data_3T8O
#
_model_server_result.job_id            9g4tiuLn4MHzuEV1RW1M2Q 
_model_server_result.datetime_utc      '2024-12-02 04:40:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":544}' 
#
_entry.id    3T8O 
#
_exptl.entry_id    3T8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3T8O 
_cell.length_a            55.541 
_cell.length_b            149.808 
_cell.length_c            190.879 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3T8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 332 A ASP 332 1_555 C MG MG . A MG 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc2 B O2B ATP . A ATP 562 1_555 C MG MG . A MG 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc3 B O1G ATP . A ATP 562 1_555 C MG MG . A MG 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc4 C MG MG . A MG 564 1_555 F O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc5 C MG MG . A MG 564 1_555 F O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc6 C MG MG . A MG 564 1_555 F O HOH . A HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 178 n n 
C1 C2 GOL sing 179 n n 
C1 H11 GOL sing 180 n n 
C1 H12 GOL sing 181 n n 
O1 HO1 GOL sing 182 n n 
C2 O2 GOL sing 183 n n 
C2 C3 GOL sing 184 n n 
C2 H2 GOL sing 185 n n 
O2 HO2 GOL sing 186 n n 
C3 O3 GOL sing 187 n n 
C3 H31 GOL sing 188 n n 
C3 H32 GOL sing 189 n n 
O3 HO3 GOL sing 190 n n 
#
_atom_sites.entry_id                     3T8O 
_atom_sites.fract_transf_matrix[1][1]    0.018005 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006675 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005239 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 562 562 ATP ATP . 
C 3 MG A 1 564 564 MG MG . 
D 4 CL A 1 565 565 CL CL . 
E 5 GOL A 1 544 1 GOL GOL . 
F 6 HOH A 1 545 4 HOH HOH . 
F 6 HOH A 2 546 7 HOH HOH . 
F 6 HOH A 3 547 8 HOH HOH . 
F 6 HOH A 4 548 12 HOH HOH . 
F 6 HOH A 5 549 13 HOH HOH . 
F 6 HOH A 6 550 14 HOH HOH . 
F 6 HOH A 7 551 15 HOH HOH . 
F 6 HOH A 8 552 16 HOH HOH . 
F 6 HOH A 9 553 17 HOH HOH . 
F 6 HOH A 10 554 19 HOH HOH . 
F 6 HOH A 11 555 22 HOH HOH . 
F 6 HOH A 12 556 27 HOH HOH . 
F 6 HOH A 13 557 28 HOH HOH . 
F 6 HOH A 14 558 29 HOH HOH . 
F 6 HOH A 15 559 30 HOH HOH . 
F 6 HOH A 16 560 31 HOH HOH . 
F 6 HOH A 17 561 33 HOH HOH . 
F 6 HOH A 18 563 34 HOH HOH . 
F 6 HOH A 19 566 37 HOH HOH . 
F 6 HOH A 20 567 38 HOH HOH . 
F 6 HOH A 21 568 39 HOH HOH . 
F 6 HOH A 22 569 41 HOH HOH . 
F 6 HOH A 23 570 42 HOH HOH . 
F 6 HOH A 24 571 44 HOH HOH . 
F 6 HOH A 25 572 45 HOH HOH . 
F 6 HOH A 26 573 46 HOH HOH . 
F 6 HOH A 27 574 47 HOH HOH . 
F 6 HOH A 28 575 50 HOH HOH . 
F 6 HOH A 29 576 51 HOH HOH . 
F 6 HOH A 30 577 52 HOH HOH . 
F 6 HOH A 31 578 53 HOH HOH . 
F 6 HOH A 32 579 54 HOH HOH . 
F 6 HOH A 33 580 55 HOH HOH . 
F 6 HOH A 34 581 56 HOH HOH . 
F 6 HOH A 35 582 57 HOH HOH . 
F 6 HOH A 36 583 58 HOH HOH . 
F 6 HOH A 37 584 59 HOH HOH . 
F 6 HOH A 38 585 60 HOH HOH . 
F 6 HOH A 39 586 61 HOH HOH . 
F 6 HOH A 40 587 62 HOH HOH . 
F 6 HOH A 41 588 63 HOH HOH . 
F 6 HOH A 42 589 64 HOH HOH . 
F 6 HOH A 43 590 65 HOH HOH . 
F 6 HOH A 44 591 66 HOH HOH . 
F 6 HOH A 45 592 67 HOH HOH . 
F 6 HOH A 46 593 68 HOH HOH . 
F 6 HOH A 47 594 69 HOH HOH . 
F 6 HOH A 48 595 70 HOH HOH . 
F 6 HOH A 49 596 71 HOH HOH . 
F 6 HOH A 50 597 72 HOH HOH . 
F 6 HOH A 51 598 73 HOH HOH . 
F 6 HOH A 52 599 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 2.364 5.016 41.463 1 42 ? C1 GOL 544 A 1 
HETATM 2 O O1 GOL . . . E 5 2.561 4.341 42.694 1 43.47 ? O1 GOL 544 A 1 
HETATM 3 C C2 GOL . . . E 5 0.893 5.327 41.224 1 40.72 ? C2 GOL 544 A 1 
HETATM 4 O O2 GOL . . . E 5 0.431 6.165 42.253 1 40.38 ? O2 GOL 544 A 1 
HETATM 5 C C3 GOL . . . E 5 0.841 5.973 39.849 1 39.25 ? C3 GOL 544 A 1 
HETATM 6 O O3 GOL . . . E 5 -0.382 6.537 39.465 1 36.67 ? O3 GOL 544 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#