data_3TB9
#
_model_server_result.job_id            Sde-PuQsCfZQW6S_DW0KlQ 
_model_server_result.datetime_utc      '2024-12-03 12:10:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tb9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":890}' 
#
_entry.id    3TB9 
#
_exptl.entry_id    3TB9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TB9 
_cell.length_a            107.886 
_cell.length_b            116.959 
_cell.length_c            64.329 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TB9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 116.959 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O2A ANP . A ANP 890 1_555 D MG MG . A MG 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc2 C O1B ANP . A ANP 890 1_555 D MG MG . A MG 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc3 C O1G ANP . A ANP 890 1_555 D MG MG . A MG 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     3TB9 
_atom_sites.fract_transf_matrix[1][1]    0.009269 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00855 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CDP A 1 889 889 CDP CDP . 
C 3 ANP A 1 890 890 ANP ANP . 
D 4 MG A 1 891 891 MG MG . 
E 5 HOH A 1 892 892 HOH HOH . 
E 5 HOH A 2 893 893 HOH HOH . 
E 5 HOH A 3 894 894 HOH HOH . 
E 5 HOH A 4 895 895 HOH HOH . 
E 5 HOH A 5 896 896 HOH HOH . 
E 5 HOH A 6 897 897 HOH HOH . 
E 5 HOH A 7 898 898 HOH HOH . 
E 5 HOH A 8 899 899 HOH HOH . 
E 5 HOH A 9 900 900 HOH HOH . 
E 5 HOH A 10 901 901 HOH HOH . 
E 5 HOH A 11 902 902 HOH HOH . 
E 5 HOH A 12 903 903 HOH HOH . 
E 5 HOH A 13 904 904 HOH HOH . 
E 5 HOH A 14 905 905 HOH HOH . 
E 5 HOH A 15 906 906 HOH HOH . 
E 5 HOH A 16 907 907 HOH HOH . 
E 5 HOH A 17 908 908 HOH HOH . 
E 5 HOH A 18 909 909 HOH HOH . 
E 5 HOH A 19 910 910 HOH HOH . 
E 5 HOH A 20 911 911 HOH HOH . 
E 5 HOH A 21 912 912 HOH HOH . 
E 5 HOH A 22 913 913 HOH HOH . 
E 5 HOH A 23 914 914 HOH HOH . 
E 5 HOH A 24 915 915 HOH HOH . 
E 5 HOH A 25 916 916 HOH HOH . 
E 5 HOH A 26 917 917 HOH HOH . 
E 5 HOH A 27 918 918 HOH HOH . 
E 5 HOH A 28 919 919 HOH HOH . 
E 5 HOH A 29 920 920 HOH HOH . 
E 5 HOH A 30 921 921 HOH HOH . 
E 5 HOH A 31 922 922 HOH HOH . 
E 5 HOH A 32 923 923 HOH HOH . 
E 5 HOH A 33 924 924 HOH HOH . 
E 5 HOH A 34 925 925 HOH HOH . 
E 5 HOH A 35 926 926 HOH HOH . 
E 5 HOH A 36 927 927 HOH HOH . 
E 5 HOH A 37 928 928 HOH HOH . 
E 5 HOH A 38 929 929 HOH HOH . 
E 5 HOH A 39 930 930 HOH HOH . 
E 5 HOH A 40 931 931 HOH HOH . 
E 5 HOH A 41 932 932 HOH HOH . 
E 5 HOH A 42 933 933 HOH HOH . 
E 5 HOH A 43 934 934 HOH HOH . 
E 5 HOH A 44 935 935 HOH HOH . 
E 5 HOH A 45 936 936 HOH HOH . 
E 5 HOH A 46 937 937 HOH HOH . 
E 5 HOH A 47 938 938 HOH HOH . 
E 5 HOH A 48 939 939 HOH HOH . 
E 5 HOH A 49 940 940 HOH HOH . 
E 5 HOH A 50 941 941 HOH HOH . 
E 5 HOH A 51 942 942 HOH HOH . 
E 5 HOH A 52 943 943 HOH HOH . 
E 5 HOH A 53 944 944 HOH HOH . 
E 5 HOH A 54 945 945 HOH HOH . 
E 5 HOH A 55 946 946 HOH HOH . 
E 5 HOH A 56 947 947 HOH HOH . 
E 5 HOH A 57 948 948 HOH HOH . 
E 5 HOH A 58 949 949 HOH HOH . 
E 5 HOH A 59 950 950 HOH HOH . 
E 5 HOH A 60 951 951 HOH HOH . 
E 5 HOH A 61 952 952 HOH HOH . 
E 5 HOH A 62 953 953 HOH HOH . 
E 5 HOH A 63 954 954 HOH HOH . 
E 5 HOH A 64 955 955 HOH HOH . 
E 5 HOH A 65 956 956 HOH HOH . 
E 5 HOH A 66 957 957 HOH HOH . 
E 5 HOH A 67 958 958 HOH HOH . 
E 5 HOH A 68 959 959 HOH HOH . 
E 5 HOH A 69 960 960 HOH HOH . 
E 5 HOH A 70 961 961 HOH HOH . 
E 5 HOH A 71 962 962 HOH HOH . 
E 5 HOH A 72 963 963 HOH HOH . 
E 5 HOH A 73 964 964 HOH HOH . 
E 5 HOH A 74 965 965 HOH HOH . 
E 5 HOH A 75 966 966 HOH HOH . 
E 5 HOH A 76 967 967 HOH HOH . 
E 5 HOH A 77 968 968 HOH HOH . 
E 5 HOH A 78 969 969 HOH HOH . 
E 5 HOH A 79 970 970 HOH HOH . 
E 5 HOH A 80 971 971 HOH HOH . 
E 5 HOH A 81 972 972 HOH HOH . 
E 5 HOH A 82 973 973 HOH HOH . 
E 5 HOH A 83 974 974 HOH HOH . 
E 5 HOH A 84 975 975 HOH HOH . 
E 5 HOH A 85 976 976 HOH HOH . 
E 5 HOH A 86 977 977 HOH HOH . 
E 5 HOH A 87 978 978 HOH HOH . 
E 5 HOH A 88 979 979 HOH HOH . 
E 5 HOH A 89 980 980 HOH HOH . 
E 5 HOH A 90 981 981 HOH HOH . 
E 5 HOH A 91 982 982 HOH HOH . 
E 5 HOH A 92 983 983 HOH HOH . 
E 5 HOH A 93 984 984 HOH HOH . 
E 5 HOH A 94 985 985 HOH HOH . 
E 5 HOH A 95 986 986 HOH HOH . 
E 5 HOH A 96 987 987 HOH HOH . 
E 5 HOH A 97 988 988 HOH HOH . 
E 5 HOH A 98 989 989 HOH HOH . 
E 5 HOH A 99 990 990 HOH HOH . 
E 5 HOH A 100 991 991 HOH HOH . 
E 5 HOH A 101 992 992 HOH HOH . 
E 5 HOH A 102 993 993 HOH HOH . 
E 5 HOH A 103 994 994 HOH HOH . 
E 5 HOH A 104 995 995 HOH HOH . 
E 5 HOH A 105 996 996 HOH HOH . 
E 5 HOH A 106 997 997 HOH HOH . 
E 5 HOH A 107 998 998 HOH HOH . 
E 5 HOH A 108 999 999 HOH HOH . 
E 5 HOH A 109 1000 1000 HOH HOH . 
E 5 HOH A 110 1001 1001 HOH HOH . 
E 5 HOH A 111 1002 1002 HOH HOH . 
E 5 HOH A 112 1003 1003 HOH HOH . 
E 5 HOH A 113 1004 1004 HOH HOH . 
E 5 HOH A 114 1005 1005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 -12.292 44.417 25.725 1 50.82 ? PG ANP 890 A 1 
HETATM 2 O O1G ANP . . . C 3 -10.809 44.705 25.692 1 51.87 ? O1G ANP 890 A 1 
HETATM 3 O O2G ANP . . . C 3 -12.763 43.443 24.662 1 49.15 ? O2G ANP 890 A 1 
HETATM 4 O O3G ANP . . . C 3 -12.784 44.186 27.149 1 49.75 ? O3G ANP 890 A 1 
HETATM 5 P PB ANP . . . C 3 -12.426 47.489 25.68 1 50.46 ? PB ANP 890 A 1 
HETATM 6 O O1B ANP . . . C 3 -11.803 47.369 27.066 1 46.86 ? O1B ANP 890 A 1 
HETATM 7 O O2B ANP . . . C 3 -13.562 48.47 25.453 1 49.81 ? O2B ANP 890 A 1 
HETATM 8 N N3B ANP . . . C 3 -13.068 45.911 25.246 1 50.16 ? N3B ANP 890 A 1 
HETATM 9 P PA ANP . . . C 3 -9.744 48.161 24.821 1 46.53 ? PA ANP 890 A 1 
HETATM 10 O O1A ANP . . . C 3 -9.509 49.66 24.914 1 43.08 ? O1A ANP 890 A 1 
HETATM 11 O O2A ANP . . . C 3 -9.25 47.247 25.919 1 46.5 ? O2A ANP 890 A 1 
HETATM 12 O O3A ANP . . . C 3 -11.322 47.887 24.56 1 47.51 ? O3A ANP 890 A 1 
HETATM 13 O O5' ANP . . . C 3 -9.17 47.618 23.409 1 46.53 ? O5' ANP 890 A 1 
HETATM 14 C C5' ANP . . . C 3 -9.085 46.216 23.156 1 45.37 ? C5' ANP 890 A 1 
HETATM 15 C C4' ANP . . . C 3 -8.389 45.921 21.814 1 46.44 ? C4' ANP 890 A 1 
HETATM 16 O O4' ANP . . . C 3 -9.276 46.17 20.716 1 46.38 ? O4' ANP 890 A 1 
HETATM 17 C C3' ANP . . . C 3 -7.104 46.694 21.532 1 45.25 ? C3' ANP 890 A 1 
HETATM 18 O O3' ANP . . . C 3 -6.228 45.855 20.77 1 44.02 ? O3' ANP 890 A 1 
HETATM 19 C C2' ANP . . . C 3 -7.584 47.838 20.671 1 46.06 ? C2' ANP 890 A 1 
HETATM 20 O O2' ANP . . . C 3 -6.613 48.271 19.703 1 48.66 ? O2' ANP 890 A 1 
HETATM 21 C C1' ANP . . . C 3 -8.814 47.289 19.969 1 45.59 ? C1' ANP 890 A 1 
HETATM 22 N N9 ANP . . . C 3 -9.849 48.344 19.966 1 45.79 ? N9 ANP 890 A 1 
HETATM 23 C C8 ANP . . . C 3 -10.73 48.625 20.958 1 45.34 ? C8 ANP 890 A 1 
HETATM 24 N N7 ANP . . . C 3 -11.535 49.659 20.609 1 44.09 ? N7 ANP 890 A 1 
HETATM 25 C C5 ANP . . . C 3 -11.163 50.046 19.373 1 45.06 ? C5 ANP 890 A 1 
HETATM 26 C C6 ANP . . . C 3 -11.586 51.083 18.402 1 44.66 ? C6 ANP 890 A 1 
HETATM 27 N N6 ANP . . . C 3 -12.605 51.923 18.702 1 44.86 ? N6 ANP 890 A 1 
HETATM 28 N N1 ANP . . . C 3 -10.927 51.134 17.209 1 45.52 ? N1 ANP 890 A 1 
HETATM 29 C C2 ANP . . . C 3 -9.913 50.301 16.884 1 45.08 ? C2 ANP 890 A 1 
HETATM 30 N N3 ANP . . . C 3 -9.481 49.338 17.719 1 45.01 ? N3 ANP 890 A 1 
HETATM 31 C C4 ANP . . . C 3 -10.054 49.172 18.944 1 44.82 ? C4 ANP 890 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           31 
#