data_3TBA
#
_model_server_result.job_id            VY0kDwwqO9EbqWEPBySbiA 
_model_server_result.datetime_utc      '2024-12-02 16:42:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tba 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":891}' 
#
_entry.id    3TBA 
#
_exptl.entry_id    3TBA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TBA 
_cell.length_a            107.772 
_cell.length_b            118.086 
_cell.length_c            67.71 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TBA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 118.086 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MG MG . A MG 889 1_555 C O1B DGT . A DGT 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc2 B MG MG . A MG 889 1_555 C O1A DGT . A DGT 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc3 B MG MG . A MG 889 1_555 C O2G DGT . A DGT 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3TBA 
_atom_sites.fract_transf_matrix[1][1]    0.009279 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008468 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014769 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 889 889 MG MG . 
C 3 DGT A 1 890 890 DGT DGT . 
D 4 ADP A 1 891 891 ADP ADP . 
E 5 HOH A 1 892 892 HOH HOH . 
E 5 HOH A 2 893 893 HOH HOH . 
E 5 HOH A 3 894 894 HOH HOH . 
E 5 HOH A 4 895 895 HOH HOH . 
E 5 HOH A 5 896 896 HOH HOH . 
E 5 HOH A 6 897 897 HOH HOH . 
E 5 HOH A 7 898 898 HOH HOH . 
E 5 HOH A 8 899 899 HOH HOH . 
E 5 HOH A 9 900 900 HOH HOH . 
E 5 HOH A 10 901 901 HOH HOH . 
E 5 HOH A 11 902 902 HOH HOH . 
E 5 HOH A 12 903 903 HOH HOH . 
E 5 HOH A 13 904 904 HOH HOH . 
E 5 HOH A 14 905 905 HOH HOH . 
E 5 HOH A 15 906 906 HOH HOH . 
E 5 HOH A 16 907 907 HOH HOH . 
E 5 HOH A 17 908 908 HOH HOH . 
E 5 HOH A 18 909 909 HOH HOH . 
E 5 HOH A 19 910 910 HOH HOH . 
E 5 HOH A 20 911 911 HOH HOH . 
E 5 HOH A 21 912 912 HOH HOH . 
E 5 HOH A 22 913 913 HOH HOH . 
E 5 HOH A 23 914 914 HOH HOH . 
E 5 HOH A 24 915 915 HOH HOH . 
E 5 HOH A 25 916 916 HOH HOH . 
E 5 HOH A 26 917 917 HOH HOH . 
E 5 HOH A 27 918 918 HOH HOH . 
E 5 HOH A 28 919 919 HOH HOH . 
E 5 HOH A 29 920 920 HOH HOH . 
E 5 HOH A 30 921 921 HOH HOH . 
E 5 HOH A 31 922 922 HOH HOH . 
E 5 HOH A 32 923 923 HOH HOH . 
E 5 HOH A 33 924 924 HOH HOH . 
E 5 HOH A 34 925 925 HOH HOH . 
E 5 HOH A 35 926 926 HOH HOH . 
E 5 HOH A 36 927 927 HOH HOH . 
E 5 HOH A 37 928 928 HOH HOH . 
E 5 HOH A 38 929 929 HOH HOH . 
E 5 HOH A 39 930 930 HOH HOH . 
E 5 HOH A 40 931 931 HOH HOH . 
E 5 HOH A 41 932 932 HOH HOH . 
E 5 HOH A 42 933 933 HOH HOH . 
E 5 HOH A 43 934 934 HOH HOH . 
E 5 HOH A 44 935 935 HOH HOH . 
E 5 HOH A 45 936 936 HOH HOH . 
E 5 HOH A 46 937 937 HOH HOH . 
E 5 HOH A 47 938 938 HOH HOH . 
E 5 HOH A 48 939 939 HOH HOH . 
E 5 HOH A 49 940 940 HOH HOH . 
E 5 HOH A 50 941 941 HOH HOH . 
E 5 HOH A 51 942 942 HOH HOH . 
E 5 HOH A 52 943 943 HOH HOH . 
E 5 HOH A 53 944 944 HOH HOH . 
E 5 HOH A 54 945 945 HOH HOH . 
E 5 HOH A 55 946 946 HOH HOH . 
E 5 HOH A 56 947 947 HOH HOH . 
E 5 HOH A 57 948 948 HOH HOH . 
E 5 HOH A 58 949 949 HOH HOH . 
E 5 HOH A 59 950 950 HOH HOH . 
E 5 HOH A 60 951 951 HOH HOH . 
E 5 HOH A 61 952 952 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 4 26.968 53.136 17.177 1 79.09 ? PB ADP 891 A 1 
HETATM 2 O O1B ADP . . . D 4 28.169 52.604 16.429 1 79.99 ? O1B ADP 891 A 1 
HETATM 3 O O2B ADP . . . D 4 27.068 53.047 18.689 1 78.26 ? O2B ADP 891 A 1 
HETATM 4 O O3B ADP . . . D 4 26.558 54.499 16.67 1 78.99 ? O3B ADP 891 A 1 
HETATM 5 P PA ADP . . . D 4 25.591 50.544 16.631 1 81.89 ? PA ADP 891 A 1 
HETATM 6 O O1A ADP . . . D 4 24.855 50.232 15.338 1 81.73 ? O1A ADP 891 A 1 
HETATM 7 O O2A ADP . . . D 4 26.888 49.842 16.944 1 82.05 ? O2A ADP 891 A 1 
HETATM 8 O O3A ADP . . . D 4 25.711 52.177 16.743 1 81.2 ? O3A ADP 891 A 1 
HETATM 9 O O5' ADP . . . D 4 24.678 50.168 17.904 1 82.61 ? O5' ADP 891 A 1 
HETATM 10 C C5' ADP . . . D 4 23.352 49.626 17.787 1 84.03 ? C5' ADP 891 A 1 
HETATM 11 C C4' ADP . . . D 4 22.601 50.028 19.053 1 84.23 ? C4' ADP 891 A 1 
HETATM 12 O O4' ADP . . . D 4 22.415 51.448 19.091 1 84.31 ? O4' ADP 891 A 1 
HETATM 13 C C3' ADP . . . D 4 21.234 49.367 19.093 1 84.18 ? C3' ADP 891 A 1 
HETATM 14 O O3' ADP . . . D 4 21.163 48.528 20.251 1 84.26 ? O3' ADP 891 A 1 
HETATM 15 C C2' ADP . . . D 4 20.219 50.513 19.104 1 83.92 ? C2' ADP 891 A 1 
HETATM 16 O O2' ADP . . . D 4 19.45 50.555 20.327 1 82.41 ? O2' ADP 891 A 1 
HETATM 17 C C1' ADP . . . D 4 21.042 51.787 18.864 1 84.02 ? C1' ADP 891 A 1 
HETATM 18 N N9 ADP . . . D 4 20.861 52.293 17.462 1 84.01 ? N9 ADP 891 A 1 
HETATM 19 C C8 ADP . . . D 4 21.583 51.956 16.361 1 83.63 ? C8 ADP 891 A 1 
HETATM 20 N N7 ADP . . . D 4 21.143 52.602 15.247 1 83.4 ? N7 ADP 891 A 1 
HETATM 21 C C5 ADP . . . D 4 20.108 53.381 15.627 1 83.78 ? C5 ADP 891 A 1 
HETATM 22 C C6 ADP . . . D 4 19.169 54.338 14.973 1 83.96 ? C6 ADP 891 A 1 
HETATM 23 N N6 ADP . . . D 4 19.253 54.597 13.647 1 84.03 ? N6 ADP 891 A 1 
HETATM 24 N N1 ADP . . . D 4 18.222 54.952 15.737 1 84.06 ? N1 ADP 891 A 1 
HETATM 25 C C2 ADP . . . D 4 18.118 54.723 17.068 1 84 ? C2 ADP 891 A 1 
HETATM 26 N N3 ADP . . . D 4 18.935 53.87 17.728 1 84.18 ? N3 ADP 891 A 1 
HETATM 27 C C4 ADP . . . D 4 19.927 53.18 17.083 1 84.13 ? C4 ADP 891 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#