data_3TB6
#
_model_server_result.job_id            Q5hvF-mLUE4vYibxe9lK4A 
_model_server_result.datetime_utc      '2024-11-01 20:33:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tb6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":400}' 
#
_entry.id    3TB6 
#
_exptl.entry_id    3TB6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-L-arabinopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TB6 
_cell.length_a            62.068 
_cell.length_b            106.333 
_cell.length_c            111.847 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                ARB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-L-arabinopyranose 
_chem_comp.type              'l-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-L-arabinose;L-arabinose;arabinose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 ARB sing 13 n n 
C1 O1 ARB sing 14 n n 
C1 O5 ARB sing 15 n n 
C1 H1 ARB sing 16 n n 
C2 C3 ARB sing 17 n n 
C2 O2 ARB sing 18 n n 
C2 H2 ARB sing 19 n n 
C3 C4 ARB sing 20 n n 
C3 O3 ARB sing 21 n n 
C3 H3 ARB sing 22 n n 
C4 C5 ARB sing 23 n n 
C4 O4 ARB sing 24 n n 
C4 H4 ARB sing 25 n n 
C5 O5 ARB sing 26 n n 
C5 H51 ARB sing 27 n n 
C5 H52 ARB sing 28 n n 
O1 HO1 ARB sing 29 n n 
O2 HO2 ARB sing 30 n n 
O3 HO3 ARB sing 31 n n 
O4 HO4 ARB sing 32 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
ARB LArapb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
ARB b-L-arabinopyranose 'COMMON NAME' GMML 1 
ARB b-L-Arap 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
ARB Ara 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3TB6 
_atom_sites.fract_transf_matrix[1][1]    0.016111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009404 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ARB A 1 400 400 ARB ARB . 
D 3 GOL A 1 401 401 GOL GOL . 
E 2 ARB B 1 400 400 ARB ARB . 
F 3 GOL B 1 401 401 GOL GOL . 
G 4 HOH A 1 501 501 HOH HOH . 
G 4 HOH A 2 502 502 HOH HOH . 
G 4 HOH A 3 503 503 HOH HOH . 
G 4 HOH A 4 504 504 HOH HOH . 
G 4 HOH A 5 505 505 HOH HOH . 
G 4 HOH A 6 506 506 HOH HOH . 
G 4 HOH A 7 507 507 HOH HOH . 
G 4 HOH A 8 508 508 HOH HOH . 
G 4 HOH A 9 509 509 HOH HOH . 
G 4 HOH A 10 510 510 HOH HOH . 
G 4 HOH A 11 511 511 HOH HOH . 
G 4 HOH A 12 512 512 HOH HOH . 
G 4 HOH A 13 513 513 HOH HOH . 
G 4 HOH A 14 514 514 HOH HOH . 
G 4 HOH A 15 515 515 HOH HOH . 
G 4 HOH A 16 516 516 HOH HOH . 
G 4 HOH A 17 517 517 HOH HOH . 
G 4 HOH A 18 518 518 HOH HOH . 
G 4 HOH A 19 519 519 HOH HOH . 
G 4 HOH A 20 520 520 HOH HOH . 
G 4 HOH A 21 521 521 HOH HOH . 
G 4 HOH A 22 522 522 HOH HOH . 
G 4 HOH A 23 523 523 HOH HOH . 
G 4 HOH A 24 524 524 HOH HOH . 
G 4 HOH A 25 525 525 HOH HOH . 
G 4 HOH A 26 526 526 HOH HOH . 
G 4 HOH A 27 527 527 HOH HOH . 
G 4 HOH A 28 528 528 HOH HOH . 
G 4 HOH A 29 529 529 HOH HOH . 
G 4 HOH A 30 530 530 HOH HOH . 
G 4 HOH A 31 531 531 HOH HOH . 
G 4 HOH A 32 532 532 HOH HOH . 
G 4 HOH A 33 533 533 HOH HOH . 
G 4 HOH A 34 534 534 HOH HOH . 
G 4 HOH A 35 535 535 HOH HOH . 
G 4 HOH A 36 536 536 HOH HOH . 
G 4 HOH A 37 537 537 HOH HOH . 
G 4 HOH A 38 538 538 HOH HOH . 
G 4 HOH A 39 539 539 HOH HOH . 
G 4 HOH A 40 540 540 HOH HOH . 
G 4 HOH A 41 541 541 HOH HOH . 
G 4 HOH A 42 542 542 HOH HOH . 
G 4 HOH A 43 543 543 HOH HOH . 
G 4 HOH A 44 544 544 HOH HOH . 
G 4 HOH A 45 545 545 HOH HOH . 
G 4 HOH A 46 546 546 HOH HOH . 
G 4 HOH A 47 547 547 HOH HOH . 
G 4 HOH A 48 548 548 HOH HOH . 
G 4 HOH A 49 549 549 HOH HOH . 
G 4 HOH A 50 550 550 HOH HOH . 
G 4 HOH A 51 551 551 HOH HOH . 
G 4 HOH A 52 552 552 HOH HOH . 
G 4 HOH A 53 553 553 HOH HOH . 
G 4 HOH A 54 554 554 HOH HOH . 
G 4 HOH A 55 555 555 HOH HOH . 
G 4 HOH A 56 556 556 HOH HOH . 
G 4 HOH A 57 557 557 HOH HOH . 
G 4 HOH A 58 558 558 HOH HOH . 
G 4 HOH A 59 559 559 HOH HOH . 
G 4 HOH A 60 560 560 HOH HOH . 
G 4 HOH A 61 561 561 HOH HOH . 
G 4 HOH A 62 562 562 HOH HOH . 
G 4 HOH A 63 563 563 HOH HOH . 
G 4 HOH A 64 564 564 HOH HOH . 
G 4 HOH A 65 565 565 HOH HOH . 
G 4 HOH A 66 566 566 HOH HOH . 
G 4 HOH A 67 567 567 HOH HOH . 
G 4 HOH A 68 568 568 HOH HOH . 
G 4 HOH A 69 569 569 HOH HOH . 
G 4 HOH A 70 570 570 HOH HOH . 
G 4 HOH A 71 571 571 HOH HOH . 
G 4 HOH A 72 572 572 HOH HOH . 
G 4 HOH A 73 573 573 HOH HOH . 
G 4 HOH A 74 574 574 HOH HOH . 
G 4 HOH A 75 575 575 HOH HOH . 
G 4 HOH A 76 576 576 HOH HOH . 
G 4 HOH A 77 577 577 HOH HOH . 
G 4 HOH A 78 578 578 HOH HOH . 
G 4 HOH A 79 579 579 HOH HOH . 
G 4 HOH A 80 580 580 HOH HOH . 
G 4 HOH A 81 581 581 HOH HOH . 
G 4 HOH A 82 582 582 HOH HOH . 
G 4 HOH A 83 583 583 HOH HOH . 
G 4 HOH A 84 584 584 HOH HOH . 
G 4 HOH A 85 585 585 HOH HOH . 
G 4 HOH A 86 586 586 HOH HOH . 
G 4 HOH A 87 587 587 HOH HOH . 
G 4 HOH A 88 588 588 HOH HOH . 
G 4 HOH A 89 589 589 HOH HOH . 
G 4 HOH A 90 590 590 HOH HOH . 
G 4 HOH A 91 591 591 HOH HOH . 
G 4 HOH A 92 592 592 HOH HOH . 
G 4 HOH A 93 593 593 HOH HOH . 
G 4 HOH A 94 594 594 HOH HOH . 
G 4 HOH A 95 595 595 HOH HOH . 
G 4 HOH A 96 596 596 HOH HOH . 
G 4 HOH A 97 597 597 HOH HOH . 
G 4 HOH A 98 598 598 HOH HOH . 
G 4 HOH A 99 599 599 HOH HOH . 
G 4 HOH A 100 600 600 HOH HOH . 
G 4 HOH A 101 601 601 HOH HOH . 
G 4 HOH A 102 602 602 HOH HOH . 
G 4 HOH A 103 603 603 HOH HOH . 
G 4 HOH A 104 604 604 HOH HOH . 
G 4 HOH A 105 605 605 HOH HOH . 
G 4 HOH A 106 606 606 HOH HOH . 
G 4 HOH A 107 607 607 HOH HOH . 
G 4 HOH A 108 608 608 HOH HOH . 
G 4 HOH A 109 609 609 HOH HOH . 
G 4 HOH A 110 610 610 HOH HOH . 
G 4 HOH A 111 611 611 HOH HOH . 
G 4 HOH A 112 612 612 HOH HOH . 
G 4 HOH A 113 613 613 HOH HOH . 
G 4 HOH A 114 614 614 HOH HOH . 
G 4 HOH A 115 615 615 HOH HOH . 
G 4 HOH A 116 616 616 HOH HOH . 
G 4 HOH A 117 617 617 HOH HOH . 
G 4 HOH A 118 618 618 HOH HOH . 
G 4 HOH A 119 619 619 HOH HOH . 
G 4 HOH A 120 620 620 HOH HOH . 
G 4 HOH A 121 621 621 HOH HOH . 
G 4 HOH A 122 622 622 HOH HOH . 
G 4 HOH A 123 623 623 HOH HOH . 
G 4 HOH A 124 624 624 HOH HOH . 
G 4 HOH A 125 625 625 HOH HOH . 
G 4 HOH A 126 626 626 HOH HOH . 
G 4 HOH A 127 627 627 HOH HOH . 
G 4 HOH A 128 628 628 HOH HOH . 
G 4 HOH A 129 629 629 HOH HOH . 
G 4 HOH A 130 630 630 HOH HOH . 
G 4 HOH A 131 631 631 HOH HOH . 
G 4 HOH A 132 632 632 HOH HOH . 
H 4 HOH B 1 501 501 HOH HOH . 
H 4 HOH B 2 502 502 HOH HOH . 
H 4 HOH B 3 503 503 HOH HOH . 
H 4 HOH B 4 504 504 HOH HOH . 
H 4 HOH B 5 505 505 HOH HOH . 
H 4 HOH B 6 506 506 HOH HOH . 
H 4 HOH B 7 507 507 HOH HOH . 
H 4 HOH B 8 508 508 HOH HOH . 
H 4 HOH B 9 509 509 HOH HOH . 
H 4 HOH B 10 510 510 HOH HOH . 
H 4 HOH B 11 511 511 HOH HOH . 
H 4 HOH B 12 512 512 HOH HOH . 
H 4 HOH B 13 513 513 HOH HOH . 
H 4 HOH B 14 514 514 HOH HOH . 
H 4 HOH B 15 515 515 HOH HOH . 
H 4 HOH B 16 516 516 HOH HOH . 
H 4 HOH B 17 517 517 HOH HOH . 
H 4 HOH B 18 518 518 HOH HOH . 
H 4 HOH B 19 519 519 HOH HOH . 
H 4 HOH B 20 520 520 HOH HOH . 
H 4 HOH B 21 521 521 HOH HOH . 
H 4 HOH B 22 522 522 HOH HOH . 
H 4 HOH B 23 523 523 HOH HOH . 
H 4 HOH B 24 524 524 HOH HOH . 
H 4 HOH B 25 525 525 HOH HOH . 
H 4 HOH B 26 526 526 HOH HOH . 
H 4 HOH B 27 527 527 HOH HOH . 
H 4 HOH B 28 528 528 HOH HOH . 
H 4 HOH B 29 529 529 HOH HOH . 
H 4 HOH B 30 530 530 HOH HOH . 
H 4 HOH B 31 531 531 HOH HOH . 
H 4 HOH B 32 532 532 HOH HOH . 
H 4 HOH B 33 533 533 HOH HOH . 
H 4 HOH B 34 534 534 HOH HOH . 
H 4 HOH B 35 535 535 HOH HOH . 
H 4 HOH B 36 536 536 HOH HOH . 
H 4 HOH B 37 537 537 HOH HOH . 
H 4 HOH B 38 538 538 HOH HOH . 
H 4 HOH B 39 539 539 HOH HOH . 
H 4 HOH B 40 540 540 HOH HOH . 
H 4 HOH B 41 541 541 HOH HOH . 
H 4 HOH B 42 542 542 HOH HOH . 
H 4 HOH B 43 543 543 HOH HOH . 
H 4 HOH B 44 544 544 HOH HOH . 
H 4 HOH B 45 545 545 HOH HOH . 
H 4 HOH B 46 546 546 HOH HOH . 
H 4 HOH B 47 547 547 HOH HOH . 
H 4 HOH B 48 548 548 HOH HOH . 
H 4 HOH B 49 549 549 HOH HOH . 
H 4 HOH B 50 550 550 HOH HOH . 
H 4 HOH B 51 551 551 HOH HOH . 
H 4 HOH B 52 552 552 HOH HOH . 
H 4 HOH B 53 553 553 HOH HOH . 
H 4 HOH B 54 554 554 HOH HOH . 
H 4 HOH B 55 555 555 HOH HOH . 
H 4 HOH B 56 556 556 HOH HOH . 
H 4 HOH B 57 557 557 HOH HOH . 
H 4 HOH B 58 558 558 HOH HOH . 
H 4 HOH B 59 559 559 HOH HOH . 
H 4 HOH B 60 560 560 HOH HOH . 
H 4 HOH B 61 561 561 HOH HOH . 
H 4 HOH B 62 562 562 HOH HOH . 
H 4 HOH B 63 563 563 HOH HOH . 
H 4 HOH B 64 564 564 HOH HOH . 
H 4 HOH B 65 565 565 HOH HOH . 
H 4 HOH B 66 566 566 HOH HOH . 
H 4 HOH B 67 567 567 HOH HOH . 
H 4 HOH B 68 568 568 HOH HOH . 
H 4 HOH B 69 569 569 HOH HOH . 
H 4 HOH B 70 570 570 HOH HOH . 
H 4 HOH B 71 571 571 HOH HOH . 
H 4 HOH B 72 572 572 HOH HOH . 
H 4 HOH B 73 573 573 HOH HOH . 
H 4 HOH B 74 574 574 HOH HOH . 
H 4 HOH B 75 575 575 HOH HOH . 
H 4 HOH B 76 576 576 HOH HOH . 
H 4 HOH B 77 577 577 HOH HOH . 
H 4 HOH B 78 578 578 HOH HOH . 
H 4 HOH B 79 579 579 HOH HOH . 
H 4 HOH B 80 580 580 HOH HOH . 
H 4 HOH B 81 581 581 HOH HOH . 
H 4 HOH B 82 582 582 HOH HOH . 
H 4 HOH B 83 583 583 HOH HOH . 
H 4 HOH B 84 584 584 HOH HOH . 
H 4 HOH B 85 585 585 HOH HOH . 
H 4 HOH B 86 586 586 HOH HOH . 
H 4 HOH B 87 587 587 HOH HOH . 
H 4 HOH B 88 588 588 HOH HOH . 
H 4 HOH B 89 589 589 HOH HOH . 
H 4 HOH B 90 590 590 HOH HOH . 
H 4 HOH B 91 591 591 HOH HOH . 
H 4 HOH B 92 592 592 HOH HOH . 
H 4 HOH B 93 593 593 HOH HOH . 
H 4 HOH B 94 594 594 HOH HOH . 
H 4 HOH B 95 595 595 HOH HOH . 
H 4 HOH B 96 596 596 HOH HOH . 
H 4 HOH B 97 597 597 HOH HOH . 
H 4 HOH B 98 598 598 HOH HOH . 
H 4 HOH B 99 599 599 HOH HOH . 
H 4 HOH B 100 600 600 HOH HOH . 
H 4 HOH B 101 601 601 HOH HOH . 
H 4 HOH B 102 602 602 HOH HOH . 
H 4 HOH B 103 603 603 HOH HOH . 
H 4 HOH B 104 604 604 HOH HOH . 
H 4 HOH B 105 605 605 HOH HOH . 
H 4 HOH B 106 606 606 HOH HOH . 
H 4 HOH B 107 607 607 HOH HOH . 
H 4 HOH B 108 608 608 HOH HOH . 
H 4 HOH B 109 609 609 HOH HOH . 
H 4 HOH B 110 610 610 HOH HOH . 
H 4 HOH B 111 611 611 HOH HOH . 
H 4 HOH B 112 612 612 HOH HOH . 
H 4 HOH B 113 613 613 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ARB . . . E 2 9.475 23.157 22.268 1 45.01 ? C1 ARB 400 B 1 
HETATM 2 C C2 ARB . . . E 2 9.538 23.398 20.771 1 43.59 ? C2 ARB 400 B 1 
HETATM 3 C C3 ARB . . . E 2 8.727 24.627 20.397 1 43.59 ? C3 ARB 400 B 1 
HETATM 4 C C4 ARB . . . E 2 7.285 24.535 20.907 1 43.2 ? C4 ARB 400 B 1 
HETATM 5 C C5 ARB . . . E 2 7.313 24.326 22.406 1 41.99 ? C5 ARB 400 B 1 
HETATM 6 O O1 ARB . . . E 2 10.346 24.101 22.921 1 44.14 ? O1 ARB 400 B 1 
HETATM 7 O O2 ARB . . . E 2 10.901 23.657 20.464 1 45.58 ? O2 ARB 400 B 1 
HETATM 8 O O3 ARB . . . E 2 8.764 24.83 18.984 1 43.2 ? O3 ARB 400 B 1 
HETATM 9 O O4 ARB . . . E 2 6.587 23.461 20.279 1 42.12 ? O4 ARB 400 B 1 
HETATM 10 O O5 ARB . . . E 2 8.113 23.195 22.756 1 44.07 ? O5 ARB 400 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#