data_3T8O
#
_model_server_result.job_id            XY8GT8yC_e1cHl7Z9EB4Mg 
_model_server_result.datetime_utc      '2024-12-02 05:01:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3t8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":562}' 
#
_entry.id    3T8O 
#
_exptl.entry_id    3T8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3T8O 
_cell.length_a            55.541 
_cell.length_b            149.808 
_cell.length_c            190.879 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3T8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 332 A ASP 332 1_555 C MG MG . A MG 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc2 B O2B ATP . A ATP 562 1_555 C MG MG . A MG 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc3 B O1G ATP . A ATP 562 1_555 C MG MG . A MG 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc4 C MG MG . A MG 564 1_555 F O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc5 C MG MG . A MG 564 1_555 F O HOH . A HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc6 C MG MG . A MG 564 1_555 F O HOH . A HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     3T8O 
_atom_sites.fract_transf_matrix[1][1]    0.018005 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006675 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005239 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 562 562 ATP ATP . 
C 3 MG A 1 564 564 MG MG . 
D 4 CL A 1 565 565 CL CL . 
E 5 GOL A 1 544 1 GOL GOL . 
F 6 HOH A 1 545 4 HOH HOH . 
F 6 HOH A 2 546 7 HOH HOH . 
F 6 HOH A 3 547 8 HOH HOH . 
F 6 HOH A 4 548 12 HOH HOH . 
F 6 HOH A 5 549 13 HOH HOH . 
F 6 HOH A 6 550 14 HOH HOH . 
F 6 HOH A 7 551 15 HOH HOH . 
F 6 HOH A 8 552 16 HOH HOH . 
F 6 HOH A 9 553 17 HOH HOH . 
F 6 HOH A 10 554 19 HOH HOH . 
F 6 HOH A 11 555 22 HOH HOH . 
F 6 HOH A 12 556 27 HOH HOH . 
F 6 HOH A 13 557 28 HOH HOH . 
F 6 HOH A 14 558 29 HOH HOH . 
F 6 HOH A 15 559 30 HOH HOH . 
F 6 HOH A 16 560 31 HOH HOH . 
F 6 HOH A 17 561 33 HOH HOH . 
F 6 HOH A 18 563 34 HOH HOH . 
F 6 HOH A 19 566 37 HOH HOH . 
F 6 HOH A 20 567 38 HOH HOH . 
F 6 HOH A 21 568 39 HOH HOH . 
F 6 HOH A 22 569 41 HOH HOH . 
F 6 HOH A 23 570 42 HOH HOH . 
F 6 HOH A 24 571 44 HOH HOH . 
F 6 HOH A 25 572 45 HOH HOH . 
F 6 HOH A 26 573 46 HOH HOH . 
F 6 HOH A 27 574 47 HOH HOH . 
F 6 HOH A 28 575 50 HOH HOH . 
F 6 HOH A 29 576 51 HOH HOH . 
F 6 HOH A 30 577 52 HOH HOH . 
F 6 HOH A 31 578 53 HOH HOH . 
F 6 HOH A 32 579 54 HOH HOH . 
F 6 HOH A 33 580 55 HOH HOH . 
F 6 HOH A 34 581 56 HOH HOH . 
F 6 HOH A 35 582 57 HOH HOH . 
F 6 HOH A 36 583 58 HOH HOH . 
F 6 HOH A 37 584 59 HOH HOH . 
F 6 HOH A 38 585 60 HOH HOH . 
F 6 HOH A 39 586 61 HOH HOH . 
F 6 HOH A 40 587 62 HOH HOH . 
F 6 HOH A 41 588 63 HOH HOH . 
F 6 HOH A 42 589 64 HOH HOH . 
F 6 HOH A 43 590 65 HOH HOH . 
F 6 HOH A 44 591 66 HOH HOH . 
F 6 HOH A 45 592 67 HOH HOH . 
F 6 HOH A 46 593 68 HOH HOH . 
F 6 HOH A 47 594 69 HOH HOH . 
F 6 HOH A 48 595 70 HOH HOH . 
F 6 HOH A 49 596 71 HOH HOH . 
F 6 HOH A 50 597 72 HOH HOH . 
F 6 HOH A 51 598 73 HOH HOH . 
F 6 HOH A 52 599 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 -8.782 29.246 44.083 1 39.2 ? PG ATP 562 A 1 
HETATM 2 O O1G ATP . . . B 2 -7.444 28.544 44.072 1 39.8 ? O1G ATP 562 A 1 
HETATM 3 O O2G ATP . . . B 2 -9.95 28.354 43.698 1 36.46 ? O2G ATP 562 A 1 
HETATM 4 O O3G ATP . . . B 2 -9.045 30.139 45.236 1 39.93 ? O3G ATP 562 A 1 
HETATM 5 P PB ATP . . . B 2 -7.647 31.292 42.384 1 34.56 ? PB ATP 562 A 1 
HETATM 6 O O1B ATP . . . B 2 -7.899 32.549 43.202 1 35.38 ? O1B ATP 562 A 1 
HETATM 7 O O2B ATP . . . B 2 -6.272 30.704 42.325 1 35.78 ? O2B ATP 562 A 1 
HETATM 8 O O3B ATP . . . B 2 -8.724 30.187 42.752 1 37.37 ? O3B ATP 562 A 1 
HETATM 9 P PA ATP . . . B 2 -7.907 31.106 39.46 1 36.73 ? PA ATP 562 A 1 
HETATM 10 O O1A ATP . . . B 2 -6.509 31.24 38.94 1 41.22 ? O1A ATP 562 A 1 
HETATM 11 O O2A ATP . . . B 2 -8.46 29.743 39.467 1 38.08 ? O2A ATP 562 A 1 
HETATM 12 O O3A ATP . . . B 2 -8.075 31.76 40.913 1 38.87 ? O3A ATP 562 A 1 
HETATM 13 O O5' ATP . . . B 2 -8.756 32.174 38.608 1 39.66 ? O5' ATP 562 A 1 
HETATM 14 C C5' ATP . . . B 2 -10.045 32.722 38.967 1 39.58 ? C5' ATP 562 A 1 
HETATM 15 C C4' ATP . . . B 2 -10.965 32.825 37.747 1 39.31 ? C4' ATP 562 A 1 
HETATM 16 O O4' ATP . . . B 2 -10.428 33.719 36.762 1 40.4 ? O4' ATP 562 A 1 
HETATM 17 C C3' ATP . . . B 2 -11.052 31.513 36.986 1 39.02 ? C3' ATP 562 A 1 
HETATM 18 O O3' ATP . . . B 2 -12.093 30.66 37.373 1 40.03 ? O3' ATP 562 A 1 
HETATM 19 C C2' ATP . . . B 2 -11.303 31.89 35.557 1 39.95 ? C2' ATP 562 A 1 
HETATM 20 O O2' ATP . . . B 2 -12.686 32.115 35.318 1 43.93 ? O2' ATP 562 A 1 
HETATM 21 C C1' ATP . . . B 2 -10.538 33.179 35.422 1 39.35 ? C1' ATP 562 A 1 
HETATM 22 N N9 ATP . . . B 2 -9.251 32.799 34.795 1 37.82 ? N9 ATP 562 A 1 
HETATM 23 C C8 ATP . . . B 2 -8.162 32.324 35.439 1 37.72 ? C8 ATP 562 A 1 
HETATM 24 N N7 ATP . . . B 2 -7.139 32.081 34.56 1 37.04 ? N7 ATP 562 A 1 
HETATM 25 C C5 ATP . . . B 2 -7.564 32.387 33.331 1 36.53 ? C5 ATP 562 A 1 
HETATM 26 C C6 ATP . . . B 2 -6.995 32.346 31.972 1 36.51 ? C6 ATP 562 A 1 
HETATM 27 N N6 ATP . . . B 2 -5.74 31.924 31.755 1 36.91 ? N6 ATP 562 A 1 
HETATM 28 N N1 ATP . . . B 2 -7.751 32.723 30.941 1 39.02 ? N1 ATP 562 A 1 
HETATM 29 C C2 ATP . . . B 2 -9.019 33.132 31.133 1 40.71 ? C2 ATP 562 A 1 
HETATM 30 N N3 ATP . . . B 2 -9.595 33.195 32.352 1 40.2 ? N3 ATP 562 A 1 
HETATM 31 C C4 ATP . . . B 2 -8.949 32.845 33.485 1 38.52 ? C4 ATP 562 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           404 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#