _model_server_result.datetime_utc '2025-02-05 07:48:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3T8J # _exptl.entry_id 3T8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3T8J _cell.length_a 194.94 _cell.length_b 194.94 _cell.length_c 42.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -97.47 168.822992 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -14.286667 4 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -97.47 168.822992 -14.286667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 9 A ASP 9 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 A OD1 ASP 14 A ASP 14 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A O ILE 121 A ILE 121 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 A OG SER 122 A SER 122 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc5 B NA NA . A NA 401 1_555 C O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3T8J _atom_sites.fract_transf_matrix[1][1] 0.00513 _atom_sites.fract_transf_matrix[1][2] 0.002962 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 401 NA NA . C 3 HOH A 1 312 1 HOH HOH . C 3 HOH A 2 313 2 HOH HOH . C 3 HOH A 3 314 3 HOH HOH . C 3 HOH A 4 315 4 HOH HOH . C 3 HOH A 5 316 5 HOH HOH . C 3 HOH A 6 317 6 HOH HOH . C 3 HOH A 7 318 7 HOH HOH . C 3 HOH A 8 319 8 HOH HOH . C 3 HOH A 9 320 9 HOH HOH . C 3 HOH A 10 321 10 HOH HOH . C 3 HOH A 11 322 11 HOH HOH . C 3 HOH A 12 323 12 HOH HOH . C 3 HOH A 13 324 13 HOH HOH . C 3 HOH A 14 325 14 HOH HOH . C 3 HOH A 15 326 15 HOH HOH . C 3 HOH A 16 327 16 HOH HOH . C 3 HOH A 17 328 17 HOH HOH . C 3 HOH A 18 329 18 HOH HOH . C 3 HOH A 19 330 19 HOH HOH . C 3 HOH A 20 331 20 HOH HOH . C 3 HOH A 21 332 21 HOH HOH . C 3 HOH A 22 333 22 HOH HOH . C 3 HOH A 23 334 23 HOH HOH . C 3 HOH A 24 335 24 HOH HOH . C 3 HOH A 25 336 25 HOH HOH . C 3 HOH A 26 337 26 HOH HOH . C 3 HOH A 27 338 27 HOH HOH . C 3 HOH A 28 339 28 HOH HOH . C 3 HOH A 29 340 29 HOH HOH . C 3 HOH A 30 341 30 HOH HOH . C 3 HOH A 31 342 31 HOH HOH . C 3 HOH A 32 343 32 HOH HOH . C 3 HOH A 33 344 33 HOH HOH . C 3 HOH A 34 345 34 HOH HOH . C 3 HOH A 35 346 35 HOH HOH . C 3 HOH A 36 347 36 HOH HOH . C 3 HOH A 37 348 37 HOH HOH . C 3 HOH A 38 349 38 HOH HOH . C 3 HOH A 39 350 39 HOH HOH . C 3 HOH A 40 351 40 HOH HOH . C 3 HOH A 41 352 41 HOH HOH . C 3 HOH A 42 353 42 HOH HOH . C 3 HOH A 43 354 43 HOH HOH . C 3 HOH A 44 355 44 HOH HOH . C 3 HOH A 45 356 45 HOH HOH . C 3 HOH A 46 357 46 HOH HOH . C 3 HOH A 47 358 47 HOH HOH . C 3 HOH A 48 359 48 HOH HOH . C 3 HOH A 49 360 49 HOH HOH . C 3 HOH A 50 361 50 HOH HOH . C 3 HOH A 51 362 51 HOH HOH . C 3 HOH A 52 363 52 HOH HOH . C 3 HOH A 53 364 53 HOH HOH . C 3 HOH A 54 365 54 HOH HOH . C 3 HOH A 55 366 55 HOH HOH . C 3 HOH A 56 367 56 HOH HOH . C 3 HOH A 57 368 57 HOH HOH . C 3 HOH A 58 369 58 HOH HOH . C 3 HOH A 59 370 59 HOH HOH . C 3 HOH A 60 371 60 HOH HOH . C 3 HOH A 61 372 61 HOH HOH . C 3 HOH A 62 373 62 HOH HOH . C 3 HOH A 63 374 63 HOH HOH . C 3 HOH A 64 375 64 HOH HOH . C 3 HOH A 65 376 65 HOH HOH . C 3 HOH A 66 377 66 HOH HOH . C 3 HOH A 67 378 67 HOH HOH . C 3 HOH A 68 379 68 HOH HOH . C 3 HOH A 69 380 69 HOH HOH . C 3 HOH A 70 381 70 HOH HOH . C 3 HOH A 71 382 71 HOH HOH . C 3 HOH A 72 383 72 HOH HOH . C 3 HOH A 73 384 73 HOH HOH . C 3 HOH A 74 385 74 HOH HOH . C 3 HOH A 75 386 75 HOH HOH . C 3 HOH A 76 387 76 HOH HOH . C 3 HOH A 77 388 77 HOH HOH . C 3 HOH A 78 389 78 HOH HOH . C 3 HOH A 79 390 79 HOH HOH . C 3 HOH A 80 391 80 HOH HOH . C 3 HOH A 81 392 81 HOH HOH . C 3 HOH A 82 393 82 HOH HOH . C 3 HOH A 83 394 83 HOH HOH . C 3 HOH A 84 395 84 HOH HOH . C 3 HOH A 85 396 85 HOH HOH . C 3 HOH A 86 397 86 HOH HOH . C 3 HOH A 87 398 87 HOH HOH . C 3 HOH A 88 399 88 HOH HOH . C 3 HOH A 89 400 89 HOH HOH . C 3 HOH A 90 402 90 HOH HOH . C 3 HOH A 91 403 91 HOH HOH . C 3 HOH A 92 404 92 HOH HOH . C 3 HOH A 93 405 93 HOH HOH . C 3 HOH A 94 406 94 HOH HOH . C 3 HOH A 95 407 95 HOH HOH . C 3 HOH A 96 408 96 HOH HOH . C 3 HOH A 97 409 97 HOH HOH . C 3 HOH A 98 410 98 HOH HOH . C 3 HOH A 99 411 99 HOH HOH . C 3 HOH A 100 412 100 HOH HOH . C 3 HOH A 101 413 101 HOH HOH . C 3 HOH A 102 414 102 HOH HOH . C 3 HOH A 103 415 103 HOH HOH . C 3 HOH A 104 416 104 HOH HOH . C 3 HOH A 105 417 105 HOH HOH . C 3 HOH A 106 418 106 HOH HOH . C 3 HOH A 107 419 107 HOH HOH . C 3 HOH A 108 420 108 HOH HOH . C 3 HOH A 109 421 109 HOH HOH . C 3 HOH A 110 422 110 HOH HOH . C 3 HOH A 111 423 111 HOH HOH . C 3 HOH A 112 424 112 HOH HOH . C 3 HOH A 113 425 113 HOH HOH . C 3 HOH A 114 426 114 HOH HOH . C 3 HOH A 115 427 115 HOH HOH . C 3 HOH A 116 428 116 HOH HOH . C 3 HOH A 117 429 117 HOH HOH . C 3 HOH A 118 430 118 HOH HOH . C 3 HOH A 119 431 119 HOH HOH . C 3 HOH A 120 432 120 HOH HOH . C 3 HOH A 121 433 121 HOH HOH . C 3 HOH A 122 434 122 HOH HOH . C 3 HOH A 123 435 123 HOH HOH . C 3 HOH A 124 436 124 HOH HOH . C 3 HOH A 125 437 125 HOH HOH . C 3 HOH A 126 438 126 HOH HOH . C 3 HOH A 127 439 127 HOH HOH . C 3 HOH A 128 440 128 HOH HOH . C 3 HOH A 129 441 129 HOH HOH . C 3 HOH A 130 442 130 HOH HOH . C 3 HOH A 131 443 131 HOH HOH . C 3 HOH A 132 444 132 HOH HOH . C 3 HOH A 133 445 133 HOH HOH . C 3 HOH A 134 446 134 HOH HOH . C 3 HOH A 135 447 135 HOH HOH . C 3 HOH A 136 448 136 HOH HOH . C 3 HOH A 137 449 137 HOH HOH . C 3 HOH A 138 450 138 HOH HOH . C 3 HOH A 139 451 139 HOH HOH . C 3 HOH A 140 452 140 HOH HOH . C 3 HOH A 141 453 141 HOH HOH . C 3 HOH A 142 454 142 HOH HOH . C 3 HOH A 143 455 143 HOH HOH . C 3 HOH A 144 456 144 HOH HOH . C 3 HOH A 145 457 145 HOH HOH . C 3 HOH A 146 458 146 HOH HOH . C 3 HOH A 147 459 147 HOH HOH . C 3 HOH A 148 460 148 HOH HOH . C 3 HOH A 149 461 149 HOH HOH . C 3 HOH A 150 462 150 HOH HOH . C 3 HOH A 151 463 151 HOH HOH . C 3 HOH A 152 464 152 HOH HOH . C 3 HOH A 153 465 153 HOH HOH . C 3 HOH A 154 466 154 HOH HOH . C 3 HOH A 155 467 155 HOH HOH . C 3 HOH A 156 468 156 HOH HOH . C 3 HOH A 157 469 157 HOH HOH . C 3 HOH A 158 470 158 HOH HOH . C 3 HOH A 159 471 159 HOH HOH . C 3 HOH A 160 472 160 HOH HOH . C 3 HOH A 161 473 161 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -21.553 _atom_site.Cartn_y 79.255 _atom_site.Cartn_z 1.326 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #