data_3T8M # _model_server_result.job_id 8cGA5xetp6Avhqgs-anqqg _model_server_result.datetime_utc '2025-08-31 21:18:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3T8M # _exptl.entry_id 3T8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 553.072 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-{2-chloro-4-[(4-methylpiperazin-1-yl)carbonyl]phenyl}-N~2~,N~8~-dimethyl-4,5-dihydrothieno[3,2-d][1]benzoxepine-2,8-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.55 _cell.angle_gamma 90 _cell.entry_id 3T8M _cell.length_a 143.219 _cell.length_b 67.651 _cell.length_c 106.627 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H29 Cl N4 O4 S' _chem_comp.formula_weight 553.072 _chem_comp.id 3T8 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-{2-chloro-4-[(4-methylpiperazin-1-yl)carbonyl]phenyl}-N~2~,N~8~-dimethyl-4,5-dihydrothieno[3,2-d][1]benzoxepine-2,8-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 3T8 sing 1 n n N2 C3 3T8 sing 2 n n C3 O4 3T8 doub 3 n n C3 C5 3T8 sing 4 n n C5 C6 3T8 doub 5 n y C5 C10 3T8 sing 6 n y C6 C7 3T8 sing 7 n y C7 C8 3T8 doub 8 n y C8 C9 3T8 sing 9 n y C8 C15 3T8 sing 10 n n C9 C10 3T8 doub 11 n y C9 O11 3T8 sing 12 n n O11 C12 3T8 sing 13 n n C12 C13 3T8 sing 14 n n C13 C14 3T8 sing 15 n n C14 C15 3T8 doub 16 n y C14 C18 3T8 sing 17 n y C15 S16 3T8 sing 18 n y S16 C17 3T8 sing 19 n y C17 C18 3T8 doub 20 n y C17 C19 3T8 sing 21 n n C19 O20 3T8 doub 22 n n C19 N21 3T8 sing 23 n n N21 C22 3T8 sing 24 n n N21 C23 3T8 sing 25 n n C23 C24 3T8 doub 26 n y C23 C28 3T8 sing 27 n y C24 C25 3T8 sing 28 n y C25 C26 3T8 doub 29 n y C26 C27 3T8 sing 30 n y C26 C30 3T8 sing 31 n n C27 C28 3T8 doub 32 n y C28 CL29 3T8 sing 33 n n C30 O31 3T8 doub 34 n n C30 N32 3T8 sing 35 n n N32 C33 3T8 sing 36 n n N32 C37 3T8 sing 37 n n C33 C34 3T8 sing 38 n n C34 N35 3T8 sing 39 n n N35 C36 3T8 sing 40 n n N35 C38 3T8 sing 41 n n C36 C37 3T8 sing 42 n n C1 H1 3T8 sing 43 n n C1 H1A 3T8 sing 44 n n C1 H1B 3T8 sing 45 n n N2 HN2 3T8 sing 46 n n C6 H6 3T8 sing 47 n n C7 H7 3T8 sing 48 n n C10 H10 3T8 sing 49 n n C12 H12 3T8 sing 50 n n C12 H12A 3T8 sing 51 n n C13 H13 3T8 sing 52 n n C13 H13A 3T8 sing 53 n n C18 H18 3T8 sing 54 n n C22 H22 3T8 sing 55 n n C22 H22A 3T8 sing 56 n n C22 H22B 3T8 sing 57 n n C24 H24 3T8 sing 58 n n C25 H25 3T8 sing 59 n n C27 H27 3T8 sing 60 n n C33 H33 3T8 sing 61 n n C33 H33A 3T8 sing 62 n n C34 H34 3T8 sing 63 n n C34 H34A 3T8 sing 64 n n C36 H36 3T8 sing 65 n n C36 H36A 3T8 sing 66 n n C37 H37 3T8 sing 67 n n C37 H37A 3T8 sing 68 n n C38 H38 3T8 sing 69 n n C38 H38A 3T8 sing 70 n n C38 H38B 3T8 sing 71 n n # _atom_sites.entry_id 3T8M _atom_sites.fract_transf_matrix[1][1] 0.006982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000679 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3T8 A 1 1 1 3T8 3T8 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 1109 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3T8 . . . B 2 13.176 62.61 23.159 1 73.5 ? C1 3T8 1 A 1 HETATM 2 N N2 3T8 . . . B 2 14.611 62.306 23.068 1 87.55 ? N2 3T8 1 A 1 HETATM 3 C C3 3T8 . . . B 2 15.558 63.038 22.409 1 89.08 ? C3 3T8 1 A 1 HETATM 4 O O4 3T8 . . . B 2 15.307 64.069 21.798 1 84.71 ? O4 3T8 1 A 1 HETATM 5 C C5 3T8 . . . B 2 16.969 62.553 22.432 1 89.06 ? C5 3T8 1 A 1 HETATM 6 C C6 3T8 . . . B 2 17.97 63.259 21.746 1 84.27 ? C6 3T8 1 A 1 HETATM 7 C C7 3T8 . . . B 2 19.277 62.798 21.761 1 68.59 ? C7 3T8 1 A 1 HETATM 8 C C8 3T8 . . . B 2 19.649 61.646 22.467 1 70.17 ? C8 3T8 1 A 1 HETATM 9 C C9 3T8 . . . B 2 18.643 60.927 23.155 1 72.48 ? C9 3T8 1 A 1 HETATM 10 C C10 3T8 . . . B 2 17.335 61.388 23.127 1 78.88 ? C10 3T8 1 A 1 HETATM 11 O O11 3T8 . . . B 2 18.981 59.803 23.829 1 71.21 ? O11 3T8 1 A 1 HETATM 12 C C12 3T8 . . . B 2 19.99 59.879 24.813 1 65.37 ? C12 3T8 1 A 1 HETATM 13 C C13 3T8 . . . B 2 21.35 59.449 24.269 1 63.58 ? C13 3T8 1 A 1 HETATM 14 C C14 3T8 . . . B 2 21.87 60.331 23.151 1 75.42 ? C14 3T8 1 A 1 HETATM 15 C C15 3T8 . . . B 2 21.098 61.243 22.416 1 77.93 ? C15 3T8 1 A 1 HETATM 16 S S16 3T8 . . . B 2 22.152 62.01 21.261 1 72.51 ? S16 3T8 1 A 1 HETATM 17 C C17 3T8 . . . B 2 23.604 61.15 21.729 1 85.9 ? C17 3T8 1 A 1 HETATM 18 C C18 3T8 . . . B 2 23.208 60.306 22.749 1 84.5 ? C18 3T8 1 A 1 HETATM 19 C C19 3T8 . . . B 2 24.967 61.28 21.135 1 81.63 ? C19 3T8 1 A 1 HETATM 20 O O20 3T8 . . . B 2 25.817 60.519 21.54 1 77.84 ? O20 3T8 1 A 1 HETATM 21 N N21 3T8 . . . B 2 25.357 62.169 20.149 1 91.4 ? N21 3T8 1 A 1 HETATM 22 C C22 3T8 . . . B 2 26.72 62.128 19.669 1 85.53 ? C22 3T8 1 A 1 HETATM 23 C C23 3T8 . . . B 2 24.521 63.115 19.51 1 93.27 ? C23 3T8 1 A 1 HETATM 24 C C24 3T8 . . . B 2 24.432 64.463 19.877 1 97.68 ? C24 3T8 1 A 1 HETATM 25 C C25 3T8 . . . B 2 23.562 65.312 19.193 1 100.49 ? C25 3T8 1 A 1 HETATM 26 C C26 3T8 . . . B 2 22.743 64.862 18.126 1 102.49 ? C26 3T8 1 A 1 HETATM 27 C C27 3T8 . . . B 2 22.847 63.516 17.766 1 81.99 ? C27 3T8 1 A 1 HETATM 28 C C28 3T8 . . . B 2 23.728 62.687 18.441 1 80.09 ? C28 3T8 1 A 1 HETATM 29 CL CL29 3T8 . . . B 2 23.795 61.029 17.967 1 85.58 ? CL29 3T8 1 A 1 HETATM 30 C C30 3T8 . . . B 2 21.807 65.789 17.409 1 109.05 ? C30 3T8 1 A 1 HETATM 31 O O31 3T8 . . . B 2 22.066 66.176 16.291 1 114.68 ? O31 3T8 1 A 1 HETATM 32 N N32 3T8 . . . B 2 20.656 66.239 17.983 1 103.34 ? N32 3T8 1 A 1 HETATM 33 C C33 3T8 . . . B 2 19.74 67.162 17.281 1 104.78 ? C33 3T8 1 A 1 HETATM 34 C C34 3T8 . . . B 2 19.445 68.354 18.206 1 98.99 ? C34 3T8 1 A 1 HETATM 35 N N35 3T8 . . . B 2 18.818 67.846 19.427 1 105.7 ? N35 3T8 1 A 1 HETATM 36 C C36 3T8 . . . B 2 19.798 67.027 20.159 1 92.43 ? C36 3T8 1 A 1 HETATM 37 C C37 3T8 . . . B 2 20.237 65.818 19.326 1 90.89 ? C37 3T8 1 A 1 HETATM 38 C C38 3T8 . . . B 2 18.357 68.956 20.274 1 116.84 ? C38 3T8 1 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 385 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #