data_3TBA # _model_server_result.job_id fG9acEr1fWA0qLQGjBW57w _model_server_result.datetime_utc '2025-03-02 06:39:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":890}' # _entry.id 3TBA # _exptl.entry_id 3TBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TBA _cell.length_a 107.772 _cell.length_b 118.086 _cell.length_c 67.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 118.086 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 889 1_555 C O1B DGT . A DGT 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 B MG MG . A MG 889 1_555 C O1A DGT . A DGT 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc3 B MG MG . A MG 889 1_555 C O2G DGT . A DGT 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id DGT _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DGT sing 127 n n PG O2G DGT sing 128 n n O1G HO1G DGT sing 129 n n O2G HO2G DGT sing 130 n n O3G PG DGT doub 131 n n O3B PG DGT sing 132 n n PB O3B DGT sing 133 n n PB O1B DGT sing 134 n n PB O3A DGT sing 135 n n O1B HO1B DGT sing 136 n n O2B PB DGT doub 137 n n PA O3A DGT sing 138 n n PA O1A DGT sing 139 n n O1A HO1A DGT sing 140 n n O2A PA DGT doub 141 n n O5' PA DGT sing 142 n n O5' C5' DGT sing 143 n n C5' H5' DGT sing 144 n n C5' "H5'A" DGT sing 145 n n C4' C5' DGT sing 146 n n C4' H4' DGT sing 147 n n O4' C4' DGT sing 148 n n C3' C4' DGT sing 149 n n C3' O3' DGT sing 150 n n C3' H3' DGT sing 151 n n O3' HO3' DGT sing 152 n n C2' C3' DGT sing 153 n n C2' C1' DGT sing 154 n n C2' H2' DGT sing 155 n n C2' "H2'A" DGT sing 156 n n C1' O4' DGT sing 157 n n C1' H1' DGT sing 158 n n N9 C1' DGT sing 159 n n N9 C4 DGT sing 160 n y C8 N9 DGT sing 161 n y C8 H8 DGT sing 162 n n N7 C8 DGT doub 163 n y N7 C5 DGT sing 164 n y C5 C6 DGT sing 165 n n C5 C4 DGT doub 166 n y C6 N1 DGT sing 167 n n O6 C6 DGT doub 168 n n N1 C2 DGT sing 169 n n C2 N3 DGT doub 170 n n C2 N2 DGT sing 171 n n N2 HN2 DGT sing 172 n n N2 HN2A DGT sing 173 n n C4 N3 DGT sing 174 n n N1 H16 DGT sing 175 n n # _atom_sites.entry_id 3TBA _atom_sites.fract_transf_matrix[1][1] 0.009279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 889 889 MG MG . C 3 DGT A 1 890 890 DGT DGT . D 4 ADP A 1 891 891 ADP ADP . E 5 HOH A 1 892 892 HOH HOH . E 5 HOH A 2 893 893 HOH HOH . E 5 HOH A 3 894 894 HOH HOH . E 5 HOH A 4 895 895 HOH HOH . E 5 HOH A 5 896 896 HOH HOH . E 5 HOH A 6 897 897 HOH HOH . E 5 HOH A 7 898 898 HOH HOH . E 5 HOH A 8 899 899 HOH HOH . E 5 HOH A 9 900 900 HOH HOH . E 5 HOH A 10 901 901 HOH HOH . E 5 HOH A 11 902 902 HOH HOH . E 5 HOH A 12 903 903 HOH HOH . E 5 HOH A 13 904 904 HOH HOH . E 5 HOH A 14 905 905 HOH HOH . E 5 HOH A 15 906 906 HOH HOH . E 5 HOH A 16 907 907 HOH HOH . E 5 HOH A 17 908 908 HOH HOH . E 5 HOH A 18 909 909 HOH HOH . E 5 HOH A 19 910 910 HOH HOH . E 5 HOH A 20 911 911 HOH HOH . E 5 HOH A 21 912 912 HOH HOH . E 5 HOH A 22 913 913 HOH HOH . E 5 HOH A 23 914 914 HOH HOH . E 5 HOH A 24 915 915 HOH HOH . E 5 HOH A 25 916 916 HOH HOH . E 5 HOH A 26 917 917 HOH HOH . E 5 HOH A 27 918 918 HOH HOH . E 5 HOH A 28 919 919 HOH HOH . E 5 HOH A 29 920 920 HOH HOH . E 5 HOH A 30 921 921 HOH HOH . E 5 HOH A 31 922 922 HOH HOH . E 5 HOH A 32 923 923 HOH HOH . E 5 HOH A 33 924 924 HOH HOH . E 5 HOH A 34 925 925 HOH HOH . E 5 HOH A 35 926 926 HOH HOH . E 5 HOH A 36 927 927 HOH HOH . E 5 HOH A 37 928 928 HOH HOH . E 5 HOH A 38 929 929 HOH HOH . E 5 HOH A 39 930 930 HOH HOH . E 5 HOH A 40 931 931 HOH HOH . E 5 HOH A 41 932 932 HOH HOH . E 5 HOH A 42 933 933 HOH HOH . E 5 HOH A 43 934 934 HOH HOH . E 5 HOH A 44 935 935 HOH HOH . E 5 HOH A 45 936 936 HOH HOH . E 5 HOH A 46 937 937 HOH HOH . E 5 HOH A 47 938 938 HOH HOH . E 5 HOH A 48 939 939 HOH HOH . E 5 HOH A 49 940 940 HOH HOH . E 5 HOH A 50 941 941 HOH HOH . E 5 HOH A 51 942 942 HOH HOH . E 5 HOH A 52 943 943 HOH HOH . E 5 HOH A 53 944 944 HOH HOH . E 5 HOH A 54 945 945 HOH HOH . E 5 HOH A 55 946 946 HOH HOH . E 5 HOH A 56 947 947 HOH HOH . E 5 HOH A 57 948 948 HOH HOH . E 5 HOH A 58 949 949 HOH HOH . E 5 HOH A 59 950 950 HOH HOH . E 5 HOH A 60 951 951 HOH HOH . E 5 HOH A 61 952 952 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DGT . . . C 3 -12.313 45.075 27.668 1 60.11 ? PG DGT 890 A 1 HETATM 2 O O1G DGT . . . C 3 -13.323 44.72 28.74 1 62.11 ? O1G DGT 890 A 1 HETATM 3 O O2G DGT . . . C 3 -10.933 45.336 28.25 1 60.29 ? O2G DGT 890 A 1 HETATM 4 O O3G DGT . . . C 3 -12.386 44.202 26.435 1 59.16 ? O3G DGT 890 A 1 HETATM 5 O O3B DGT . . . C 3 -12.828 46.476 27.049 1 57.66 ? O3B DGT 890 A 1 HETATM 6 P PB DGT . . . C 3 -12.383 47.938 27.566 1 55.01 ? PB DGT 890 A 1 HETATM 7 O O1B DGT . . . C 3 -11.628 47.852 28.876 1 54.08 ? O1B DGT 890 A 1 HETATM 8 O O2B DGT . . . C 3 -13.605 48.826 27.453 1 55.09 ? O2B DGT 890 A 1 HETATM 9 O O3A DGT . . . C 3 -11.395 48.421 26.377 1 54.05 ? O3A DGT 890 A 1 HETATM 10 P PA DGT . . . C 3 -9.804 48.656 26.553 1 50.72 ? PA DGT 890 A 1 HETATM 11 O O1A DGT . . . C 3 -9.335 47.722 27.638 1 50.36 ? O1A DGT 890 A 1 HETATM 12 O O2A DGT . . . C 3 -9.517 50.144 26.617 1 50.02 ? O2A DGT 890 A 1 HETATM 13 O O5' DGT . . . C 3 -9.325 48.132 25.117 1 48.73 ? O5' DGT 890 A 1 HETATM 14 C C5' DGT . . . C 3 -9.045 46.76 24.948 1 47.15 ? C5' DGT 890 A 1 HETATM 15 C C4' DGT . . . C 3 -8.467 46.565 23.554 1 48.14 ? C4' DGT 890 A 1 HETATM 16 O O4' DGT . . . C 3 -9.433 46.984 22.594 1 48.89 ? O4' DGT 890 A 1 HETATM 17 C C3' DGT . . . C 3 -7.183 47.327 23.265 1 46.67 ? C3' DGT 890 A 1 HETATM 18 O O3' DGT . . . C 3 -6.21 46.426 22.726 1 44.95 ? O3' DGT 890 A 1 HETATM 19 C C2' DGT . . . C 3 -7.556 48.321 22.198 1 46.38 ? C2' DGT 890 A 1 HETATM 20 C C1' DGT . . . C 3 -8.857 47.83 21.607 1 48.41 ? C1' DGT 890 A 1 HETATM 21 N N9 DGT . . . C 3 -9.746 49.001 21.45 1 48.99 ? N9 DGT 890 A 1 HETATM 22 C C8 DGT . . . C 3 -10.588 49.443 22.404 1 48.47 ? C8 DGT 890 A 1 HETATM 23 N N7 DGT . . . C 3 -11.26 50.528 21.968 1 48.74 ? N7 DGT 890 A 1 HETATM 24 C C5 DGT . . . C 3 -10.851 50.803 20.71 1 49.08 ? C5 DGT 890 A 1 HETATM 25 C C6 DGT . . . C 3 -11.168 51.84 19.682 1 49.44 ? C6 DGT 890 A 1 HETATM 26 O O6 DGT . . . C 3 -12.022 52.738 19.935 1 49.27 ? O6 DGT 890 A 1 HETATM 27 N N1 DGT . . . C 3 -10.529 51.777 18.491 1 48.75 ? N1 DGT 890 A 1 HETATM 28 C C2 DGT . . . C 3 -9.611 50.817 18.225 1 48.71 ? C2 DGT 890 A 1 HETATM 29 N N2 DGT . . . C 3 -9.011 50.833 17.016 1 48.91 ? N2 DGT 890 A 1 HETATM 30 N N3 DGT . . . C 3 -9.272 49.828 19.114 1 49.16 ? N3 DGT 890 A 1 HETATM 31 C C4 DGT . . . C 3 -9.848 49.782 20.359 1 49.26 ? C4 DGT 890 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #