data_3T92 # _model_server_result.job_id LlXdi7ckoK7Hw9zfk0xVnw _model_server_result.datetime_utc '2024-10-10 05:13:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3t92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":125}' # _entry.id 3T92 # _exptl.entry_id 3T92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.186 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,3',3''-phosphanetriyltripropanoic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3T92 _cell.length_a 47.86 _cell.length_b 47.86 _cell.length_c 104.13 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3T92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 22 A HIS 22 1_555 B ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A SG CYS 26 A CYS 26 1_555 B ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 A SG CYS 31 A CYS 31 1_555 B ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc4 A SG CYS 36 A CYS 36 1_555 B ZN ZN . A ZN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc5 A SG CYS 49 A CYS 49 1_555 C ZN ZN . A ZN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc6 A SG CYS 57 A CYS 57 1_555 C ZN ZN . A ZN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc7 A SG CYS 60 A CYS 60 1_555 C ZN ZN . A ZN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 A NE2 HIS 70 A HIS 70 1_555 D ZN ZN . A ZN 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc9 A SG CYS 74 A CYS 74 1_555 D ZN ZN . A ZN 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc10 A SG CYS 79 A CYS 79 1_555 D ZN ZN . A ZN 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc11 A SG CYS 84 A CYS 84 1_555 D ZN ZN . A ZN 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? # _chem_comp.formula 'C9 H15 O6 P' _chem_comp.formula_weight 250.186 _chem_comp.id TCE _chem_comp.mon_nstd_flag . _chem_comp.name "3,3',3''-phosphanetriyltripropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-[bis(2-carboxyethyl)phosphanyl]propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C14 TCE doub 326 n n C14 O15 TCE sing 327 n n C14 C5 TCE sing 328 n n O15 HO15 TCE sing 329 n n C2 C5 TCE sing 330 n n C5 H5 TCE sing 331 n n C5 H5A TCE sing 332 n n C2 P TCE sing 333 n n C2 H2 TCE sing 334 n n C2 H2A TCE sing 335 n n C1 P TCE sing 336 n n P C3 TCE sing 337 n n C3 C6 TCE sing 338 n n C3 H3 TCE sing 339 n n C3 H3A TCE sing 340 n n C6 C8 TCE sing 341 n n C6 H6 TCE sing 342 n n C6 H6A TCE sing 343 n n O10 C8 TCE doub 344 n n C8 O9 TCE sing 345 n n O9 HO9 TCE sing 346 n n C4 C1 TCE sing 347 n n C1 H1 TCE sing 348 n n C1 H1A TCE sing 349 n n C11 C4 TCE sing 350 n n C4 H4 TCE sing 351 n n C4 H4A TCE sing 352 n n O13 C11 TCE doub 353 n n O12 C11 TCE sing 354 n n O12 HO12 TCE sing 355 n n # _atom_sites.entry_id 3T92 _atom_sites.fract_transf_matrix[1][1] 0.020894 _atom_sites.fract_transf_matrix[1][2] 0.012063 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 122 1 ZN ZN . C 2 ZN A 1 123 2 ZN ZN . D 2 ZN A 1 124 3 ZN ZN . E 3 TCE A 1 125 2 TCE TCE . F 4 TAM A 1 126 2 TAM TAM . G 5 ACN A 1 127 3 ACN ACN . H 6 HOH A 1 128 128 HOH HOH . H 6 HOH A 2 129 129 HOH HOH . H 6 HOH A 3 130 130 HOH HOH . H 6 HOH A 4 131 131 HOH HOH . H 6 HOH A 5 132 2 HOH HOH . H 6 HOH A 6 133 133 HOH HOH . H 6 HOH A 7 134 134 HOH HOH . H 6 HOH A 8 135 4 HOH HOH . H 6 HOH A 9 136 136 HOH HOH . H 6 HOH A 10 137 137 HOH HOH . H 6 HOH A 11 138 5 HOH HOH . H 6 HOH A 12 139 139 HOH HOH . H 6 HOH A 13 140 140 HOH HOH . H 6 HOH A 14 141 6 HOH HOH . H 6 HOH A 15 142 142 HOH HOH . H 6 HOH A 16 143 143 HOH HOH . H 6 HOH A 17 144 144 HOH HOH . H 6 HOH A 18 145 145 HOH HOH . H 6 HOH A 19 146 146 HOH HOH . H 6 HOH A 20 147 147 HOH HOH . H 6 HOH A 21 148 148 HOH HOH . H 6 HOH A 22 149 8 HOH HOH . H 6 HOH A 23 150 9 HOH HOH . H 6 HOH A 24 151 151 HOH HOH . H 6 HOH A 25 152 152 HOH HOH . H 6 HOH A 26 153 153 HOH HOH . H 6 HOH A 27 154 10 HOH HOH . H 6 HOH A 28 155 155 HOH HOH . H 6 HOH A 29 156 11 HOH HOH . H 6 HOH A 30 157 13 HOH HOH . H 6 HOH A 31 158 158 HOH HOH . H 6 HOH A 32 159 14 HOH HOH . H 6 HOH A 33 160 15 HOH HOH . H 6 HOH A 34 161 16 HOH HOH . H 6 HOH A 35 162 17 HOH HOH . H 6 HOH A 36 163 163 HOH HOH . H 6 HOH A 37 164 19 HOH HOH . H 6 HOH A 38 165 21 HOH HOH . H 6 HOH A 39 166 166 HOH HOH . H 6 HOH A 40 167 24 HOH HOH . H 6 HOH A 41 168 168 HOH HOH . H 6 HOH A 42 169 169 HOH HOH . H 6 HOH A 43 170 170 HOH HOH . H 6 HOH A 44 171 25 HOH HOH . H 6 HOH A 45 172 172 HOH HOH . H 6 HOH A 46 173 173 HOH HOH . H 6 HOH A 47 174 26 HOH HOH . H 6 HOH A 48 175 175 HOH HOH . H 6 HOH A 49 176 27 HOH HOH . H 6 HOH A 50 177 177 HOH HOH . H 6 HOH A 51 178 178 HOH HOH . H 6 HOH A 52 179 179 HOH HOH . H 6 HOH A 53 180 180 HOH HOH . H 6 HOH A 54 181 28 HOH HOH . H 6 HOH A 55 182 182 HOH HOH . H 6 HOH A 56 183 31 HOH HOH . H 6 HOH A 57 184 32 HOH HOH . H 6 HOH A 58 185 185 HOH HOH . H 6 HOH A 59 186 186 HOH HOH . H 6 HOH A 60 187 187 HOH HOH . H 6 HOH A 61 188 188 HOH HOH . H 6 HOH A 62 189 34 HOH HOH . H 6 HOH A 63 190 190 HOH HOH . H 6 HOH A 64 191 191 HOH HOH . H 6 HOH A 65 192 192 HOH HOH . H 6 HOH A 66 193 35 HOH HOH . H 6 HOH A 67 194 194 HOH HOH . H 6 HOH A 68 195 195 HOH HOH . H 6 HOH A 69 196 196 HOH HOH . H 6 HOH A 70 197 197 HOH HOH . H 6 HOH A 71 198 198 HOH HOH . H 6 HOH A 72 199 199 HOH HOH . H 6 HOH A 73 200 200 HOH HOH . H 6 HOH A 74 201 201 HOH HOH . H 6 HOH A 75 202 202 HOH HOH . H 6 HOH A 76 203 203 HOH HOH . H 6 HOH A 77 204 204 HOH HOH . H 6 HOH A 78 205 37 HOH HOH . H 6 HOH A 79 206 39 HOH HOH . H 6 HOH A 80 207 40 HOH HOH . H 6 HOH A 81 208 208 HOH HOH . H 6 HOH A 82 209 41 HOH HOH . H 6 HOH A 83 210 210 HOH HOH . H 6 HOH A 84 211 43 HOH HOH . H 6 HOH A 85 212 212 HOH HOH . H 6 HOH A 86 213 46 HOH HOH . H 6 HOH A 87 214 47 HOH HOH . H 6 HOH A 88 215 215 HOH HOH . H 6 HOH A 89 216 216 HOH HOH . H 6 HOH A 90 217 217 HOH HOH . H 6 HOH A 91 218 218 HOH HOH . H 6 HOH A 92 219 219 HOH HOH . H 6 HOH A 93 220 220 HOH HOH . H 6 HOH A 94 221 221 HOH HOH . H 6 HOH A 95 222 222 HOH HOH . H 6 HOH A 96 223 48 HOH HOH . H 6 HOH A 97 224 224 HOH HOH . H 6 HOH A 98 225 225 HOH HOH . H 6 HOH A 99 226 49 HOH HOH . H 6 HOH A 100 227 50 HOH HOH . H 6 HOH A 101 228 228 HOH HOH . H 6 HOH A 102 229 53 HOH HOH . H 6 HOH A 103 230 54 HOH HOH . H 6 HOH A 104 231 231 HOH HOH . H 6 HOH A 105 232 232 HOH HOH . H 6 HOH A 106 233 233 HOH HOH . H 6 HOH A 107 234 234 HOH HOH . H 6 HOH A 108 235 235 HOH HOH . H 6 HOH A 109 236 236 HOH HOH . H 6 HOH A 110 237 237 HOH HOH . H 6 HOH A 111 238 238 HOH HOH . H 6 HOH A 112 239 239 HOH HOH . H 6 HOH A 113 240 240 HOH HOH . H 6 HOH A 114 241 241 HOH HOH . H 6 HOH A 115 242 242 HOH HOH . H 6 HOH A 116 243 243 HOH HOH . H 6 HOH A 117 244 244 HOH HOH . H 6 HOH A 118 245 245 HOH HOH . H 6 HOH A 119 246 246 HOH HOH . H 6 HOH A 120 247 247 HOH HOH . H 6 HOH A 121 248 248 HOH HOH . H 6 HOH A 122 249 249 HOH HOH . H 6 HOH A 123 250 250 HOH HOH . H 6 HOH A 124 251 251 HOH HOH . H 6 HOH A 125 252 252 HOH HOH . H 6 HOH A 126 253 253 HOH HOH . H 6 HOH A 127 254 254 HOH HOH . H 6 HOH A 128 255 255 HOH HOH . H 6 HOH A 129 256 256 HOH HOH . H 6 HOH A 130 257 257 HOH HOH . H 6 HOH A 131 258 56 HOH HOH . H 6 HOH A 132 259 59 HOH HOH . H 6 HOH A 133 260 60 HOH HOH . H 6 HOH A 134 261 63 HOH HOH . H 6 HOH A 135 262 65 HOH HOH . H 6 HOH A 136 263 70 HOH HOH . H 6 HOH A 137 264 78 HOH HOH . H 6 HOH A 138 265 79 HOH HOH . H 6 HOH A 139 266 85 HOH HOH . H 6 HOH A 140 267 93 HOH HOH . H 6 HOH A 141 268 94 HOH HOH . H 6 HOH A 142 269 97 HOH HOH . H 6 HOH A 143 270 98 HOH HOH . H 6 HOH A 144 271 99 HOH HOH . H 6 HOH A 145 272 100 HOH HOH . H 6 HOH A 146 273 101 HOH HOH . H 6 HOH A 147 274 102 HOH HOH . H 6 HOH A 148 275 103 HOH HOH . H 6 HOH A 149 276 104 HOH HOH . H 6 HOH A 150 277 105 HOH HOH . H 6 HOH A 151 278 106 HOH HOH . H 6 HOH A 152 279 108 HOH HOH . H 6 HOH A 153 280 109 HOH HOH . H 6 HOH A 154 281 110 HOH HOH . H 6 HOH A 155 282 111 HOH HOH . H 6 HOH A 156 283 112 HOH HOH . H 6 HOH A 157 284 113 HOH HOH . H 6 HOH A 158 285 114 HOH HOH . H 6 HOH A 159 286 115 HOH HOH . H 6 HOH A 160 287 116 HOH HOH . H 6 HOH A 161 288 118 HOH HOH . H 6 HOH A 162 289 119 HOH HOH . H 6 HOH A 163 290 121 HOH HOH . H 6 HOH A 164 291 122 HOH HOH . H 6 HOH A 165 292 123 HOH HOH . H 6 HOH A 166 293 124 HOH HOH . H 6 HOH A 167 294 125 HOH HOH . H 6 HOH A 168 295 126 HOH HOH . H 6 HOH A 169 296 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 TCE . . . E 3 11.737 9.644 3.5 0.8 61.95 ? O16 TCE 125 A 1 HETATM 2 C C14 TCE . . . E 3 12.977 9.785 3.573 0.8 62.06 ? C14 TCE 125 A 1 HETATM 3 O O15 TCE . . . E 3 13.69 10.071 2.588 0.8 63.1 ? O15 TCE 125 A 1 HETATM 4 C C5 TCE . . . E 3 13.663 9.598 4.902 0.8 62.28 ? C5 TCE 125 A 1 HETATM 5 C C2 TCE . . . E 3 13.156 10.572 5.954 0.8 61.87 ? C2 TCE 125 A 1 HETATM 6 P P TCE . . . E 3 13.965 12.244 5.834 0.8 63.33 ? P TCE 125 A 1 HETATM 7 C C3 TCE . . . E 3 14.116 13.277 7.378 0.8 62.64 ? C3 TCE 125 A 1 HETATM 8 C C6 TCE . . . E 3 15.214 12.677 8.252 0.8 62.47 ? C6 TCE 125 A 1 HETATM 9 C C8 TCE . . . E 3 15.315 13.287 9.633 0.8 62.18 ? C8 TCE 125 A 1 HETATM 10 O O10 TCE . . . E 3 16.034 12.695 10.468 0.8 60.7 ? O10 TCE 125 A 1 HETATM 11 O O9 TCE . . . E 3 14.696 14.345 9.901 0.8 62.91 ? O9 TCE 125 A 1 HETATM 12 C C1 TCE . . . E 3 14.618 12.841 4.192 0.8 63.66 ? C1 TCE 125 A 1 HETATM 13 C C4 TCE . . . E 3 14.259 14.302 3.965 0.8 64.75 ? C4 TCE 125 A 1 HETATM 14 C C11 TCE . . . E 3 15.118 15.192 4.828 0.8 65.04 ? C11 TCE 125 A 1 HETATM 15 O O12 TCE . . . E 3 14.686 16.331 5.116 0.8 65.58 ? O12 TCE 125 A 1 HETATM 16 O O13 TCE . . . E 3 16.22 14.754 5.224 0.8 65.13 ? O13 TCE 125 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #