data_3TA1 # _model_server_result.job_id OAxstosbJax-cZN56-Uivw _model_server_result.datetime_utc '2025-02-05 12:55:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ta1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":119}' # _entry.id 3TA1 # _exptl.entry_id 3TA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 133.59 _cell.angle_gamma 90 _cell.entry_id 3TA1 _cell.length_a 123.31 _cell.length_b 92 _cell.length_c 88.38 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,I,J,M,O,P 1 1 B,E,F,H,K,L,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3TA1 _atom_sites.fract_transf_matrix[1][1] 0.00811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00772 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 119 1 ADP ADP . H 2 ADP B 1 119 3 ADP ADP . I 2 ADP C 1 119 6 ADP ADP . J 2 ADP D 1 119 2 ADP ADP . K 2 ADP E 1 119 5 ADP ADP . L 2 ADP F 1 119 4 ADP ADP . M 3 HOH A 1 120 6 HOH HOH . M 3 HOH A 2 121 7 HOH HOH . M 3 HOH A 3 122 8 HOH HOH . M 3 HOH A 4 123 11 HOH HOH . M 3 HOH A 5 124 12 HOH HOH . M 3 HOH A 6 125 13 HOH HOH . M 3 HOH A 7 126 24 HOH HOH . M 3 HOH A 8 127 25 HOH HOH . M 3 HOH A 9 128 26 HOH HOH . M 3 HOH A 10 129 129 HOH HOH . M 3 HOH A 11 130 130 HOH HOH . M 3 HOH A 12 131 27 HOH HOH . M 3 HOH A 13 132 28 HOH HOH . M 3 HOH A 14 133 29 HOH HOH . M 3 HOH A 15 134 42 HOH HOH . M 3 HOH A 16 135 47 HOH HOH . M 3 HOH A 17 136 48 HOH HOH . M 3 HOH A 18 137 49 HOH HOH . M 3 HOH A 19 138 57 HOH HOH . M 3 HOH A 20 139 77 HOH HOH . M 3 HOH A 21 140 84 HOH HOH . M 3 HOH A 22 141 86 HOH HOH . M 3 HOH A 23 142 88 HOH HOH . M 3 HOH A 24 143 99 HOH HOH . M 3 HOH A 25 144 112 HOH HOH . M 3 HOH A 26 145 115 HOH HOH . M 3 HOH A 27 146 116 HOH HOH . M 3 HOH A 28 147 117 HOH HOH . N 3 HOH B 1 121 18 HOH HOH . N 3 HOH B 2 122 19 HOH HOH . N 3 HOH B 3 123 20 HOH HOH . N 3 HOH B 4 124 30 HOH HOH . N 3 HOH B 5 125 31 HOH HOH . N 3 HOH B 6 126 126 HOH HOH . N 3 HOH B 7 127 32 HOH HOH . N 3 HOH B 8 128 33 HOH HOH . N 3 HOH B 9 129 34 HOH HOH . N 3 HOH B 10 130 50 HOH HOH . N 3 HOH B 11 131 51 HOH HOH . N 3 HOH B 12 132 59 HOH HOH . N 3 HOH B 13 133 64 HOH HOH . N 3 HOH B 14 134 65 HOH HOH . N 3 HOH B 15 135 75 HOH HOH . N 3 HOH B 16 136 78 HOH HOH . N 3 HOH B 17 137 89 HOH HOH . N 3 HOH B 18 138 93 HOH HOH . N 3 HOH B 19 139 108 HOH HOH . N 3 HOH B 20 140 114 HOH HOH . O 3 HOH C 1 120 9 HOH HOH . O 3 HOH C 2 121 10 HOH HOH . O 3 HOH C 3 122 14 HOH HOH . O 3 HOH C 4 123 35 HOH HOH . O 3 HOH C 5 124 36 HOH HOH . O 3 HOH C 6 125 38 HOH HOH . O 3 HOH C 7 126 39 HOH HOH . O 3 HOH C 8 127 40 HOH HOH . O 3 HOH C 9 128 41 HOH HOH . O 3 HOH C 10 129 43 HOH HOH . O 3 HOH C 11 130 53 HOH HOH . O 3 HOH C 12 131 62 HOH HOH . O 3 HOH C 13 132 63 HOH HOH . O 3 HOH C 14 133 67 HOH HOH . O 3 HOH C 15 134 71 HOH HOH . O 3 HOH C 16 135 74 HOH HOH . O 3 HOH C 17 136 80 HOH HOH . O 3 HOH C 18 137 81 HOH HOH . O 3 HOH C 19 138 83 HOH HOH . O 3 HOH C 20 139 92 HOH HOH . O 3 HOH C 21 140 98 HOH HOH . O 3 HOH C 22 141 102 HOH HOH . O 3 HOH C 23 142 118 HOH HOH . P 3 HOH D 1 120 2 HOH HOH . P 3 HOH D 2 121 3 HOH HOH . P 3 HOH D 3 122 4 HOH HOH . P 3 HOH D 4 123 5 HOH HOH . P 3 HOH D 5 124 15 HOH HOH . P 3 HOH D 6 125 37 HOH HOH . P 3 HOH D 7 126 44 HOH HOH . P 3 HOH D 8 127 45 HOH HOH . P 3 HOH D 9 128 46 HOH HOH . P 3 HOH D 10 129 68 HOH HOH . P 3 HOH D 11 130 69 HOH HOH . P 3 HOH D 12 131 73 HOH HOH . P 3 HOH D 13 132 79 HOH HOH . P 3 HOH D 14 133 85 HOH HOH . P 3 HOH D 15 134 87 HOH HOH . P 3 HOH D 16 135 90 HOH HOH . P 3 HOH D 17 136 91 HOH HOH . P 3 HOH D 18 137 96 HOH HOH . P 3 HOH D 19 138 100 HOH HOH . P 3 HOH D 20 139 103 HOH HOH . P 3 HOH D 21 140 104 HOH HOH . P 3 HOH D 22 141 109 HOH HOH . P 3 HOH D 23 142 110 HOH HOH . P 3 HOH D 24 143 119 HOH HOH . Q 3 HOH E 1 120 1 HOH HOH . Q 3 HOH E 2 121 16 HOH HOH . Q 3 HOH E 3 122 23 HOH HOH . Q 3 HOH E 4 123 54 HOH HOH . Q 3 HOH E 5 124 124 HOH HOH . Q 3 HOH E 6 125 55 HOH HOH . Q 3 HOH E 7 126 56 HOH HOH . Q 3 HOH E 8 127 58 HOH HOH . Q 3 HOH E 9 128 60 HOH HOH . Q 3 HOH E 10 129 66 HOH HOH . Q 3 HOH E 11 130 72 HOH HOH . Q 3 HOH E 12 131 76 HOH HOH . Q 3 HOH E 13 132 82 HOH HOH . Q 3 HOH E 14 133 95 HOH HOH . Q 3 HOH E 15 134 97 HOH HOH . Q 3 HOH E 16 135 101 HOH HOH . Q 3 HOH E 17 136 111 HOH HOH . Q 3 HOH E 18 137 113 HOH HOH . Q 3 HOH E 19 138 120 HOH HOH . R 3 HOH F 1 120 17 HOH HOH . R 3 HOH F 2 121 121 HOH HOH . R 3 HOH F 3 122 122 HOH HOH . R 3 HOH F 4 123 123 HOH HOH . R 3 HOH F 5 124 21 HOH HOH . R 3 HOH F 6 125 125 HOH HOH . R 3 HOH F 7 126 22 HOH HOH . R 3 HOH F 8 127 127 HOH HOH . R 3 HOH F 9 128 128 HOH HOH . R 3 HOH F 10 129 52 HOH HOH . R 3 HOH F 11 130 61 HOH HOH . R 3 HOH F 12 131 70 HOH HOH . R 3 HOH F 13 132 94 HOH HOH . R 3 HOH F 14 133 105 HOH HOH . R 3 HOH F 15 134 106 HOH HOH . R 3 HOH F 16 135 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 2 15.666 63.436 -27.874 1 60.23 ? PB ADP 119 B 1 HETATM 2 O O1B ADP . . . H 2 16.763 64.236 -28.505 1 60.72 ? O1B ADP 119 B 1 HETATM 3 O O2B ADP . . . H 2 16.287 62.521 -26.816 1 62.16 ? O2B ADP 119 B 1 HETATM 4 O O3B ADP . . . H 2 14.839 64.392 -27.055 1 61.44 ? O3B ADP 119 B 1 HETATM 5 P PA ADP . . . H 2 13.625 61.711 -28.537 1 56.52 ? PA ADP 119 B 1 HETATM 6 O O1A ADP . . . H 2 12.562 62.606 -27.836 1 57.52 ? O1A ADP 119 B 1 HETATM 7 O O2A ADP . . . H 2 13.182 61.029 -29.821 1 57.65 ? O2A ADP 119 B 1 HETATM 8 O O3A ADP . . . H 2 14.845 62.587 -28.874 1 60.52 ? O3A ADP 119 B 1 HETATM 9 O O5' ADP . . . H 2 14.019 60.581 -27.413 1 56.26 ? O5' ADP 119 B 1 HETATM 10 C C5' ADP . . . H 2 14.925 59.559 -27.838 1 50.06 ? C5' ADP 119 B 1 HETATM 11 C C4' ADP . . . H 2 14.742 58.295 -27.018 1 48.6 ? C4' ADP 119 B 1 HETATM 12 O O4' ADP . . . H 2 14.677 58.647 -25.603 1 48.78 ? O4' ADP 119 B 1 HETATM 13 C C3' ADP . . . H 2 13.38 57.681 -27.348 1 48.78 ? C3' ADP 119 B 1 HETATM 14 O O3' ADP . . . H 2 13.363 56.873 -28.52 1 49.81 ? O3' ADP 119 B 1 HETATM 15 C C2' ADP . . . H 2 13.062 56.914 -26.041 1 48.72 ? C2' ADP 119 B 1 HETATM 16 O O2' ADP . . . H 2 13.652 55.606 -26.047 1 50.61 ? O2' ADP 119 B 1 HETATM 17 C C1' ADP . . . H 2 13.629 57.842 -24.987 1 48.55 ? C1' ADP 119 B 1 HETATM 18 N N9 ADP . . . H 2 12.725 58.81 -24.312 1 48.83 ? N9 ADP 119 B 1 HETATM 19 C C8 ADP . . . H 2 12.447 60.137 -24.683 1 49.05 ? C8 ADP 119 B 1 HETATM 20 N N7 ADP . . . H 2 11.65 60.74 -23.814 1 47.83 ? N7 ADP 119 B 1 HETATM 21 C C5 ADP . . . H 2 11.401 59.781 -22.846 1 47.73 ? C5 ADP 119 B 1 HETATM 22 C C6 ADP . . . H 2 10.607 59.774 -21.633 1 47.92 ? C6 ADP 119 B 1 HETATM 23 N N6 ADP . . . H 2 9.935 60.897 -21.189 1 47.84 ? N6 ADP 119 B 1 HETATM 24 N N1 ADP . . . H 2 10.566 58.632 -20.875 1 47.96 ? N1 ADP 119 B 1 HETATM 25 C C2 ADP . . . H 2 11.22 57.534 -21.326 1 48.75 ? C2 ADP 119 B 1 HETATM 26 N N3 ADP . . . H 2 12.026 57.45 -22.438 1 48.26 ? N3 ADP 119 B 1 HETATM 27 C C4 ADP . . . H 2 12.06 58.58 -23.146 1 47.95 ? C4 ADP 119 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 472 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #