data_3T91 # _model_server_result.job_id f-cWDp1LUqbveJQk_Sq61Q _model_server_result.datetime_utc '2024-11-29 17:43:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 3T91 # _exptl.entry_id 3T91 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3T91 _cell.length_a 87.618 _cell.length_b 87.618 _cell.length_c 321.597 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1 A,C,G 3 1 B,D,E,F,H 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -43.809 -75.879414 -53.5995 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MN MN . A MN 1 1_555 G O HOH . A HOH 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc2 C MN MN . A MN 1 1_555 A OD2 ASP 161 A ASP 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc3 C MN MN . A MN 1 1_555 A OD1 ASP 161 A ASP 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 C MN MN . A MN 1 1_555 B OD2 ASP 43 B ASP 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc5 G O HOH . A HOH 99 1_555 D MN MN . B MN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc6 D MN MN . B MN 3 1_555 H O HOH . B HOH 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc7 D MN MN . B MN 3 1_555 B OD2 ASP 161 B ASP 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? metalc ? metalc8 D MN MN . B MN 3 1_555 B OD1 ASP 210 B ASP 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 242 n n C1 O1 MAN sing 243 n n C1 O5 MAN sing 244 n n C1 H1 MAN sing 245 n n C2 C3 MAN sing 246 n n C2 O2 MAN sing 247 n n C2 H2 MAN sing 248 n n C3 C4 MAN sing 249 n n C3 O3 MAN sing 250 n n C3 H3 MAN sing 251 n n C4 C5 MAN sing 252 n n C4 O4 MAN sing 253 n n C4 H4 MAN sing 254 n n C5 C6 MAN sing 255 n n C5 O5 MAN sing 256 n n C5 H5 MAN sing 257 n n C6 O6 MAN sing 258 n n C6 H61 MAN sing 259 n n C6 H62 MAN sing 260 n n O1 HO1 MAN sing 261 n n O2 HO2 MAN sing 262 n n O3 HO3 MAN sing 263 n n O4 HO4 MAN sing 264 n n O6 HO6 MAN sing 265 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3T91 _atom_sites.fract_transf_matrix[1][1] 0.011413 _atom_sites.fract_transf_matrix[1][2] 0.006589 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 1 1 MN MN . D 2 MN B 1 3 3 MN MN . E 3 GL0 B 1 900 5 GL0 GL0 . F 4 MAN B 1 901 5 MAN GL0 . G 5 HOH A 1 4 4 HOH HOH . G 5 HOH A 2 5 5 HOH HOH . G 5 HOH A 3 6 6 HOH HOH . G 5 HOH A 4 7 7 HOH HOH . G 5 HOH A 5 8 8 HOH HOH . G 5 HOH A 6 10 10 HOH HOH . G 5 HOH A 7 12 12 HOH HOH . G 5 HOH A 8 13 13 HOH HOH . G 5 HOH A 9 15 15 HOH HOH . G 5 HOH A 10 18 18 HOH HOH . G 5 HOH A 11 20 20 HOH HOH . G 5 HOH A 12 21 21 HOH HOH . G 5 HOH A 13 22 22 HOH HOH . G 5 HOH A 14 24 24 HOH HOH . G 5 HOH A 15 26 26 HOH HOH . G 5 HOH A 16 27 27 HOH HOH . G 5 HOH A 17 28 28 HOH HOH . G 5 HOH A 18 31 31 HOH HOH . G 5 HOH A 19 32 32 HOH HOH . G 5 HOH A 20 33 33 HOH HOH . G 5 HOH A 21 34 34 HOH HOH . G 5 HOH A 22 35 35 HOH HOH . G 5 HOH A 23 36 36 HOH HOH . G 5 HOH A 24 38 38 HOH HOH . G 5 HOH A 25 39 39 HOH HOH . G 5 HOH A 26 40 40 HOH HOH . G 5 HOH A 27 42 42 HOH HOH . G 5 HOH A 28 45 45 HOH HOH . G 5 HOH A 29 46 46 HOH HOH . G 5 HOH A 30 47 47 HOH HOH . G 5 HOH A 31 48 48 HOH HOH . G 5 HOH A 32 49 49 HOH HOH . G 5 HOH A 33 53 53 HOH HOH . G 5 HOH A 34 55 55 HOH HOH . G 5 HOH A 35 56 56 HOH HOH . G 5 HOH A 36 57 57 HOH HOH . G 5 HOH A 37 58 58 HOH HOH . G 5 HOH A 38 59 59 HOH HOH . G 5 HOH A 39 61 61 HOH HOH . G 5 HOH A 40 62 62 HOH HOH . G 5 HOH A 41 64 64 HOH HOH . G 5 HOH A 42 66 66 HOH HOH . G 5 HOH A 43 67 67 HOH HOH . G 5 HOH A 44 74 74 HOH HOH . G 5 HOH A 45 75 75 HOH HOH . G 5 HOH A 46 77 77 HOH HOH . G 5 HOH A 47 80 80 HOH HOH . G 5 HOH A 48 81 81 HOH HOH . G 5 HOH A 49 83 83 HOH HOH . G 5 HOH A 50 84 84 HOH HOH . G 5 HOH A 51 85 85 HOH HOH . G 5 HOH A 52 86 86 HOH HOH . G 5 HOH A 53 87 87 HOH HOH . G 5 HOH A 54 89 89 HOH HOH . G 5 HOH A 55 91 91 HOH HOH . G 5 HOH A 56 92 92 HOH HOH . G 5 HOH A 57 93 93 HOH HOH . G 5 HOH A 58 94 94 HOH HOH . G 5 HOH A 59 96 96 HOH HOH . G 5 HOH A 60 97 97 HOH HOH . G 5 HOH A 61 98 98 HOH HOH . G 5 HOH A 62 99 99 HOH HOH . G 5 HOH A 63 100 100 HOH HOH . G 5 HOH A 64 101 101 HOH HOH . G 5 HOH A 65 102 102 HOH HOH . G 5 HOH A 66 103 103 HOH HOH . G 5 HOH A 67 104 104 HOH HOH . G 5 HOH A 68 106 106 HOH HOH . G 5 HOH A 69 107 107 HOH HOH . G 5 HOH A 70 112 112 HOH HOH . G 5 HOH A 71 113 113 HOH HOH . G 5 HOH A 72 114 114 HOH HOH . G 5 HOH A 73 115 115 HOH HOH . G 5 HOH A 74 116 116 HOH HOH . G 5 HOH A 75 117 117 HOH HOH . G 5 HOH A 76 120 120 HOH HOH . G 5 HOH A 77 121 121 HOH HOH . G 5 HOH A 78 122 122 HOH HOH . G 5 HOH A 79 125 125 HOH HOH . G 5 HOH A 80 131 131 HOH HOH . G 5 HOH A 81 132 132 HOH HOH . G 5 HOH A 82 135 135 HOH HOH . G 5 HOH A 83 139 139 HOH HOH . G 5 HOH A 84 143 143 HOH HOH . G 5 HOH A 85 144 144 HOH HOH . G 5 HOH A 86 147 147 HOH HOH . G 5 HOH A 87 155 155 HOH HOH . G 5 HOH A 88 156 156 HOH HOH . G 5 HOH A 89 159 159 HOH HOH . G 5 HOH A 90 160 160 HOH HOH . G 5 HOH A 91 828 1 HOH HOH . H 5 HOH B 1 2 2 HOH HOH . H 5 HOH B 2 9 9 HOH HOH . H 5 HOH B 3 11 11 HOH HOH . H 5 HOH B 4 14 14 HOH HOH . H 5 HOH B 5 16 16 HOH HOH . H 5 HOH B 6 17 17 HOH HOH . H 5 HOH B 7 19 19 HOH HOH . H 5 HOH B 8 23 23 HOH HOH . H 5 HOH B 9 25 25 HOH HOH . H 5 HOH B 10 29 29 HOH HOH . H 5 HOH B 11 30 30 HOH HOH . H 5 HOH B 12 37 37 HOH HOH . H 5 HOH B 13 41 41 HOH HOH . H 5 HOH B 14 43 43 HOH HOH . H 5 HOH B 15 44 44 HOH HOH . H 5 HOH B 16 50 50 HOH HOH . H 5 HOH B 17 51 51 HOH HOH . H 5 HOH B 18 52 52 HOH HOH . H 5 HOH B 19 54 54 HOH HOH . H 5 HOH B 20 60 60 HOH HOH . H 5 HOH B 21 63 63 HOH HOH . H 5 HOH B 22 65 65 HOH HOH . H 5 HOH B 23 68 68 HOH HOH . H 5 HOH B 24 69 69 HOH HOH . H 5 HOH B 25 70 70 HOH HOH . H 5 HOH B 26 71 71 HOH HOH . H 5 HOH B 27 72 72 HOH HOH . H 5 HOH B 28 73 73 HOH HOH . H 5 HOH B 29 76 76 HOH HOH . H 5 HOH B 30 78 78 HOH HOH . H 5 HOH B 31 79 79 HOH HOH . H 5 HOH B 32 82 82 HOH HOH . H 5 HOH B 33 88 88 HOH HOH . H 5 HOH B 34 90 90 HOH HOH . H 5 HOH B 35 95 95 HOH HOH . H 5 HOH B 36 105 105 HOH HOH . H 5 HOH B 37 108 108 HOH HOH . H 5 HOH B 38 110 110 HOH HOH . H 5 HOH B 39 111 111 HOH HOH . H 5 HOH B 40 118 118 HOH HOH . H 5 HOH B 41 119 119 HOH HOH . H 5 HOH B 42 123 123 HOH HOH . H 5 HOH B 43 124 124 HOH HOH . H 5 HOH B 44 126 126 HOH HOH . H 5 HOH B 45 127 127 HOH HOH . H 5 HOH B 46 128 128 HOH HOH . H 5 HOH B 47 129 129 HOH HOH . H 5 HOH B 48 130 130 HOH HOH . H 5 HOH B 49 133 133 HOH HOH . H 5 HOH B 50 134 134 HOH HOH . H 5 HOH B 51 136 136 HOH HOH . H 5 HOH B 52 137 137 HOH HOH . H 5 HOH B 53 138 138 HOH HOH . H 5 HOH B 54 140 140 HOH HOH . H 5 HOH B 55 141 141 HOH HOH . H 5 HOH B 56 142 142 HOH HOH . H 5 HOH B 57 145 145 HOH HOH . H 5 HOH B 58 146 146 HOH HOH . H 5 HOH B 59 148 148 HOH HOH . H 5 HOH B 60 149 149 HOH HOH . H 5 HOH B 61 150 150 HOH HOH . H 5 HOH B 62 151 151 HOH HOH . H 5 HOH B 63 152 152 HOH HOH . H 5 HOH B 64 153 153 HOH HOH . H 5 HOH B 65 154 154 HOH HOH . H 5 HOH B 66 157 157 HOH HOH . H 5 HOH B 67 158 158 HOH HOH . H 5 HOH B 68 161 161 HOH HOH . H 5 HOH B 69 828 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . B . F 4 -9.434 -26.379 -12.859 0.5 51.79 ? C1 MAN 901 B 1 HETATM 2 C C2 MAN . B . F 4 -8.11 -27.004 -13.221 0.5 48.08 ? C2 MAN 901 B 1 HETATM 3 C C3 MAN . B . F 4 -7.063 -25.925 -13.265 0.5 49.02 ? C3 MAN 901 B 1 HETATM 4 C C4 MAN . B . F 4 -7.549 -24.768 -12.405 0.5 51.76 ? C4 MAN 901 B 1 HETATM 5 C C5 MAN . B . F 4 -8.24 -25.305 -11.15 0.5 54.19 ? C5 MAN 901 B 1 HETATM 6 C C6 MAN . B . F 4 -8.52 -24.197 -10.137 0.5 60.97 ? C6 MAN 901 B 1 HETATM 7 O O1 MAN . B . F 4 -10.377 -27.377 -13.111 0.5 53.64 ? O1 MAN 901 B 1 HETATM 8 O O2 MAN . B . F 4 -8.272 -27.527 -14.505 0.5 47.68 ? O2 MAN 901 B 1 HETATM 9 O O3 MAN . B . F 4 -6.953 -25.542 -14.613 0.5 44.87 ? O3 MAN 901 B 1 HETATM 10 O O4 MAN . B . F 4 -6.451 -23.952 -12.076 0.5 59.88 ? O4 MAN 901 B 1 HETATM 11 O O5 MAN . B . F 4 -9.437 -25.978 -11.503 0.5 59.53 ? O5 MAN 901 B 1 HETATM 12 O O6 MAN . B . F 4 -9.899 -23.894 -10.013 0.5 63.24 ? O6 MAN 901 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #